FFCP PHASE1:Hg19::chr19:55720862..55720880,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5794 | |EntrezGene=5794 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9672 | |HGNC=9672 | ||
|TSSclassifier=strong | |||
|UniProt=C9JCH2,Q9HD43 | |UniProt=C9JCH2,Q9HD43 | ||
|association_with_transcript=0bp_to_ENST00000263434,ENST00000376350,NM_001161440,NM_002842,uc002qjq.2,uc002qjs.2,uc010esv.2_5end | |association_with_transcript=0bp_to_ENST00000263434,ENST00000376350,NM_001161440,NM_002842,uc002qjq.2,uc002qjs.2,uc010esv.2_5end | ||
|cluster_id=chr19:55720862..55720880,- | |||
|coexpression_cluster_id=C1341 | |coexpression_cluster_id=C1341 | ||
|description=CAGE_peak_1_at_PTPRH_5end | |description=CAGE_peak_1_at_PTPRH_5end | ||
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|ontology_enrichment_celltype=CL:0000066!6.42e-13!254;CL:0000223!3.01e-08!59 | |ontology_enrichment_celltype=CL:0000066!6.42e-13!254;CL:0000223!3.01e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:1000415;1.44e-08;2!CL:1000497;2.13e-07;17!CL:0002518;2.13e-07;17 | |ontology_enrichment_celltype_v019=CL:1000415;1.44e-08;2!CL:1000497;2.13e-07;17!CL:0002518;2.13e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:1000415,1.39e-08,2;CL:1000497,2.18e-07,17;CL:0002518,2.18e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006595;3.31e-08;86!UBERON:0009497;1.85e-07;13 | |ontology_enrichment_development_v019=UBERON:0006595;3.31e-08;86!UBERON:0009497;1.85e-07;13 | ||
|ontology_enrichment_disease=DOID:305!3.16e-25!106;DOID:0050687!3.91e-19!143;DOID:162!2.46e-15!235;DOID:14566!1.31e-14!239;DOID:299!1.49e-11!25;DOID:7!8.81e-07!39 | |ontology_enrichment_disease=DOID:305!3.16e-25!106;DOID:0050687!3.91e-19!143;DOID:162!2.46e-15!235;DOID:14566!1.31e-14!239;DOID:299!1.49e-11!25;DOID:7!8.81e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:299;1.41e-11;25!DOID:4929;2.61e-09;2!DOID:3493;5.50e-09;2!DOID:3119;6.22e-07;14 | |ontology_enrichment_disease_v019=DOID:299;1.41e-11;25!DOID:4929;2.61e-09;2!DOID:3493;5.50e-09;2!DOID:3119;6.22e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:305,8.15e-17,106;DOID:0050687,4.41e-12,143;DOID:299,1.46e-11,25;DOID:4929,2.72e-09,2;DOID:3493,6.59e-09,2;DOID:162,1.08e-07,235;DOID:14566,2.12e-07,239;DOID:3119,6.23e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004921!2.61e-18!129;UBERON:0004185!2.61e-18!129;UBERON:0004119!4.59e-18!169;UBERON:0000925!4.59e-18!169;UBERON:0006595!4.59e-18!169;UBERON:0001007!7.79e-18!155;UBERON:0001555!7.79e-18!155;UBERON:0007026!7.79e-18!155;UBERON:0005409!3.37e-16!35;UBERON:0000077!5.32e-14!130;UBERON:0000466!1.97e-11!126;UBERON:0000160!1.31e-10!27;UBERON:0005177!1.32e-09!107;UBERON:0002294!4.13e-09!7;UBERON:0001173!4.13e-09!7;UBERON:0004912!4.13e-09!7;UBERON:0001041!7.74e-09!98;UBERON:0000464!1.65e-08!104;UBERON:0002075!1.17e-07!18;UBERON:0000945!1.20e-07!8;UBERON:0010039!1.20e-07!8;UBERON:0005911!1.24e-07!82;UBERON:0003104!2.81e-07!238;UBERON:0009142!2.81e-07!238;UBERON:0005172!2.94e-07!55;UBERON:0005173!2.94e-07!55;UBERON:0009497!9.17e-07!25;UBERON:0000015!9.17e-07!25;UBERON:0002423!9.17e-07!25;UBERON:0006235!9.17e-07!25;UBERON:0004161!9.17e-07!25 | |ontology_enrichment_uberon=UBERON:0004921!2.61e-18!129;UBERON:0004185!2.61e-18!129;UBERON:0004119!4.59e-18!169;UBERON:0000925!4.59e-18!169;UBERON:0006595!4.59e-18!169;UBERON:0001007!7.79e-18!155;UBERON:0001555!7.79e-18!155;UBERON:0007026!7.79e-18!155;UBERON:0005409!3.37e-16!35;UBERON:0000077!5.32e-14!130;UBERON:0000466!1.97e-11!126;UBERON:0000160!1.31e-10!27;UBERON:0005177!1.32e-09!107;UBERON:0002294!4.13e-09!7;UBERON:0001173!4.13e-09!7;UBERON:0004912!4.13e-09!7;UBERON:0001041!7.74e-09!98;UBERON:0000464!1.65e-08!104;UBERON:0002075!1.17e-07!18;UBERON:0000945!1.20e-07!8;UBERON:0010039!1.20e-07!8;UBERON:0005911!1.24e-07!82;UBERON:0003104!2.81e-07!238;UBERON:0009142!2.81e-07!238;UBERON:0005172!2.94e-07!55;UBERON:0005173!2.94e-07!55;UBERON:0009497!9.17e-07!25;UBERON:0000015!9.17e-07!25;UBERON:0002423!9.17e-07!25;UBERON:0006235!9.17e-07!25;UBERON:0004161!9.17e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.62e-27;22!UBERON:0000160;7.10e-21;17!UBERON:0002294;3.62e-20;7!UBERON:0001173;3.62e-20;7!UBERON:0004921;1.60e-15;33!UBERON:0002108;1.04e-13;4!UBERON:0000059;1.04e-12;11!UBERON:0002110;1.59e-12;3!UBERON:0002075;5.91e-10;18!UBERON:0002394;9.39e-10;4!UBERON:0003928;9.39e-10;4!UBERON:0002423;6.99e-09;25!UBERON:0000945;9.05e-08;5!UBERON:0010039;9.05e-08;5!UBERON:0001155;1.58e-07;9!UBERON:0004907;1.63e-07;5!UBERON:0005172;2.54e-07;52!UBERON:0005173;2.54e-07;52 | |ontology_enrichment_uberon_v019=UBERON:0005409;4.62e-27;22!UBERON:0000160;7.10e-21;17!UBERON:0002294;3.62e-20;7!UBERON:0001173;3.62e-20;7!UBERON:0004921;1.60e-15;33!UBERON:0002108;1.04e-13;4!UBERON:0000059;1.04e-12;11!UBERON:0002110;1.59e-12;3!UBERON:0002075;5.91e-10;18!UBERON:0002394;9.39e-10;4!UBERON:0003928;9.39e-10;4!UBERON:0002423;6.99e-09;25!UBERON:0000945;9.05e-08;5!UBERON:0010039;9.05e-08;5!UBERON:0001155;1.58e-07;9!UBERON:0004907;1.63e-07;5!UBERON:0005172;2.54e-07;52!UBERON:0005173;2.54e-07;52 