FFCP PHASE1:Hg19::chr1:19970231..19970251,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:19970231..19970251,+ to FFCP PHASE1:Hg19::chr1:19970231..19970251,+: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4681 | |EntrezGene=4681 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7650 | |HGNC=7650 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc009vpm.1_5end | |||
|cluster_id=chr1:19970231..19970251,+ | |||
|description=CAGE_peak_6_at_NBL1_5end | |||
|id=chr1:19970231..19970251,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000153;1.25e-10;9!CL:0000447;1.25e-10;9!CL:0000135;1.83e-09;3!CL:0000388;1.83e-09;3!CL:0000327;5.48e-08;15!CL:0000499;6.43e-08;28!CL:0000138;3.13e-07;6!CL:0002549;3.87e-07;2!CL:0002575;5.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.43e-10,9;CL:0000447,1.43e-10,9;CL:0000135,1.54e-09,3;CL:0000388,1.54e-09,3;CL:0000327,6.41e-08,15;CL:0000499,6.85e-08,28;CL:0000058,3.54e-07,6;CL:0000138,3.54e-07,6;CL:0002549,3.88e-07,2;CL:0002575,5.03e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.47e-17!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;6.63e-12;8!UBERON:0000982;6.63e-12;8!UBERON:0004770;6.63e-12;8!UBERON:0001013;1.73e-10;14!UBERON:0007846;1.83e-09;3!UBERON:0000043;1.83e-09;3!UBERON:0007845;1.83e-09;3!UBERON:0011135;1.60e-08;5!UBERON:0002216;1.60e-08;5!UBERON:0011134;1.60e-08;5!UBERON:0002209;1.60e-08;5!UBERON:0002213;1.60e-08;5!UBERON:0007844;1.60e-08;5!UBERON:0011138;1.60e-08;5!UBERON:0001130;1.60e-08;5!UBERON:0001066;1.60e-08;5!UBERON:0001468;1.60e-08;5!UBERON:0005629;3.87e-07;2!UBERON:0005358;3.87e-07;2!UBERON:0001886;3.87e-07;2!UBERON:0004086;3.87e-07;2!UBERON:0005282;3.87e-07;2!UBERON:0005281;3.87e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,6.75e-12,8;UBERON:0000982,6.75e-12,8;UBERON:0004770,6.75e-12,8;UBERON:0007023,1.82e-11,114;UBERON:0001013,1.15e-10,14;UBERON:0007846,1.54e-09,3;UBERON:0000043,1.54e-09,3;UBERON:0007845,1.54e-09,3;UBERON:0011135,1.61e-08,5;UBERON:0002216,1.61e-08,5;UBERON:0011134,1.61e-08,5;UBERON:0002209,1.61e-08,5;UBERON:0002213,1.61e-08,5;UBERON:0005856,1.61e-08,5;UBERON:0005866,1.61e-08,5;UBERON:0005863,1.61e-08,5;UBERON:0007844,1.61e-08,5;UBERON:0011138,1.61e-08,5;UBERON:0001130,1.61e-08,5;UBERON:0001066,1.61e-08,5;UBERON:0001468,1.61e-08,5;UBERON:0005629,3.88e-07,2;UBERON:0005358,3.88e-07,2;UBERON:0001886,3.88e-07,2;UBERON:0004086,3.88e-07,2;UBERON:0005282,3.88e-07,2;UBERON:0005281,3.88e-07,2 | |||
|phase1_expression=2.54349730978779,1.07050261945492,0.986680828671798,0,1.78784437770915,1.74467704820074,0,3.15859936713415,0.783556884599516,0,0,0,0.263766978228454,1.23766352960047,1.98838425436749,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,2.01210257911091,0.12786256184353,1.44575660953827,2.00535164254356,4.92478164466801,0,1.45990461090791,0.189069634328136,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.860509862246441,0,0,0,0,0,0,0,12.4113090668844,16.70910180992,0,0.624320153660641,0,0.747243402759005,0,0,0,0,0,0.103325781175765,0,0,0.910161361938026,0.718618141816238,0,0,0,0.438977620880838,0,0.751190294532984,0.113432183160021,0,0,0,0.300091096084402,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0.252433774244115,0,4.36444353410792,0,0.201504196455281,0,0,0,0.286804595389004,0,0.132529768321485,0,0.10366105501537,0,0,0,1.92972281457866,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.37872730027914,0,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0.336393253036082,1.30788020649984,0.07333828582095,0,7.15312891703765,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,2.29723871668228,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4538298343828,2.00068208423871,0.271265023699736,0.207970861530807,0.713715955188647,0,0.35142424497814,0.300946099727719,6.82222512167955,0,0,0.184369168541703,0.260650843404249,6.65723935373318,7.54915532383883,0,0,0,0,0,0.30239029332968,0.496215615637554,0.61384789315225,0.561320188866147,0.512556597022804,0,0,1.48418066444991,0.308419387605311,0.710246901252508,3.12083192852475,1.03850885836724,0.348631135379878,0,0,0,0.114814448164607,0.364182336013434,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.721287081534056,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0.532306030317022,1.73986598415015,0.55597265731176,0,0.372158369359667,2.53103539774981,0.38126038784765,0,0,4.77304871888905,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0.243713489631284,0,0.136499911407986,0,7.910568163417,1.10273068709225,0,0.876901770507525,0,0,0,0,0,0,0.0982490410131212,0,0,19.2107948120874,18.1112191127946,0,0.699869440489966,