FFCP PHASE1:Hg19::chr12:57443886..57443927,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4640 | |EntrezGene=4640 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7595 | |HGNC=7595 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UBC5 | |UniProt=Q9UBC5 | ||
|association_with_transcript=0bp_to_ENST00000300119,NM_005379,uc001smw.3,uc009zpd.2_5end | |association_with_transcript=0bp_to_ENST00000300119,NM_005379,uc001smw.3,uc009zpd.2_5end | ||
|cluster_id=chr12:57443886..57443927,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_1_at_MYO1A_5end | |description=CAGE_peak_1_at_MYO1A_5end | ||
|id=chr12:57443886..57443927,- | |id=chr12:57443886..57443927,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.66e-09;12!CL:0002563;4.38e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.61e-09,12;CL:0000223,2.07e-08,58;CL:0002563,4.38e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.78e-16;11!UBERON:0009497;2.22e-13;13!UBERON:0006241;3.09e-10;3!UBERON:0003057;3.09e-10;3!UBERON:0003104;3.27e-10;31!UBERON:0001045;1.14e-08;1!UBERON:0006242;1.32e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:299;5.54e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,5.47e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.81e-19!115;UBERON:0002298!1.49e-17!8;UBERON:0005409!9.37e-15!35;UBERON:0000160!1.53e-14!27;UBERON:0000059!3.93e-14!11;UBERON:0004921!9.75e-14!129;UBERON:0004185!9.75e-14!129;UBERON:0001049!1.65e-13!57;UBERON:0005068!1.65e-13!57;UBERON:0006241!1.65e-13!57;UBERON:0007135!1.65e-13!57;UBERON:0003076!7.48e-12!15;UBERON:0003057!7.48e-12!15;UBERON:0001017!3.39e-11!82;UBERON:0001007!3.56e-11!155;UBERON:0001555!3.56e-11!155;UBERON:0007026!3.56e-11!155;UBERON:0002308!5.35e-11!9;UBERON:0000125!5.35e-11!9;UBERON:0004907!6.55e-11!5;UBERON:0004119!1.79e-10!169;UBERON:0000925!1.79e-10!169;UBERON:0006595!1.79e-10!169;UBERON:0005743!1.90e-10!86;UBERON:0000955!4.89e-10!69;UBERON:0006238!4.89e-10!69;UBERON:0001896!5.74e-10!3;UBERON:0005290!5.74e-10!3;UBERON:0010096!5.74e-10!3;UBERON:0002616!6.77e-10!59;UBERON:0000988!1.46e-09!3;UBERON:0006331!3.15e-09!3;UBERON:0001155!3.43e-09!9;UBERON:0000062!4.21e-09!511;UBERON:0000073!5.31e-09!94;UBERON:0001016!5.31e-09!94;UBERON:0000063!1.43e-08!97;UBERON:0004733!1.49e-08!12;UBERON:0002028!1.49e-08!12;UBERON:0007277!1.49e-08!12;UBERON:0003075!1.79e-08!86;UBERON:0007284!1.79e-08!86;UBERON:0000077!3.12e-08!130;UBERON:0001052!4.59e-08!4;UBERON:0002346!6.67e-08!90;UBERON:0004732!7.70e-08!13;UBERON:0002148!8.38e-07!2;UBERON:0009662!8.38e-07!2 | |ontology_enrichment_uberon=UBERON:0007023!1.81e-19!115;UBERON:0002298!1.49e-17!8;UBERON:0005409!9.37e-15!35;UBERON:0000160!1.53e-14!27;UBERON:0000059!3.93e-14!11;UBERON:0004921!9.75e-14!129;UBERON:0004185!9.75e-14!129;UBERON:0001049!1.65e-13!57;UBERON:0005068!1.65e-13!57;UBERON:0006241!1.65e-13!57;UBERON:0007135!1.65e-13!57;UBERON:0003076!7.48e-12!15;UBERON:0003057!7.48e-12!15;UBERON:0001017!3.39e-11!82;UBERON:0001007!3.56e-11!155;UBERON:0001555!3.56e-11!155;UBERON:0007026!3.56e-11!155;UBERON:0002308!5.35e-11!9;UBERON:0000125!5.35e-11!9;UBERON:0004907!6.55e-11!5;UBERON:0004119!1.79e-10!169;UBERON:0000925!1.79e-10!169;UBERON:0006595!1.79e-10!169;UBERON:0005743!1.90e-10!86;UBERON:0000955!4.89e-10!69;UBERON:0006238!4.89e-10!69;UBERON:0001896!5.74e-10!3;UBERON:0005290!5.74e-10!3;UBERON:0010096!5.74e-10!3;UBERON:0002616!6.77e-10!59;UBERON:0000988!1.46e-09!3;UBERON:0006331!3.15e-09!3;UBERON:0001155!3.43