FFCP PHASE1:Hg19::chr11:65778943..65778967,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:65778943..65778967,+ to FFCP PHASE1:Hg19::chr11:65778943..65778967,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1474 | |EntrezGene=1474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2478 | |HGNC=2478 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001ogq.1_5end | |||
|cluster_id=chr11:65778943..65778967,+ | |||
|coexpression_cluster_id=C1349 | |||
|description=CAGE_peak_2_at_CST6_5end | |||
|id=chr11:65778943..65778967,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.76e-26!254;CL:0002076!1.21e-17!43;CL:0002368!1.37e-13!13;CL:0000223!5.51e-13!59;CL:1000507!8.92e-13!12;CL:1000494!8.92e-13!12;CL:1000497!1.66e-11!18;CL:0002518!1.66e-11!18;CL:1000449!3.22e-11!16;CL:0002202!1.22e-08!9;CL:0002632!1.22e-08!9;CL:0002681!1.29e-07!13;CL:0002584!1.29e-07!13;CL:0000082!2.25e-07!19;CL:0002541!5.06e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002541;9.56e-14;3!CL:0000349;6.83e-13;19!CL:0002537;3.10e-08;5!CL:0002368;2.52e-07;13!CL:0002202;4.26e-07;9!CL:0002632;4.26e-07;9!CL:0002076;5.29e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,9.38e-14,3;CL:0000066,3.52e-13,253;CL:0000349,6.16e-13,19;CL:0002076,3.05e-09,42;CL:0002537,3.14e-08,5;CL:0002368,2.24e-07,13;CL:0002202,3.83e-07,9;CL:0002632,3.83e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.48e-12!106;DOID:299!9.64e-09!25;DOID:0050687!1.19e-08!143;DOID:1749!1.53e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:4468;1.36e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.30e-09,2;DOID:305,2.95e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0005911!1.38e-15!82;UBERON:0004119!2.58e-15!169;UBERON:0000925!2.58e-15!169;UBERON:0006595!2.58e-15!169;UBERON:0000065!6.35e-14!53;UBERON:0000464!1.92e-13!104;UBERON:0000058!2.09e-13!26;UBERON:0005178!8.41e-13!34;UBERON:0002224!8.41e-13!34;UBERON:0009773!8.92e-13!12;UBERON:0001231!8.92e-13!12;UBERON:0004810!8.92e-13!12;UBERON:0000466!1.90e-12!126;UBERON:0005631!2.28e-12!14;UBERON:0000158!2.28e-12!14;UBERON:0005181!2.76e-12!35;UBERON:0001004!2.95e-12!72;UBERON:0005153!5.56e-12!37;UBERON:0006554!6.45e-12!44;UBERON:0005177!8.06e-12!107;UBERON:0001008!1.61e-11!45;UBERON:0004211!3.22e-11!16;UBERON:0001285!3.22e-11!16;UBERON:0007684!3.22e-11!16;UBERON:0003220!3.22e-11!16;UBERON:0004208!3.22e-11!16;UBERON:0009569!1.08e-10!113;UBERON:0002048!1.65e-10!22;UBERON:0000117!1.65e-10!22;UBERON:0000171!1.65e-10!22;UBERON:0000170!1.65e-10!22;UBERON:0005597!1.65e-10!22;UBERON:0000118!1.65e-10!22;UBERON:0006555!2.15e-10!17;UBERON:0005103!2.15e-10!17;UBERON:0000083!2.15e-10!17;UBERON:0009201!2.15e-10!17;UBERON:0004819!2.15e-10!17;UBERON:0006553!2.15e-10!17;UBERON:0003074!2.15e-10!17;UBERON:0003060!2.15e-10!17;UBERON:0000064!3.99e-10!219;UBERON:0003124!5.37e-10!7;UBERON:0000080!1.16e-09!18;UBERON:0002120!1.16e-09!18;UBERON:0004875!1.16e-09!18;UBERON:0005721!1.16e-09!18;UBERON:0005754!1.16e-09!18;UBERON:0007297!1.16e-09!18;UBERON:0003064!1.41e-09!37;UBERON:0001007!3.97e-09!155;UBERON:0001555!3.97e-09!155;UBERON:0007026!3.97e-09!155;UBERON:0000077!6.95e-09!130;UBERON:0000915!1.52e-08!52;UBERON:0002294!1.55e-08!7;UBERON:0001173!1.55e-08!7;UBERON:0004912!1.55e-08!7;UBERON:0004876!2.00e-08!20;UBERON:0005157!2.61e-08!51;UBERON:0000072!3.97e-08!46;UBERON:0007196!5.32e-08!14;UBERON:0001558!5.32e-08!14;UBERON:0003887!6.74e-08!21;UBERON:0002113!9.17e-08!27;UBERON:0003918!9.17e-08!27;UBERON:0005095!9.17e-08!27;UBERON:0007687!9.17e-08!27;UBERON:0001225!1.29e-07!13;UBERON:0008987!1.29e-07!13;UBERON:0004807!1.62e-07!28;UBERON:0001851!1.75e-07!16;UBERON:0000344!1.77e-07!12;UBERON:0008947!2.11e-07!38;UBERON:0003258!2.11e-07!38;UBERON:0004802!2.25e-07!19;UBERON:0000115!2.25e-07!19;UBERON:0000489!3.29e-07!32;UBERON:0004923!3.35e-07!57;UBERON:0002394!3.40e-07!4;UBERON:0003928!3.40e-07!4;UBERON:0000476!5.06e-07!3;UBERON:0000920!5.06e-07!3;UBERON:0002185!6.76e-07!4;UBERON:0004921!8.49e-07!129;UBERON:0004185!8.49e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.48e-15;10!UBERON:0000158;5.48e-15;10!UBERON:0003124;9.56e-14;3!UBERON:0000920