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0.121360521749513,0,0,0,0,0,0.994147647766298,0.140669416410513,1.00177834520615,0.16480387422676,0,1.19548792950642,0,0,0,0,0,0,0,0,2.56472854656027,0,0,0,0.185536196323703,0,0,0.0874599999961957,0,0.1137934482855,0,0,0.344743373241465,0,0.173624994933292,0,0.120596438625408,0,0,0.295547618953547,0.658156191461918,0,0,3.61666214967846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85760885457012,0.611030144933625,0,0,0,0.202203398942031,0,0,0,0,0,1.18375320854817,0,0,4.48624715362264,0,0,0,0,0,0,0,0,0,0,0,3.31980669659857,0,0,0,0.0821154570532092,2.61870344518732,0,2.03382666702479,0,0,0.189932387867636,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,1.67569440763353,0.458320848023367,3.58936512288407,0.399358000997982,0.429226048136571,1.78537165953498,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0.674921674654501,1.5476039091159,0.121499113316049,0,0.0788057072991982,0.104909176269996,0,0,0,2.85878130549347,0.662091970365432,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0,0,2.56289790162467,1.10043013569766,1.24271716604159,0.992332043623902,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0,0.248385611765534,0,0,0.151649117541648,0,0,0,0,1.49254802886874,0,1.66441758450784,0.378806010550178,0,19.5758468751238,0.457680136793847,2.7221566277383,0.310874401165561,0.147855149989634,0,0,0.155262956876259,0.829412415681711,0,0,0.150257608997218,0,0,0.363697318405119,0,0,0,0,0.343395705182793,1.6837474438296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.371807292777007,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0.381382095467167,0,0,1.50420656698514,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,0,4.46590060550365,0.879356221798103,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0.135939465953663,0.197318320688547,0,0,2.8257513426185,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0.173858272302579,0,0,0.17071847709395,0,0.430227358820278,0,0,0.846774100381858,0.22910686854405,0,0,0,0,0,0,0.410651227424988,0,0.971421986118279,0,0,0,0,0,0,1.92935395269862,0,0,1.47088993052343,0,0.981542335574726,0,0.4226557275834,0.339854229375634,0,0.0644578879735772,0,0,0,0,0,0.917458566809082,0.716697915757256,0,0.407948941145488,0,0,2.97596014533401,14.327444487574,6.05677186973305,0,0,0,0,0.26721740526556,0,0,3.03114792872958,1.87574891109325,0,0.103432995861895,3.41174371041569,0.476128862927481,0,0,0,0.827413057616144,0.202117188958219,0.653150243690884,0.684466602170562,1.01028079521881,1.00411087549747,1.99596213927608,0,0,0,0.0898252021065869,2.34640942403454,1.34465588601153,0,4.66029741929859,1.40891655513718,0 | |phase1_expression=2.54349730978779,1.07050261945492,0.986680828671798,0,1.78784437770915,1.74467704820074,0,3.15859936713415,0.783556884599516,0,0,0,0.263766978228454,1.23766352960047,1.98838425436749,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,2.01210257911091,0.12786256184353,1.44575660953827,2.00535164254356,4.92478164466801,0,1.45990461090791,0.189069634328136,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.860509862246441,0,0,0,0,0,0,0,12.4113090668844,16.70910180992,0,0.624320153660641,0,0.747243402759005,0,0,0,0,0,0.103325781175765,0,0,0.910161361938026,0.718618141816238,0,0,0,0.438977620880838,0,0.751190294532984,0.113432183160021,0,0,0,0.300091096084402,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0.252433774244115,0,4.36444353410792,0,0.201504196455281,0,0,0,0.286804595389004,0,0.132529768321485,0,0.10366105501537,0,0,0,1.92972281457866,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.37872730027914,0,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0.336393253036082,1.30788020649984,0.07333828582095,0,7.15312891703765,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,2.29723871668228,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4538298343828,2.00068208423871,0.271265023699736,0.207970861530807,0.713715955188647,0,0.35142424497814,0.300946099727719,6.82222512167955,0,0,0.184369168541703,0.260650843404249,6.65723935373318,7.54915532383883,0,0,0,0,0,0.30239029332968,0.496215615637554,0.61384789315225,0.561320188866147,0.512556597022804,0,0,1.48418066444991,0.308419387605311,0.710246901252508,3.12083192852475,1.03850885836724,0.348631135379878,0,0,0,0.114814448164607,0.364182336013434,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.721287081534056,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0.532306030317022,1.73986598415015,0.55597265731176,0,0.372158369359667,2.53103539774981,0.38126038784765,0,0,4.77304871888905,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0