e-09!9;UBERON:0000062!4.21e-09!511;UBERON:0000073!5.31e-09!94;UBERON:0001016!5.31e-09!94;UBERON:0000063!1.43e-08!97;UBERON:0004733!1.49e-08!12;UBERON:0002028!1.49e-08!12;UBERON:0007277!1.49e-08!12;UBERON:0003075!1.79e-08!86;UBERON:0007284!1.79e-08!86;UBERON:0000077!3.12e-08!130;UBERON:0001052!4.59e-08!4;UBERON:0002346!6.67e-08!90;UBERON:0004732!7.70e-08!13;UBERON:0002148!8.38e-07!2;UBERON:0009662!8.38e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.54e-51;22!UBERON:0000160;1.67e-47;17!UBERON:0000059;7.00e-32;11!UBERON:0004921;4.72e-30;33!UBERON:0004907;2.08e-23;5!UBERON:0001155;2.31e-20;9!UBERON:0001052;7.31e-17;4!UBERON:0002108;3.45e-14;4!UBERON:0001007;1.72e-11;81!UBERON:0001555;5.05e-11;54!UBERON:0002240;3.09e-10;3!UBERON:0005174;3.09e-10;3!UBERON:0001137;3.09e-10;3!UBERON:0001154;1.14e-08;1!UBERON:0001153;1.14e-08;1!UBERON:0009854;1.14e-08;1!UBERON:0001242;4.38e-08;4!UBERON:0001262;4.38e-08;4!UBERON:0004786;4.38e-08;4!UBERON:0004808;4.38e-08;4!UBERON:0001277;4.38e-08;4!UBERON:0002423;7.21e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.63e-47,17;UBERON:0005409,5.40e-45,25;UBERON:0000059,6.84e-32,11;UBERON:0004907,2.02e-23,5;UBERON:0001155,2.36e-20,9;UBERON:0004921,3.05e-18,118;UBERON:0001052,6.92e-17,4;UBERON:0001007,5.66e-16,145;UBERON:0001555,5.66e-16,145;UBERON:0007026,5.66e-16,145;UBERON:0002108,3.45e-14,4;UBERON:0004119,3.95e-14,160;UBERON:0000925,3.95e-14,160;UBERON:0006595,3.95e-14,160;UBERON:0011216,1.42e-12,223;UBERON:0002240,3.31e-10,3;UBERON:0005174,3.31e-10,3;UBERON:0001137,3.31e-10,3;UBERON:0001046,2.43e-09,19;UBERON:0001154,1.18e-08,1;UBERON:0001153,1.18e-08,1;UBERON:0001045,1.18e-08,1;UBERON:0001242,4.38e-08,4;UBERON:0001262,4.38e-08,4;UBERON:0004786,4.38e-08,4;UBERON:0004808,4.38e-08,4;UBERON:0001277,4.38e-08,4;UBERON:0009854,1.67e-07,23;UBERON:0003929,2.84e-07,54;UBERON:0009497,7.12e-07,25;UBERON:0000015,7.12e-07,25;UBERON:0002423,7.12e-07,25;UBERON:0006235,7.12e-07,25;UBERON:0004161,7.12e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0,0,0,11.929878538682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.68039413080624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.386816197559,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4058866784623,1.25966373927138,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50224128596128,0,55.7346681403963,105.529874452484,31.1625373916149,0,0,0,0.606610196826093,0,0.234264445725339,0,0,0,0,33.8774004936259,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4358805949301,0,5.61952626901013,0,0.857974989309823,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.399358000997982,0,0,0,0,13.9795139432945,3.93915911536118,2.47247575143499,2.49393112260484,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,9.23868924575379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.776503360757966,3.66368777354162,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,0.548257766857182,0,0,0,0,0,0,0,0.266107110487916,0,0,0.815636795721981,0.131545547125698,0,0,0.078493092850514,0,17.6571462887687,16.4368569691709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.6246906949645,0,0,0,0,0,0,0,0,0,0,255.755159969729,91.1393367301502,0,0,0,5.30032861210352,2.37637120261669,0,0,0,0,0,0,0,0,5.11235471772562,0,0.143339583151451,0,0,0,37.5609056765934,0,0,0,0,0,0,0.305966489225945,0.26721740526556,0,0,0.0757786982182394,0.267964130156178,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0.217716747896961,0,0,0.502055437748735,0,0,0,0,1.79650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0,0,0,11.929878538682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.68039413080624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.386816197559,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4058866784623,1.25966373927138,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50224128596128,0,55.7346681403963,105.529874452484,31.1625373916149,0,0,0,0.606610196826093,0,0.234264445725339,0,0,0,0,33.8774004936259,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4358805949301,0,5.61952626901013,0,0.857974989309823,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.399358000997982,0,0,0,0,13.9795139432945,3.93915911536118,2.47247575143499,2.49393112260484,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,9.23868924575379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.776503360757966,3.66368777354162,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,0.548257766857182,0,0,0,0,0,0,0,0.266107110487916,0,0,0.815636795721981,0.131545547125698,0,0,0.078493092850514,0,17.6571462887687,16.4368569691709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.6246906949645,0,0,0,0,0,0,0,0,0,0,255.755159969729,91.1393367301502,0,0,0,5.30032861210352,2.37637120261669,0,0,0,0,0,0,0,0,5.11235471772562,0,0.143339583151451,0,0,0,37.5609056765934,0,0,0,0,0,0,0.305966489225945,0.26721740526556,0,0,0.0757786982182394,0.267964130156178,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0.217716747896961,0,0,0.502055437748735,0,0,0,0,1.79650404213174,0,0,0,0,0,0 | ||
|short_description=p1@MYO1A | |short_description=p1@MYO1A | ||
}} | }} |
Latest revision as of 12:37, 19 September 2015
Short description: | p1@MYO1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MYO1A_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000300119, NM_005379, uc001smw.3, uc009zpd.2_5end |
EntrezGene: | MYO1A |
HGNC: | 7595 |
UniProt: | Q9UBC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.61e-09 | 12 |
endodermal cell | 2.07e-08 | 58 |
intestinal epithelial cell | 4.38e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.63e-47 | 17 |
gastrointestinal system | 5.40e-45 | 25 |
large intestine | 6.84e-32 | 11 |
lower digestive tract | 2.02e-23 | 5 |
colon | 2.36e-20 | 9 |
subdivision of digestive tract | 3.05e-18 | 118 |
rectum | 6.92e-17 | 4 |
digestive system | 5.66e-16 | 145 |
digestive tract | 5.66e-16 | 145 |
primitive gut | 5.66e-16 | 145 |
small intestine | 3.45e-14 | 4 |
endoderm-derived structure | 3.95e-14 | 160 |
endoderm | 3.95e-14 | 160 |
presumptive endoderm | 3.95e-14 | 160 |
organ system subdivision | 1.42e-12 | 223 |
spinal cord | 3.31e-10 | 3 |
dorsal region element | 3.31e-10 | 3 |
dorsum | 3.31e-10 | 3 |
hindgut | 2.43e-09 | 19 |
vermiform appendix | 1.18e-08 | 1 |
caecum | 1.18e-08 | 1 |
midgut | 1.18e-08 | 1 |
intestinal mucosa | 4.38e-08 | 4 |
wall of intestine | 4.38e-08 | 4 |
gastrointestinal system mucosa | 4.38e-08 | 4 |
gastrointestinal system epithelium | 4.38e-08 | 4 |
intestinal epithelium | 4.38e-08 | 4 |
digestive tract diverticulum | 1.67e-07 | 23 |
gut epithelium | 2.84e-07 | 54 |
epithelium of foregut-midgut junction | 7.12e-07 | 25 |
anatomical boundary | 7.12e-07 | 25 |
hepatobiliary system | 7.12e-07 | 25 |
foregut-midgut junction | 7.12e-07 | 25 |
septum transversum | 7.12e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 5.47e-07 | 25 |