FFCP PHASE1:Hg19::chr19:55658262..55658279,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:55658262..55658279,-
|short_description=p5@TNNT1
|description=CAGE_peak_5_at_TNNT1_5end
|association_with_transcript=37bp_to_uc002qiz.3,uc002qja.3_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7138 | |EntrezGene=7138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11948 | |HGNC=11948 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=37bp_to_uc002qiz.3,uc002qja.3_5end | |||
|cluster_id=chr19:55658262..55658279,- | |||
|description=CAGE_peak_5_at_TNNT1_5end | |||
|id=chr19:55658262..55658279,- | |||
|ontology_enrichment_celltype=CL:0000066!3.15e-22!254;CL:0000039!1.74e-07!7;CL:0000586!1.74e-07!7;CL:0000076!4.06e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.70e-12;5!CL:0000039;1.92e-09;7!CL:0000586;1.92e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.44e-13,5;CL:0000066,1.93e-10,253;CL:0000039,1.22e-09,7;CL:0000586,1.22e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.60e-09;10!UBERON:0005564;7.60e-09;10 | |||
|ontology_enrichment_disease=DOID:162!3.16e-42!235;DOID:14566!2.45e-40!239;DOID:0050687!8.27e-36!143;DOID:305!6.30e-31!106;DOID:0050686!5.45e-20!137;DOID:299!1.28e-09!25;DOID:0050615!7.09e-07!16;DOID:1115!7.90e-07!20 | |||
|ontology_enrichment_disease_v019=DOID:299;9.52e-10;25!DOID:1115;1.43e-08;20!DOID:170;8.46e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.56e-23,143;DOID:162,4.04e-22,235;DOID:14566,2.41e-21,239;DOID:305,1.04e-18,106;DOID:0050686,1.80e-11,137;DOID:299,8.54e-10,25;DOID:1115,2.01e-08,20;DOID:170,8.79e-07,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002369;3.94e-08;3!UBERON:0001235;3.94e-08;3!UBERON:0006858;3.94e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002369,5.26e-08,3;UBERON:0001235,5.26e-08,3;UBERON:0006858,5.26e-08,3;UBERON:0003133,2.72e-07,48;UBERON:0005156,3.77e-07,59;UBERON:0000990,3.77e-07,59 | |||
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| ||
|short_description=p5@TNNT1 | |||
}} | }} |
Latest revision as of 23:55, 19 September 2015
Short description: | p5@TNNT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TNNT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 37bp_to_uc002qiz.3, uc002qja.3_5end |
EntrezGene: | TNNT1 |
HGNC: | 11948 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.44e-13 | 5 |
epithelial cell | 1.93e-10 | 253 |
germ line cell | 1.22e-09 | 7 |
germ cell | 1.22e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
adrenal gland | 5.26e-08 | 3 |
adrenal cortex | 5.26e-08 | 3 |
adrenal/interrenal gland | 5.26e-08 | 3 |
reproductive organ | 2.72e-07 | 48 |
reproductive structure | 3.77e-07 | 59 |
reproductive system | 3.77e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.56e-23 | 143 |
cancer | 4.04e-22 | 235 |
disease of cellular proliferation | 2.41e-21 | 239 |
carcinoma | 1.04e-18 | 106 |
organ system cancer | 1.80e-11 | 137 |
adenocarcinoma | 8.54e-10 | 25 |
sarcoma | 2.01e-08 | 20 |
endocrine gland cancer | 8.79e-07 | 6 |