.243713489631284,0,0.136499911407986,0,7.910568163417,1.10273068709225,0,0.876901770507525,0,0,0,0,0,0,0.0982490410131212,0,0,19.2107948120874,18.1112191127946,0,0.699869440489966,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0.121360521749513,0,0,0,0,0,0.994147647766298,0.140669416410513,1.00177834520615,0.16480387422676,0,1.19548792950642,0,0,0,0,0,0,0,0,2.56472854656027,0,0,0,0.185536196323703,0,0,0.0874599999961957,0,0.1137934482855,0,0,0.344743373241465,0,0.173624994933292,0,0.120596438625408,0,0,0.295547618953547,0.658156191461918,0,0,3.61666214967846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85760885457012,0.611030144933625,0,0,0,0.202203398942031,0,0,0,0,0,1.18375320854817,0,0,4.48624715362264,0,0,0,0,0,0,0,0,0,0,0,3.31980669659857,0,0,0,0.0821154570532092,2.61870344518732,0,2.03382666702479,0,0,0.189932387867636,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,1.67569440763353,0.458320848023367,3.58936512288407,0.399358000997982,0.429226048136571,1.78537165953498,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0.674921674654501,1.5476039091159,0.121499113316049,0,0.0788057072991982,0.104909176269996,0,0,0,2.85878130549347,0.662091970365432,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0,0,2.56289790162467,1.10043013569766,1.24271716604159,0.992332043623902,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0,0.248385611765534,0,0,0.151649117541648,0,0,0,0,1.49254802886874,0,1.66441758450784,0.378806010550178,0,19.5758468751238,0.457680136793847,2.7221566277383,0.310874401165561,0.147855149989634,0,0,0.155262956876259,0.829412415681711,0,0,0.150257608997218,0,0,0.363697318405119,0,0,0,0,0.343395705182793,1.6837474438296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.371807292777007,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0.381382095467167,0,0,1.50420656698514,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,0,4.46590060550365,0.879356221798103,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0.135939465953663,0.197318320688547,0,0,2.8257513426185,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0.173858272302579,0,0,0.17071847709395,0,0.430227358820278,0,0,0.846774100381858,0.22910686854405,0,0,0,0,0,0,0.410651227424988,0,0.971421986118279,0,0,0,0,0,0,1.92935395269862,0,0,1.47088993052343,0,0.981542335574726,0,0.4226557275834,0.339854229375634,0,0.0644578879735772,0,0,0,0,0,0.917458566809082,0.716697915757256,0,0.407948941145488,0,0,2.97596014533401,14.327444487574,6.05677186973305,0,0,0,0,0.26721740526556,0,0,3.03114792872958,1.87574891109325,0,0.103432995861895,3.41174371041569,0.476128862927481,0,0,0,0.827413057616144,0.202117188958219,0.653150243690884,0.684466602170562,1.01028079521881,1.00411087549747,1.99596213927608,0,0,0,0.0898252021065869,2.34640942403454,1.34465588601153,0,4.66029741929859,1.40891655513718,0 | ||
|short_description=p6@NBL1 | |||
}} | }} |
Latest revision as of 15:33, 19 September 2015
Short description: | p6@NBL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_NBL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc009vpm.1_5end |
EntrezGene: | NBL1 |
HGNC: | 7650 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.43e-10 | 9 |
carbohydrate secreting cell | 1.43e-10 | 9 |
fibrocyte | 1.54e-09 | 3 |
tendon cell | 1.54e-09 | 3 |
extracellular matrix secreting cell | 6.41e-08 | 15 |
stromal cell | 6.85e-08 | 28 |
chondroblast | 3.54e-07 | 6 |
chondrocyte | 3.54e-07 | 6 |
fibroblast of choroid plexus | 3.88e-07 | 2 |
central nervous system pericyte | 5.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
articulation | 6.75e-12 | 8 |
skeletal joint | 6.75e-12 | 8 |
articular system | 6.75e-12 | 8 |
adult organism | 1.82e-11 | 114 |
adipose tissue | 1.15e-10 | 14 |
dense regular connective tissue | 1.54e-09 | 3 |
tendon | 1.54e-09 | 3 |
regular connective tissue | 1.54e-09 | 3 |
intervertebral cartilage | 1.61e-08 | 5 |
symphysis | 1.61e-08 | 5 |
nonsynovial joint | 1.61e-08 | 5 |
fibrous joint | 1.61e-08 | 5 |
cartilaginous joint | 1.61e-08 | 5 |
developing mesenchymal condensation | 1.61e-08 | 5 |
pre-cartilage condensation | 1.61e-08 | 5 |
cartilaginous condensation | 1.61e-08 | 5 |
cartilage element | 1.61e-08 | 5 |
post-cranial axial skeletal system | 1.61e-08 | 5 |
vertebral column | 1.61e-08 | 5 |
intervertebral disk | 1.61e-08 | 5 |
intervertebral joint | 1.61e-08 | 5 |
vascular plexus | 3.88e-07 | 2 |
ventricle of nervous system | 3.88e-07 | 2 |
choroid plexus | 3.88e-07 | 2 |
brain ventricle | 3.88e-07 | 2 |
ventricular system of brain | 3.88e-07 | 2 |
ventricular system of central nervous system | 3.88e-07 | 2 |