FFCP PHASE1:Hg19::chr17:33307601..33307612,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3980 | |EntrezGene=3980 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6600 | |HGNC=6600 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000467697_5end | |association_with_transcript=5bp_to_ENST00000467697_5end | ||
|cluster_id=chr17:33307601..33307612,+ | |||
|description=CAGE_peak_2_at_LIG3_5end | |description=CAGE_peak_2_at_LIG3_5end | ||
|id=chr17:33307601..33307612,+ | |id=chr17:33307601..33307612,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.43e-19;5!CL:0002321;1.27e-15;15!CL:0002549;1.83e-08;2!CL:0000333;4.51e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.69e-19,5;CL:0002549,5.63e-09,2;CL:0000221,2.00e-08,72;CL:0000133,5.19e-08,59;CL:0000333,2.49e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.11e-10!235;DOID:14566!1.85e-10!239;DOID:0050687!1.44e-09!143;DOID:305!6.54e-07!106 | |ontology_enrichment_disease=DOID:162!1.11e-10!235;DOID:14566!1.85e-10!239;DOID:0050687!1.44e-09!143;DOID:305!6.54e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:169;8.84e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,9.09e-07,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0005904;5.31e-09;4!UBERON:0005629;1.83e-08;2!UBERON:0005358;1.83e-08;2!UBERON:0001886;1.83e-08;2!UBERON:0004086;1.83e-08;2!UBERON:0005282;1.83e-08;2!UBERON:0005281;1.83e-08;2!UBERON:0003135;2.68e-08;11!UBERON:0000013;4.51e-08;5!UBERON:0002410;4.51e-08;5!UBERON:0000473;1.20e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005904,3.80e-09,4;UBERON:0005629,5.63e-09,2;UBERON:0005358,5.63e-09,2;UBERON:0001886,5.63e-09,2;UBERON:0004086,5.63e-09,2;UBERON:0005282,5.63e-09,2;UBERON:0005281,5.63e-09,2;UBERON:0003135,2.86e-08,11;UBERON:0000013,4.67e-08,5;UBERON:0002410,4.67e-08,5;UBERON:0000473,1.13e-07,8 | |||
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| ||
|short_description=p2@LIG3 | |short_description=p2@LIG3 | ||
}} | }} |
Latest revision as of 14:09, 19 September 2015
Short description: | p2@LIG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIG3_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_ENST00000467697_5end |
EntrezGene: | LIG3 |
HGNC: | 6600 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.69e-19 | 5 |
fibroblast of choroid plexus | 5.63e-09 | 2 |
ectodermal cell | 2.00e-08 | 72 |
neurectodermal cell | 5.19e-08 | 59 |
migratory neural crest cell | 2.49e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
duct of male reproductive system | 3.80e-09 | 4 |
vascular plexus | 5.63e-09 | 2 |
ventricle of nervous system | 5.63e-09 | 2 |
choroid plexus | 5.63e-09 | 2 |
brain ventricle | 5.63e-09 | 2 |
ventricular system of brain | 5.63e-09 | 2 |
ventricular system of central nervous system | 5.63e-09 | 2 |
male reproductive organ | 2.86e-08 | 11 |
sympathetic nervous system | 4.67e-08 | 5 |
autonomic nervous system | 4.67e-08 | 5 |
testis | 1.13e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 9.09e-07 | 6 |