FFCP PHASE1:Hg19::chr19:56048484..56048487,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:56048484..56048487,-
|short_description=p3@SBK2
|description=CAGE_peak_3_at_SBK2_5end
|association_with_transcript=-28bp_to_ENST00000413299_5end
|EntrezG...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=646643 | |EntrezGene=646643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34416 | |HGNC=34416 | ||
|TSSclassifier=strong | |||
|UniProt=P0C263 | |UniProt=P0C263 | ||
|association_with_transcript=-28bp_to_ENST00000413299_5end | |||
|cluster_id=chr19:56048484..56048487,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_3_at_SBK2_5end | |||
|id=chr19:56048484..56048487,- | |||
|ontology_enrichment_celltype=CL:0002322!1.68e-18!5 | |||
|ontology_enrichment_celltype_v019=CL:0000138;1.22e-09;6!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.22e-09,6;CL:0000138,1.22e-09,6;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.42e-50;1!UBERON:0005062;1.21e-13;4!UBERON:0007284;1.21e-13;4 | |||
|ontology_enrichment_disease=DOID:3371!1.46e-07!1;DOID:4549!1.46e-07!1;DOID:5861!1.46e-07!1;DOID:6496!1.46e-07!1;DOID:6193!2.10e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.46e-50,1;DOID:4549,1.46e-50,1;DOID:5861,1.46e-50,1;DOID:6496,1.46e-50,1;DOID:201,1.22e-09,6;DOID:0060100,1.22e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0000341!9.55e-13!2;UBERON:0002079!1.55e-07!1;UBERON:0002135!1.65e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002079;2.42e-50;1!UBERON:0002135;5.12e-50;1!UBERON:0002081;5.56e-26;2!UBERON:0002133;8.10e-26;2!UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0004151;8.00e-18;3!UBERON:0003978;1.03e-17;3!UBERON:0000946;1.03e-17;3!UBERON:0000948;4.64e-10;22!UBERON:0007100;5.60e-09;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002079,2.42e-50,1;UBERON:0002135,3.99e-50,1;UBERON:0002081,5.56e-26,2;UBERON:0010227,5.56e-26,2;UBERON:0002133,7.14e-26,2;UBERON:0002418,6.76e-18,3;UBERON:0004755,6.76e-18,3;UBERON:0004151,8.00e-18,3;UBERON:0003978,9.46e-18,3;UBERON:0009751,9.46e-18,3;UBERON:0000946,9.46e-18,3;UBERON:0002523,9.46e-18,3;UBERON:0005983,9.46e-18,3;UBERON:0002165,9.46e-18,3;UBERON:0002062,9.46e-18,3;UBERON:0007280,9.46e-18,3;UBERON:0000948,2.56e-09,24;UBERON:0005498,2.56e-09,24;UBERON:0004140,2.56e-09,24;UBERON:0009881,2.56e-09,24;UBERON:0004141,2.56e-09,24;UBERON:0003084,2.56e-09,24;UBERON:0007005,2.56e-09,24;UBERON:0004139,2.56e-09,24;UBERON:0004291,2.56e-09,24;UBERON:0007100,2.14e-08,27;UBERON:0004797,2.18e-08,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0.0969890164884194,6.97223400862852,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95497680890578,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0.0524545881349981,0,0,0,3.57347663186684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,0,1.77377901416012,0,0,0.275684698604535,0,0,0,0,0,0.426467963801962,0.23806443146374,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0.0969890164884194,6.97223400862852,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95497680890578,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0.0524545881349981,0,0,0,3.57347663186684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,0,1.77377901416012,0,0,0.275684698604535,0,0,0,0,0,0.426467963801962,0.23806443146374,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@SBK2 | |||
}} | }} |
Latest revision as of 02:25, 20 September 2015
Short description: | p3@SBK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SBK2_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -28bp_to_ENST00000413299_5end |
EntrezGene: | SBK2 |
HGNC: | 34416 |
UniProt: | P0C263 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.22e-09 | 6 |
chondrocyte | 1.22e-09 | 6 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
left cardiac atrium | 2.42e-50 | 1 |
mitral valve | 3.99e-50 | 1 |
cardiac atrium | 5.56e-26 | 2 |
future cardiac atrium | 5.56e-26 | 2 |
atrioventricular valve | 7.14e-26 | 2 |
cartilage tissue | 6.76e-18 | 3 |
skeletal tissue | 6.76e-18 | 3 |
cardiac chamber | 8.00e-18 | 3 |
valve | 9.46e-18 | 3 |
cardiac mesenchyme | 9.46e-18 | 3 |
cardial valve | 9.46e-18 | 3 |
tunica intima | 9.46e-18 | 3 |
heart layer | 9.46e-18 | 3 |
endocardium | 9.46e-18 | 3 |
endocardial cushion | 9.46e-18 | 3 |
presumptive endocardium | 9.46e-18 | 3 |
heart | 2.56e-09 | 24 |
primitive heart tube | 2.56e-09 | 24 |
primary heart field | 2.56e-09 | 24 |
anterior lateral plate mesoderm | 2.56e-09 | 24 |
heart tube | 2.56e-09 | 24 |
heart primordium | 2.56e-09 | 24 |
cardiac mesoderm | 2.56e-09 | 24 |
cardiogenic plate | 2.56e-09 | 24 |
heart rudiment | 2.56e-09 | 24 |
primary circulatory organ | 2.14e-08 | 27 |
blood vessel layer | 2.18e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.46e-50 | 1 |
extraosseous chondrosarcoma | 1.46e-50 | 1 |
myxoid chondrosarcoma | 1.46e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 1.46e-50 | 1 |
connective tissue cancer | 1.22e-09 | 6 |
musculoskeletal system cancer | 1.22e-09 | 6 |