;9.56e-14;3!UBERON:0000478;1.77e-12;24!UBERON:0001987;1.86e-09;4!UBERON:0004807;6.27e-08;22!UBERON:0002048;7.30e-08;22!UBERON:0000117;7.30e-08;22!UBERON:0000171;7.30e-08;22!UBERON:0000170;7.30e-08;22!UBERON:0000486;7.34e-08;12!UBERON:0005911;9.12e-08;36!UBERON:0000365;1.63e-07;5!UBERON:0006554;3.35e-07;30!UBERON:0001008;3.35e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.11e-22,14;UBERON:0000158,1.11e-22,14;UBERON:0003124,6.17e-21,7;UBERON:0000920,9.38e-14,3;UBERON:0006554,2.29e-13,47;UBERON:0001008,5.04e-13,48;UBERON:0005911,7.28e-13,82;UBERON:0000478,1.64e-12,24;UBERON:0004119,2.29e-11,160;UBERON:0000925,2.29e-11,160;UBERON:0006595,2.29e-11,160;UBERON:0001987,1.59e-09,4;UBERON:0004340,1.59e-09,4;UBERON:0004923,6.64e-09,66;UBERON:0005153,6.94e-09,37;UBERON:0002048,5.89e-08,22;UBERON:0000117,5.89e-08,22;UBERON:0000171,5.89e-08,22;UBERON:0000170,5.89e-08,22;UBERON:0005597,5.89e-08,22;UBERON:0000118,5.89e-08,22;UBERON:0000365,1.46e-07,5;UBERON:0001007,6.07e-07,145;UBERON:0001555,6.07e-07,145;UBERON:0007026,6.07e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,16.2184398090996,36.9834619025387,0,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,1.83884244895785,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0,2.31913023795956,1.09098448236334,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,1.1240175325762,0.100528972411631,0,0,0,0,0,0,0,0,0,0,1.71697232418975,0,0,0,0,1.6798212819886,0.850650583454319,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81876542867756,3.32870879020994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.60911646545913,0.368323955743585,0,0,0,3.15839729035188,0.924184045252977,0.784349769176855,1.46139224653261,0.527758144464379,0,0,0,0,0.270946437543853,0.501689773854853,0.764628819135115,5.81753206250107,1.11937377361089,0,0,0,0.984043937099117,0.325378394664303,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0,0,0,0.826424576804891,2.49847087574638,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,1.08890984861323,0.847294206991012,3.87454835404107,0,0.443430153536676,1.83778720165568,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.44610108791763,18.4118102116236,7.06469614828234,0,0,0,0,0,0,0,0,0,0,0,29.6565558786179,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0,0,0,1.77977555204936,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.113942055847001,0,0.538545866458633,2.17294743844016,13.7170498684725,17.5867379331576,21.3213910407454,0,0,0,0,0,0,0,0,20.6778103237466,6.52931232636591,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.694238953340524,0.0979923974143777,6.09414446062818,0,0,0,0,0,0.581934098930517,0,0,0,0,0,0.586654148204409,2.08412932653988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59743200399193,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,11.7068270364862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,1.49502377594773,0.157204305099666,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,1.28664954824955,0,0,0,0.244736704506468,0.358177682162975,0,0,0,2.31496845925098,0.506827321959218,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,0.183428598521679,5.31418064291556,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,13.4549038457511,0,0,0,0,0,0,0,0,3.83287282918786,0,0,0,0,2.30626162422861,0,0,0,0,7.32801813480603,1.77970243027311,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4337327182752,0,0,0.335566295393377,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11658204946091,0.561689566824178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0,0,0,0,0,0,0.426467963801962,0,0.0645889098360061,0,1.34558235096736,0.381882949668989,0,0.653150243690884,1.36893320434112,0.26940821205835,0.0717222053926763,0,1.13964576055364,0,0,0,0,0,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,16.2184398090996,36.9834619025387,0,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,1.83884244895785,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0,2.31913023795956,1.09098448236334,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,1.1240175325762,0.100528972411631,0,0,0,0,0