FFCP PHASE1:Hg19::chr19:55658281..55658357,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:55658281..55658357,-
|short_description=p2@TNNT1
|description=CAGE_peak_2_at_TNNT1_5end
|association_with_transcript=0bp_to_uc002qiz.3,uc002qja.3_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7138 | |EntrezGene=7138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11948 | |HGNC=11948 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002qiz.3,uc002qja.3_5end | |||
|cluster_id=chr19:55658281..55658357,- | |||
|description=CAGE_peak_2_at_TNNT1_5end | |||
|id=chr19:55658281..55658357,- | |||
|ontology_enrichment_celltype=CL:0000066!2.16e-36!254;CL:0000548!7.32e-13!679;CL:0000004!7.32e-13!679;CL:0000255!7.32e-13!679;CL:0000012!2.12e-12!682;CL:0002076!9.69e-10!43;CL:0000063!1.70e-09!578;CL:0002321!1.45e-08!248;CL:0000223!1.81e-08!59;CL:0000082!2.83e-08!19;CL:0000220!4.48e-08!246;CL:0000076!7.85e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.08e-09;42!CL:0000082;8.57e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.30e-38,253;CL:0002076,1.42e-11,42;CL:0000223,1.38e-09,58;CL:0000076,3.09e-09,63;CL:0000082,7.09e-08,19;CL:0002321,1.79e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.95e-43!235;DOID:14566!9.88e-42!239;DOID:0050687!8.14e-33!143;DOID:305!6.11e-28!106;DOID:0050686!8.05e-21!137;DOID:0050615!2.31e-07!16;DOID:1324!2.67e-07!15;DOID:1749!5.03e-07!14;DOID:1115!8.05e-07!20 | |||
|ontology_enrichment_disease_v019=DOID:0050687;2.86e-09;143!DOID:305;2.10e-08;106!DOID:1749;4.74e-08;14!DOID:1115;1.12e-07;20!DOID:299;1.87e-07;25!DOID:0050615;2.78e-07;16!DOID:8692;3.16e-07;31!DOID:1324;3.67e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.35e-51,235;DOID:14566,3.00e-48,239;DOID:0050687,4.75e-36,143;DOID:305,2.17e-29,106;DOID:0050686,4.57e-24,137;DOID:1749,3.37e-08,14;DOID:1115,1.27e-07,20;DOID:299,1.71e-07,25;DOID:8692,2.23e-07,31;DOID:0050615,2.53e-07,16;DOID:1324,3.25e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0004802!2.83e-08!19;UBERON:0000115!2.83e-08!19;UBERON:0005153!1.38e-07!37;UBERON:0005157!2.52e-07!51;UBERON:0002048!4.81e-07!22;UBERON:0000117!4.81e-07!22;UBERON:0000171!4.81e-07!22;UBERON:0000170!4.81e-07!22;UBERON:0005597!4.81e-07!22;UBERON:0000118!4.81e-07!22;UBERON:0008947!4.84e-07!38;UBERON:0003258!4.84e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0004807;5.15e-09;22!UBERON:0005911;3.01e-08;36!UBERON:0004802;8.57e-08;19!UBERON:0000115;8.57e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,7.09e-08,19;UBERON:0000115,7.09e-08,19;UBERON:0005153,5.40e-07,37;UBERON:0005177,6.73e-07,101;UBERON:0008947,6.98e-07,38;UBERON:0003258,6.98e-07,38 | |||
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| ||
|short_description=p2@TNNT1 | |||
}} | }} |
Latest revision as of 23:56, 19 September 2015
Short description: | p2@TNNT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TNNT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc002qiz.3, uc002qja.3_5end |
EntrezGene: | TNNT1 |
HGNC: | 11948 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.30e-38 | 253 |
endo-epithelial cell | 1.42e-11 | 42 |
endodermal cell | 1.38e-09 | 58 |
squamous epithelial cell | 3.09e-09 | 63 |
epithelial cell of lung | 7.09e-08 | 19 |
embryonic cell | 1.79e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 7.09e-08 | 19 |
lung epithelium | 7.09e-08 | 19 |
epithelial bud | 5.40e-07 | 37 |
trunk region element | 6.73e-07 | 101 |
respiratory primordium | 6.98e-07 | 38 |
endoderm of foregut | 6.98e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.35e-51 | 235 |
disease of cellular proliferation | 3.00e-48 | 239 |
cell type cancer | 4.75e-36 | 143 |
carcinoma | 2.17e-29 | 106 |
organ system cancer | 4.57e-24 | 137 |
squamous cell carcinoma | 3.37e-08 | 14 |
sarcoma | 1.27e-07 | 20 |
adenocarcinoma | 1.71e-07 | 25 |
myeloid leukemia | 2.23e-07 | 31 |
respiratory system cancer | 2.53e-07 | 16 |
lung cancer | 3.25e-07 | 15 |