FFCP PHASE1:Hg19::chr1:201369034..201369048,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:201369034..201369048,-
|short_description=p5@LAD1
|description=CAGE_peak_5_at_LAD1_5end
|association_with_transcript=-298bp_to_ENST00000391967_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3898 | |EntrezGene=3898 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6472 | |HGNC=6472 | ||
|TSSclassifier=strong | |||
|UniProt=O00515 | |UniProt=O00515 | ||
|association_with_transcript=-298bp_to_ENST00000391967_5end | |||
|cluster_id=chr1:201369034..201369048,- | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_5_at_LAD1_5end | |||
|id=chr1:201369034..201369048,- | |||
|ontology_enrichment_celltype=CL:0000066!9.27e-25!254;CL:0000223!1.71e-23!59;CL:0002076!7.71e-22!43;CL:0002368!1.13e-13!13;CL:0002251!5.03e-10!21;CL:0002202!2.34e-09!9;CL:0002632!2.34e-09!9;CL:0000453!2.48e-09!5;CL:0002159!1.44e-07!13;CL:1000449!4.14e-07!16;CL:0000244!8.99e-07!4;CL:0000731!8.99e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000453;5.43e-20;5!CL:0002076;1.46e-11;42!CL:0000990;6.13e-11;8!CL:0000451;7.09e-09;10!CL:0001014;8.97e-09;2!CL:0001016;8.97e-09;2!CL:0000244;1.50e-08;4!CL:0000731;1.50e-08;4!CL:0002251;8.89e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,5.16e-20,5;CL:0000223,8.86e-16,58;CL:0002076,2.52e-13,42;CL:0000990,5.96e-11,8;CL:0000066,1.14e-10,253;CL:0000451,6.94e-09,10;CL:0001014,8.49e-09,2;CL:0001016,8.49e-09,2;CL:0000244,9.08e-09,4;CL:0000731,9.08e-09,4;CL:0002251,8.66e-08,20 | |||
|ontology_enrichment_development_v019=CL:0000223;2.73e-11;58!UBERON:0003104;4.90e-08;31!UBERON:0009497;3.10e-07;13 | |||
|ontology_enrichment_disease=DOID:305!2.81e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.06e-26!169;UBERON:0000925!2.06e-26!169;UBERON:0006595!2.06e-26!169;UBERON:0001007!2.56e-19!155;UBERON:0001555!2.56e-19!155;UBERON:0007026!2.56e-19!155;UBERON:0004921!1.78e-17!129;UBERON:0004185!1.78e-17!129;UBERON:0000077!6.86e-15!130;UBERON:0005911!1.28e-14!82;UBERON:0000466!1.12e-13!126;UBERON:0005177!2.38e-11!107;UBERON:0006554!3.36e-11!44;UBERON:0001008!8.34e-11!45;UBERON:0000464!5.55e-10!104;UBERON:0001004!2.67e-09!72;UBERON:0003929!2.72e-09!54;UBERON:0001041!6.37e-09!98;UBERON:0009569!2.61e-08!113;UBERON:0007196!2.70e-08!14;UBERON:0001558!2.70e-08!14;UBERON:0000344!4.39e-08!12;UBERON:0003104!5.25e-08!238;UBERON:0009142!5.25e-08!238;UBERON:0005409!8.16e-08!35;UBERON:0000160!1.39e-07!27;UBERON:0000365!1.49e-07!5;UBERON:0000058!2.49e-07!26;UBERON:0005172!3.75e-07!55;UBERON:0005173!3.75e-07!55;UBERON:0004211!4.14e-07!16;UBERON:0001285!4.14e-07!16;UBERON:0007684!4.14e-07!16;UBERON:0003220!4.14e-07!16;UBERON:0004208!4.14e-07!16;UBERON:0001046!5.85e-07!19;UBERON:0000161!8.12e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.88e-12;17!UBERON:0005409;1.24e-11;22!UBERON:0006554;6.46e-10;30!UBERON:0001008;6.46e-10;30!UBERON:0000485;1.74e-08;7!UBERON:0003929;2.56e-08;7!UBERON:0000059;2.87e-08;11!UBERON:0004921;6.79e-08;33!UBERON:0003350;2.78e-07;8!UBERON:0000486;4.31e-07;12!UBERON:0000365;6.40e-07;5!UBERON:0004907;6.40e-07;5!UBERON:0001155;6.64e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.80e-12,17;UBERON:0004119,7.64e-12,160;UBERON:0000925,7.64e-12,160;UBERON:0006595,7.64e-12,160;UBERON:0005409,3.93e-10,25;UBERON:0001007,1.94e-09,145;UBERON:0001555,1.94e-09,145;UBERON:0007026,1.94e-09,145;UBERON:0005911,7.60e-09,82;UBERON:0006554,1.44e-08,47;UBERON:0004921,1.82e-08,118;UBERON:0001008,2.45e-08,48;UBERON:0000059,2.68e-08,11;UBERON:0003929,2.48e-07,54;UBERON:0005172,2.54e-07,54;UBERON:0005173,2.54e-07,54;UBERON:0003350,2.95e-07,8;UBERON:0000365,4.30e-07,5;UBERON:0004907,5.90e-07,5;UBERON:0001155,6.15e-07,9 | |||
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| ||
|short_description=p5@LAD1 | |||
}} | }} |
Latest revision as of 17:49, 19 September 2015
Short description: | p5@LAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LAD1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -298bp_to_ENST00000391967_5end |
EntrezGene: | LAD1 |
HGNC: | 6472 |
UniProt: | O00515 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 5.16e-20 | 5 |
endodermal cell | 8.86e-16 | 58 |
endo-epithelial cell | 2.52e-13 | 42 |
conventional dendritic cell | 5.96e-11 | 8 |
epithelial cell | 1.14e-10 | 253 |
dendritic cell | 6.94e-09 | 10 |
CD1a-positive Langerhans cell | 8.49e-09 | 2 |
immature CD1a-positive Langerhans cell | 8.49e-09 | 2 |
transitional epithelial cell | 9.08e-09 | 4 |
urothelial cell | 9.08e-09 | 4 |
epithelial cell of alimentary canal | 8.66e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.80e-12 | 17 |
endoderm-derived structure | 7.64e-12 | 160 |
endoderm | 7.64e-12 | 160 |
presumptive endoderm | 7.64e-12 | 160 |
gastrointestinal system | 3.93e-10 | 25 |
digestive system | 1.94e-09 | 145 |
digestive tract | 1.94e-09 | 145 |
primitive gut | 1.94e-09 | 145 |
endo-epithelium | 7.60e-09 | 82 |
urinary system structure | 1.44e-08 | 47 |
subdivision of digestive tract | 1.82e-08 | 118 |
renal system | 2.45e-08 | 48 |
large intestine | 2.68e-08 | 11 |
gut epithelium | 2.48e-07 | 54 |
abdomen element | 2.54e-07 | 54 |
abdominal segment element | 2.54e-07 | 54 |
epithelium of mucosa | 2.95e-07 | 8 |
urothelium | 4.30e-07 | 5 |
lower digestive tract | 5.90e-07 | 5 |
colon | 6.15e-07 | 9 |