FFCP PHASE1:Hg19::chr18:47901408..47901430,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=220134 | |EntrezGene=220134 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28109 | |HGNC=28109 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000488454,ENST00000494518_5end | |association_with_transcript=0bp_to_ENST00000488454,ENST00000494518_5end | ||
|cluster_id=chr18:47901408..47901430,+ | |||
|coexpression_cluster_id=C3724 | |coexpression_cluster_id=C3724 | ||
|description=CAGE_peak_2_at_SKA1_5end | |description=CAGE_peak_2_at_SKA1_5end | ||
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|ontology_enrichment_celltype=CL:0000548!1.06e-19!679;CL:0000004!1.06e-19!679;CL:0000255!1.06e-19!679;CL:0000012!3.15e-19!682;CL:0000066!1.58e-16!254;CL:0000003!2.80e-11!722;CL:0002321!6.33e-10!248;CL:0000220!1.07e-09!246;CL:0000063!1.57e-09!578;CL:0000144!4.95e-09!625;CL:0000055!2.55e-08!180 | |ontology_enrichment_celltype=CL:0000548!1.06e-19!679;CL:0000004!1.06e-19!679;CL:0000255!1.06e-19!679;CL:0000012!3.15e-19!682;CL:0000066!1.58e-16!254;CL:0000003!2.80e-11!722;CL:0002321!6.33e-10!248;CL:0000220!1.07e-09!246;CL:0000063!1.57e-09!578;CL:0000144!4.95e-09!625;CL:0000055!2.55e-08!180 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.16e-15,253;CL:0002321,1.00e-08,250 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:14566!4.17e-41!239;DOID:162!4.50e-41!235;DOID:0050686!2.20e-24!137;DOID:2531!1.24e-23!51;DOID:0060083!1.24e-23!51;DOID:1240!5.54e-18!39;DOID:0050687!2.93e-15!143;DOID:8692!2.11e-13!31;DOID:305!4.77e-11!106 | |ontology_enrichment_disease=DOID:14566!4.17e-41!239;DOID:162!4.50e-41!235;DOID:0050686!2.20e-24!137;DOID:2531!1.24e-23!51;DOID:0060083!1.24e-23!51;DOID:1240!5.54e-18!39;DOID:0050687!2.93e-15!143;DOID:8692!2.11e-13!31;DOID:305!4.77e-11!106 | ||
|ontology_enrichment_disease_v019=DOID:2531;5.87e-15;51!DOID:0060083;5.87e-15;51!DOID:1240;6.49e-15;39!DOID:8692;1.33e-13;31!DOID:0050686;6.94e-07;137!DOID:0060058;7.57e-07;10 | |ontology_enrichment_disease_v019=DOID:2531;5.87e-15;51!DOID:0060083;5.87e-15;51!DOID:1240;6.49e-15;39!DOID:8692;1.33e-13;31!DOID:0050686;6.94e-07;137!DOID:0060058;7.57e-07;10 | ||
|ontology_enrichment_disease_v019_2=DOID:162,1.68e-41,235;DOID:14566,2.72e-41,239;DOID:0050686,1.43e-24,137;DOID:2531,1.83e-24,51;DOID:0060083,1.83e-24,51;DOID:1240,1.33e-18,39;DOID:0050687,4.70e-15,143;DOID:8692,7.58e-14,31;DOID:305,9.16e-11,106;DOID:0060058,7.01e-07,10 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p2@SKA1 | |short_description=p2@SKA1 | ||
}} | }} |
Latest revision as of 18:24, 19 September 2015
Short description: | p2@SKA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SKA1_5end |
Coexpression cluster: | C3724_retinoblastoma_Reticulocytes_acute_adrenal_NK_myxofibrosarcoma_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000488454, ENST00000494518_5end |
EntrezGene: | SKA1 |
HGNC: | 28109 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.16e-15 | 253 |
embryonic cell | 1.00e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.68e-41 | 235 |
disease of cellular proliferation | 2.72e-41 | 239 |
organ system cancer | 1.43e-24 | 137 |
hematologic cancer | 1.83e-24 | 51 |
immune system cancer | 1.83e-24 | 51 |
leukemia | 1.33e-18 | 39 |
cell type cancer | 4.70e-15 | 143 |
myeloid leukemia | 7.58e-14 | 31 |
carcinoma | 9.16e-11 | 106 |
lymphoma | 7.01e-07 | 10 |