,0,0,0,0,0,1.71697232418975,0,0,0,0,1.6798212819886,0.850650583454319,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81876542867756,3.32870879020994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.60911646545913,0.368323955743585,0,0,0,3.15839729035188,0.924184045252977,0.784349769176855,1.46139224653261,0.527758144464379,0,0,0,0,0.270946437543853,0.501689773854853,0.764628819135115,5.81753206250107,1.11937377361089,0,0,0,0.984043937099117,0.325378394664303,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0,0,0,0.826424576804891,2.49847087574638,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,1.08890984861323,0.847294206991012,3.87454835404107,0,0.443430153536676,1.83778720165568,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.44610108791763,18.4118102116236,7.06469614828234,0,0,0,0,0,0,0,0,0,0,0,29.6565558786179,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0,0,0,1.77977555204936,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.113942055847001,0,0.538545866458633,2.17294743844016,13.7170498684725,17.5867379331576,21.3213910407454,0,0,0,0,0,0,0,0,20.6778103237466,6.52931232636591,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.694238953340524,0.0979923974143777,6.09414446062818,0,0,0,0,0,0.581934098930517,0,0,0,0,0,0.586654148204409,2.08412932653988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59743200399193,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,11.7068270364862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,1.49502377594773,0.157204305099666,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,1.28664954824955,0,0,0,0.244736704506468,0.358177682162975,0,0,0,2.31496845925098,0.506827321959218,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,0.183428598521679,5.31418064291556,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,13.4549038457511,0,0,0,0,0,0,0,0,3.83287282918786,0,0,0,0,2.30626162422861,0,0,0,0,7.32801813480603,1.77970243027311,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4337327182752,0,0,0.335566295393377,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11658204946091,0.561689566824178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0,0,0,0,0,0,0.426467963801962,0,0.0645889098360061,0,1.34558235096736,0.381882949668989,0,0.653150243690884,1.36893320434112,0.26940821205835,0.0717222053926763,0,1.13964576055364,0,0,0,0,0,0.813792356631477,0,0,0 | ||
|short_description=p2@CST6 | |||
}} | }} |
Latest revision as of 12:47, 19 September 2015
Short description: | p2@CST6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CST6_5end |
Coexpression cluster: | C1349_Alveolar_bile_chorionic_clear_amniotic_papillotubular_serous |
Association with transcript: | 0bp_to_uc001ogq.1_5end |
EntrezGene: | CST6 |
HGNC: | 2478 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 9.38e-14 | 3 |
epithelial cell | 3.52e-13 | 253 |
extraembryonic cell | 6.16e-13 | 19 |
endo-epithelial cell | 3.05e-09 | 42 |
amnion mesenchymal stem cell | 3.14e-08 | 5 |
respiratory epithelial cell | 2.24e-07 | 13 |
epithelial cell of tracheobronchial tree | 3.83e-07 | 9 |
epithelial cell of lower respiratory tract | 3.83e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.11e-22 | 14 |
membranous layer | 1.11e-22 | 14 |
chorion | 6.17e-21 | 7 |
egg chorion | 9.38e-14 | 3 |
urinary system structure | 2.29e-13 | 47 |
renal system | 5.04e-13 | 48 |
endo-epithelium | 7.28e-13 | 82 |
extraembryonic structure | 1.64e-12 | 24 |
endoderm-derived structure | 2.29e-11 | 160 |
endoderm | 2.29e-11 | 160 |
presumptive endoderm | 2.29e-11 | 160 |
placenta | 1.59e-09 | 4 |
allantois | 1.59e-09 | 4 |
organ component layer | 6.64e-09 | 66 |
epithelial bud | 6.94e-09 | 37 |
lung | 5.89e-08 | 22 |
respiratory tube | 5.89e-08 | 22 |
respiration organ | 5.89e-08 | 22 |
pair of lungs | 5.89e-08 | 22 |
lung primordium | 5.89e-08 | 22 |
lung bud | 5.89e-08 | 22 |
urothelium | 1.46e-07 | 5 |
digestive system | 6.07e-07 | 145 |
digestive tract | 6.07e-07 | 145 |
primitive gut | 6.07e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.30e-09 | 2 |
carcinoma | 2.95e-09 | 106 |