FFCP PHASE1:Hg19::chr22:26878182..26878233,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89781 | |EntrezGene=89781 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=15844 | |HGNC=15844 | ||
|TSSclassifier=strong | |||
|UniProt=Q6P1K3 | |UniProt=Q6P1K3 | ||
|association_with_transcript=-64bp_to_BC065030_5end | |association_with_transcript=-64bp_to_BC065030_5end | ||
|cluster_id=chr22:26878182..26878233,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_5_at_HPS4_5end | |description=CAGE_peak_5_at_HPS4_5end | ||
|id=chr22:26878182..26878233,- | |id=chr22:26878182..26878233,- | ||
|ontology_enrichment_celltype=CL:0000147!1.04e-11!14;CL:0000148!3.42e-09!10;CL:0000541!3.42e-09!10;CL:0000037!1.65e-08!172;CL:0000566!1.65e-08!172;CL:0002032!2.33e-08!165;CL:0000837!2.33e-08!165;CL:0002274!2.55e-08!5;CL:0000457!2.55e-08!5;CL:0002191!2.55e-08!5;CL:0000097!2.55e-08!5;CL:0000831!2.55e-08!5;CL:0002028!2.55e-08!5;CL:0000988!9.57e-08!182;CL:0000763!1.55e-07!112;CL:0000049!1.55e-07!112;CL:0000149!6.92e-07!4 | |ontology_enrichment_celltype=CL:0000147!1.04e-11!14;CL:0000148!3.42e-09!10;CL:0000541!3.42e-09!10;CL:0000037!1.65e-08!172;CL:0000566!1.65e-08!172;CL:0002032!2.33e-08!165;CL:0000837!2.33e-08!165;CL:0002274!2.55e-08!5;CL:0000457!2.55e-08!5;CL:0002191!2.55e-08!5;CL:0000097!2.55e-08!5;CL:0000831!2.55e-08!5;CL:0002028!2.55e-08!5;CL:0000988!9.57e-08!182;CL:0000763!1.55e-07!112;CL:0000049!1.55e-07!112;CL:0000149!6.92e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000147;2.43e-33;14!CL:0000235;4.67e-28;6!CL:0000097;5.08e-24;5!CL:0000148;5.37e-24;10!CL:0000149;3.27e-19;4!CL:0002567;7.56e-16;3!CL:0002619;1.28e-14;3!CL:0002586;1.66e-14;3!CL:0000163;3.04e-13;9!CL:0000710;1.71e-11;20!CL:0000075;3.01e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,2.39e-33,14;CL:0000235,5.38e-28,6;CL:0000097,5.46e-24,5;CL:0002028,5.46e-24,5;CL:0000148,5.55e-24,10;CL:0000541,5.55e-24,10;CL:0000149,3.04e-19,4;CL:0002567,7.56e-16,3;CL:0002619,1.22e-14,3;CL:0002586,1.55e-14,3;CL:0000163,3.16e-13,9;CL:0000710,1.74e-11,20;CL:0002031,7.83e-11,120;CL:0000839,8.59e-11,66;CL:0000557,1.37e-10,67;CL:0000037,2.44e-10,168;CL:0000738,3.23e-10,136;CL:0002032,7.05e-10,161;CL:0000837,7.05e-10,161;CL:0000766,1.16e-09,72;CL:0000988,1.49e-09,177;CL:0000763,1.42e-08,108;CL:0000049,1.42e-08,108;CL:0000075,3.04e-08,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!9.99e-12!51;DOID:0060083!9.99e-12!51;DOID:1240!2.65e-11!39;DOID:8692!2.93e-07!31 | |ontology_enrichment_disease=DOID:2531!9.99e-12!51;DOID:0060083!9.99e-12!51;DOID:1240!2.65e-11!39;DOID:8692!2.93e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:1909;5.66e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,5.39e-11,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.61e-15;5!UBERON:0005388;4.61e-15;5!UBERON:0001802;4.61e-15;5!UBERON:0001781;1.66e-14;3!UBERON:0001782;1.66e-14;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.55e-14,3;UBERON:0005424,1.55e-14,3;UBERON:0000966,1.39e-12,6;UBERON:0005388,1.39e-12,6;UBERON:0001802,1.39e-12,6;UBERON:0001781,4.98e-11,4;UBERON:0001474,1.74e-09,82;UBERON:0002371,5.21e-09,76;UBERON:0004765,2.25e-08,90;UBERON:0002405,5.39e-08,93;UBERON:0002390,1.95e-07,98;UBERON:0003061,1.95e-07,98;UBERON:0001434,3.06e-07,100 | |||
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| ||
|short_description=p5@HPS4 | |short_description=p5@HPS4 | ||
}} | }} |
Latest revision as of 12:51, 19 September 2015
Short description: | p5@HPS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HPS4_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -64bp_to_BC065030_5end |
EntrezGene: | HPS4 |
HGNC: | 15844 |
UniProt: | Q6P1K3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 2.39e-33 | 14 |
macrophage | 5.38e-28 | 6 |
mast cell | 5.46e-24 | 5 |
basophil mast progenitor cell | 5.46e-24 | 5 |
melanocyte | 5.55e-24 | 10 |
melanoblast | 5.55e-24 | 10 |
visual pigment cell | 3.04e-19 | 4 |
light melanocyte | 7.56e-16 | 3 |
adult endothelial progenitor cell | 1.22e-14 | 3 |
retinal pigment epithelial cell | 1.55e-14 | 3 |
endocrine cell | 3.16e-13 | 9 |
neurecto-epithelial cell | 1.74e-11 | 20 |
hematopoietic lineage restricted progenitor cell | 7.83e-11 | 120 |
myeloid lineage restricted progenitor cell | 8.59e-11 | 66 |
granulocyte monocyte progenitor cell | 1.37e-10 | 67 |
hematopoietic stem cell | 2.44e-10 | 168 |
leukocyte | 3.23e-10 | 136 |
hematopoietic oligopotent progenitor cell | 7.05e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.05e-10 | 161 |
myeloid leukocyte | 1.16e-09 | 72 |
hematopoietic cell | 1.49e-09 | 177 |
myeloid cell | 1.42e-08 | 108 |
common myeloid progenitor | 1.42e-08 | 108 |
columnar/cuboidal epithelial cell | 3.04e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.55e-14 | 3 |
presumptive retinal pigmented epithelium | 1.55e-14 | 3 |
retina | 1.39e-12 | 6 |
photoreceptor array | 1.39e-12 | 6 |
posterior segment of eyeball | 1.39e-12 | 6 |
layer of retina | 4.98e-11 | 4 |
bone element | 1.74e-09 | 82 |
bone marrow | 5.21e-09 | 76 |
skeletal element | 2.25e-08 | 90 |
immune system | 5.39e-08 | 93 |
hematopoietic system | 1.95e-07 | 98 |
blood island | 1.95e-07 | 98 |
skeletal system | 3.06e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
melanoma | 5.39e-11 | 2 |