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,6.39e-32,25;UBERON:0000160,6.33e-21,17;UBERON:0002294,1.63e-15,9;UBERON:0001173,1.63e-15,9;UBERON:0004912,1.63e-15,9;UBERON:0002108,1.06e-13,4;UBERON:0004921,1.64e-13,118;UBERON:0001007,2.17e-13,145;UBERON:0001555,2.17e-13,145;UBERON:0007026,2.17e-13,145;UBERON:0000059,9.18e-13,11;UBERON:0000945,1.41e-12,8;UBERON:0010039,1.41e-12,8;UBERON:0002110,1.53e-12,3;UBERON:0006242,1.53e-12,3;UBERON:0004119,1.52e-11,160;UBERON:0000925,1.52e-11,160;UBERON:0006595,1.52e-11,160;UBERON:0005172,8.52e-11,54;UBERON:0005173,8.52e-11,54;UBERON:0005177,1.70e-10,101;UBERON:0002075,4.99e-10,18;UBERON:0002417,2.05e-09,60;UBERON:0000916,2.05e-09,60;UBERON:0009497,7.24e-09,25;UBERON:0000015,7.24e-09,25;UBERON:0002423,7.24e-09,25;UBERON:0006235,7.24e-09,25;UBERON:0004161,7.24e-09,25;UBERON:0004907,1.45e-07,5;UBERON:0001155,1.54e-07,9;UBERON:0009569,5.68e-07,112 | |||
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| ||
|short_description=p1@PTPRH | |short_description=p1@PTPRH | ||
}} | }} |
Latest revision as of 00:51, 20 September 2015
Short description: | p1@PTPRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPRH_5end |
Coexpression cluster: | C1341_smallcell_small_gall_colon_temporal_signet_adenocarcinoma |
Association with transcript: | 0bp_to_ENST00000263434, ENST00000376350, NM_001161440, NM_002842, uc002qjq.2, uc002qjs.2, uc010esv.2_5end |
EntrezGene: | PTPRH |
HGNC: | 9672 |
UniProt: | C9JCH2Q9HD43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 1.39e-08 | 2 |
kidney cell | 2.18e-07 | 17 |
kidney epithelial cell | 2.18e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 6.39e-32 | 25 |
intestine | 6.33e-21 | 17 |
biliary system | 1.63e-15 | 9 |
biliary tree | 1.63e-15 | 9 |
biliary bud | 1.63e-15 | 9 |
small intestine | 1.06e-13 | 4 |
subdivision of digestive tract | 1.64e-13 | 118 |
digestive system | 2.17e-13 | 145 |
digestive tract | 2.17e-13 | 145 |
primitive gut | 2.17e-13 | 145 |
large intestine | 9.18e-13 | 11 |
stomach | 1.41e-12 | 8 |
food storage organ | 1.41e-12 | 8 |
gallbladder | 1.53e-12 | 3 |
gall bladder primordium | 1.53e-12 | 3 |
endoderm-derived structure | 1.52e-11 | 160 |
endoderm | 1.52e-11 | 160 |
presumptive endoderm | 1.52e-11 | 160 |
abdomen element | 8.52e-11 | 54 |
abdominal segment element | 8.52e-11 | 54 |
trunk region element | 1.70e-10 | 101 |
viscus | 4.99e-10 | 18 |
abdominal segment of trunk | 2.05e-09 | 60 |
abdomen | 2.05e-09 | 60 |
epithelium of foregut-midgut junction | 7.24e-09 | 25 |
anatomical boundary | 7.24e-09 | 25 |
hepatobiliary system | 7.24e-09 | 25 |
foregut-midgut junction | 7.24e-09 | 25 |
septum transversum | 7.24e-09 | 25 |
lower digestive tract | 1.45e-07 | 5 |
colon | 1.54e-07 | 9 |
subdivision of trunk | 5.68e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.15e-17 | 106 |
cell type cancer | 4.41e-12 | 143 |
adenocarcinoma | 1.46e-11 | 25 |
tubular adenocarcinoma | 2.72e-09 | 2 |
signet ring cell adenocarcinoma | 6.59e-09 | 2 |
cancer | 1.08e-07 | 235 |
disease of cellular proliferation | 2.12e-07 | 239 |
gastrointestinal system cancer | 6.23e-07 | 14 |