FFCP PHASE1:Hg19::chr17:37824531..37824553,+: Difference between revisions
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|id=chr17:37824531..37824553,+
|short_description=p6@PNMT
|description=CAGE_peak_6_at_PNMT_5end
|association_with_transcript=24bp_to_ENST00000269582,NM_002686,uc002...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5409 | |EntrezGene=5409 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9160 | |HGNC=9160 | ||
|TSSclassifier=strong | |||
|UniProt=P11086 | |UniProt=P11086 | ||
|association_with_transcript=24bp_to_ENST00000269582,NM_002686,uc002hsi.1_5end | |||
|cluster_id=chr17:37824531..37824553,+ | |||
|coexpression_cluster_id=C477 | |||
|description=CAGE_peak_6_at_PNMT_5end | |||
|id=chr17:37824531..37824553,+ | |||
|ontology_enrichment_celltype=CL:0000349!1.66e-09!3;CL:0002577!1.66e-09!3;CL:0002536!8.00e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.99e-49;19!CL:0002577;1.28e-36;3!CL:0002536;9.00e-25;2!CL:0002541;2.03e-16;3!CL:0002575;4.17e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.55e-49,19;CL:0002577,1.29e-36,3;CL:0002536,9.02e-25,2;CL:0002541,2.04e-16,3;CL:0002575,3.48e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;4.17e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.06e-24!115;UBERON:0005631!7.48e-18!14;UBERON:0000158!7.48e-18!14;UBERON:0002020!6.25e-16!34;UBERON:0003528!6.25e-16!34;UBERON:0001869!2.79e-15!32;UBERON:0001049!1.48e-14!57;UBERON:0005068!1.48e-14!57;UBERON:0006241!1.48e-14!57;UBERON:0007135!1.48e-14!57;UBERON:0001893!3.58e-14!34;UBERON:0003124!8.76e-14!7;UBERON:0002780!8.12e-13!41;UBERON:0001890!8.12e-13!41;UBERON:0006240!8.12e-13!41;UBERON:0002791!9.38e-13!33;UBERON:0003080!2.03e-12!42;UBERON:0002616!2.14e-12!59;UBERON:0000478!1.34e-11!24;UBERON:0001987!3.07e-11!4;UBERON:0004340!3.07e-11!4;UBERON:0000955!6.29e-11!69;UBERON:0006238!6.29e-11!69;UBERON:0003075!9.53e-11!86;UBERON:0007284!9.53e-11!86;UBERON:0005743!1.00e-10!86;UBERON:0002619!1.51e-10!22;UBERON:0001017!1.82e-10!82;UBERON:0002346!5.27e-10!90;UBERON:0001950!9.18e-10!20;UBERON:0003056!2.01e-09!61;UBERON:0002308!2.14e-09!9;UBERON:0000125!2.14e-09!9;UBERON:0000073!3.67e-09!94;UBERON:0001016!3.67e-09!94;UBERON:0000956!4.67e-09!25;UBERON:0000203!4.67e-09!25;UBERON:0000064!6.58e-09!219;UBERON:0000153!3.54e-07!129;UBERON:0007811!3.54e-07!129;UBERON:0002420!7.66e-07!9;UBERON:0007245!7.66e-07!9;UBERON:0010009!7.66e-07!9;UBERON:0010011!7.66e-07!9;UBERON:0000454!7.66e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.23e-39;24!UBERON:0005631;3.72e-29;10!UBERON:0000158;3.72e-29;10!UBERON:0001987;1.18e-27;4!UBERON:0003124;2.03e-16;3!UBERON:0000920;2.03e-16;3!UBERON:0000305;8.73e-16;7!UBERON:0001000;6.05e-13;1!UBERON:0005352;6.05e-13;1!UBERON:0001873;4.17e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.61e-53,14;UBERON:0000158,7.61e-53,14;UBERON:0003124,4.20e-42,7;UBERON:0000478,9.43e-39,24;UBERON:0001987,1.18e-27,4;UBERON:0004340,1.18e-27,4;UBERON:0000920,2.04e-16,3;UBERON:0000305,1.02e-15,7;UBERON:0004871,7.84e-14,8;UBERON:0001000,3.33e-13,1;UBERON:0005352,3.33e-13,1;UBERON:0004923,1.34e-10,66;UBERON:0004175,6.50e-08,25;UBERON:0001873,5.28e-07,2;UBERON:0010122,5.28e-07,2 | |||
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| ||
|short_description=p6@PNMT | |||
}} | }} |
Latest revision as of 22:29, 19 September 2015
Short description: | p6@PNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PNMT_5end |
Coexpression cluster: | C477_Mesenchymal_Amniotic_Placental_chorionic_umbilical_Cardiac_acute |
Association with transcript: | 24bp_to_ENST00000269582, NM_002686, uc002hsi.1_5end |
EntrezGene: | PNMT |
HGNC: | 9160 |
UniProt: | P11086 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.55e-49 | 19 |
placental epithelial cell | 1.29e-36 | 3 |
amniotic epithelial cell | 9.02e-25 | 2 |
chorionic membrane mesenchymal stem cell | 2.04e-16 | 3 |
central nervous system pericyte | 3.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.61e-53 | 14 |
membranous layer | 7.61e-53 | 14 |
chorion | 4.20e-42 | 7 |
extraembryonic structure | 9.43e-39 | 24 |
placenta | 1.18e-27 | 4 |
allantois | 1.18e-27 | 4 |
egg chorion | 2.04e-16 | 3 |
amnion | 1.02e-15 | 7 |
somatic layer of lateral plate mesoderm | 7.84e-14 | 8 |
vas deferens | 3.33e-13 | 1 |
spermatic cord | 3.33e-13 | 1 |
organ component layer | 1.34e-10 | 66 |
internal genitalia | 6.50e-08 | 25 |
caudate nucleus | 5.28e-07 | 2 |
future caudate nucleus | 5.28e-07 | 2 |