FFCP PHASE1:Hg19::chr2:216262426..216262440,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:216262426..216262440,-
|short_description=p56@FN1
|description=CAGE_peak_56_at_FN1_5end
|association_with_transcript=92bp_to_AK300458_5end
|EntrezGene=233...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt=B4DU16 | |UniProt=B4DU16 | ||
|association_with_transcript=92bp_to_AK300458_5end | |||
|cluster_id=chr2:216262426..216262440,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_56_at_FN1_5end | |||
|id=chr2:216262426..216262440,- | |||
|ontology_enrichment_celltype=CL:0000055!1.41e-25!180;CL:0000057!3.41e-23!75;CL:0002371!1.71e-13!591;CL:0000144!1.71e-11!625;CL:0000680!1.13e-10!57;CL:0000056!1.13e-10!57;CL:0000355!1.13e-10!57;CL:0000723!1.48e-10!436;CL:0000048!1.56e-10!430;CL:0000034!1.78e-10!444;CL:0000183!7.63e-10!59;CL:0000187!2.66e-09!54;CL:0002620!9.46e-09!23;CL:0002334!1.73e-07!12;CL:0000548!2.11e-07!679;CL:0000004!2.11e-07!679;CL:0000255!2.11e-07!679;CL:0000393!4.10e-07!60;CL:0000211!4.10e-07!60;CL:0000012!4.84e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000134;6.62e-15;55!CL:0000723;2.03e-14;61!CL:0000048;4.83e-12;58!CL:0000034;8.05e-11;69!CL:0000057;2.65e-09;73!CL:0002334;4.73e-09;12!CL:0000349;5.08e-09;19!CL:0002620;3.33e-08;23!CL:0002494;5.45e-08;16!CL:0002320;8.27e-08;188!CL:0002570;1.64e-07;8!CL:0002540;1.66e-07;6!CL:0002559;2.52e-07;5!CL:0002548;2.86e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.31e-24,76;CL:0000048,3.43e-17,427;CL:0000723,1.72e-16,433;CL:0000034,1.37e-15,441;CL:0002320,1.71e-13,361;CL:0000134,7.64e-13,354;CL:0000219,1.81e-09,386;CL:0002334,4.33e-09,12;CL:0000349,9.59e-09,19;CL:0002620,3.66e-08,23;CL:0002494,5.99e-08,16;CL:0002540,8.78e-08,6;CL:0002570,1.88e-07,8;CL:0002548,2.31e-07,6;CL:0002559,2.45e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.26e-14!83;UBERON:0002329!5.26e-14!83;UBERON:0003077!5.26e-14!83;UBERON:0003059!5.26e-14!83;UBERON:0007282!5.26e-14!83;UBERON:0009618!5.26e-14!83;UBERON:0007285!5.26e-14!83;UBERON:0004290!3.68e-12!70;UBERON:0000486!1.27e-11!82;UBERON:0005256!5.64e-11!143;UBERON:0003102!4.28e-10!95;UBERON:0002199!1.56e-09!45;UBERON:0002416!1.56e-09!45;UBERON:0001134!1.85e-09!61;UBERON:0002036!1.85e-09!61;UBERON:0003082!1.85e-09!61;UBERON:0002385!3.38e-09!63;UBERON:0001015!3.38e-09!63;UBERON:0000383!3.38e-09!63;UBERON:0002097!2.95e-08!40;UBERON:0004923!1.09e-07!57;UBERON:0004872!4.98e-07!84;UBERON:0000478!5.85e-07!24;UBERON:0002100!7.60e-07!216;UBERON:0005631!8.09e-07!14;UBERON:0000158!8.09e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.45e-09;9!UBERON:0000042;5.45e-09;9!UBERON:0000478;8.00e-09;24!UBERON:0002384;1.63e-08;198!UBERON:0003688;2.23e-08;6!UBERON:0002358;2.23e-08;6!UBERON:0003684;2.23e-08;6!UBERON:0001178;2.23e-08;6!UBERON:0005631;1.24e-07;10!UBERON:0000158;1.24e-07;10!UBERON:0002097;1.60e-07;41!UBERON:0004923;2.01e-07;55!UBERON:0002073;2.52e-07;5!UBERON:0002199;5.38e-07;46!UBERON:0002416;5.38e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.55e-14,371;UBERON:0002199,1.37e-10,46;UBERON:0002416,1.37e-10,46;UBERON:0004923,1.71e-10,66;UBERON:0002097,4.44e-09,41;UBERON:0003688,1.28e-08,6;UBERON:0002358,1.28e-08,6;UBERON:0003684,1.28e-08,6;UBERON:0001178,1.28e-08,6;UBERON:0000478,1.47e-08,24;UBERON:0005631,1.46e-07,14;UBERON:0000158,1.46e-07,14;UBERON:0002073,2.45e-07,5;UBERON:0005086,2.45e-07,5;UBERON:0000926,4.66e-07,315;UBERON:0004120,4.66e-07,315;UBERON:0006603,4.66e-07,315 | |||
|phase1_expression=0.908391896352783,10.2768251467672,2.96004248601539,4.00293193412522,1.78784437770915,0.872338524100369,0,1.89515962028049,0.522371256399677,0.245733936501509,0,1.09220686065086,2.11013582582763,0.74259811776028,0.331397375727916,0.672325146451775,1.20538905604795,2.19093027116212,3.90346239032406,0,0.204000691244253,0.313454721478088,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.9426179682566,2.01210257911091,0.895037932904712,0,1.00267582127178,1.88300474649071,17.4962908351242,23.3584737745265,0.0945348171640679,0.886917589850256,0.966182642624386,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0.550236083880135,1.04497483268405,0.516833518338658,1.06729878806013,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.366403487860815,0,0,0,6.95760732373446,1.77282716330412,5.82600395578163,11.4734648299525,1.41867352879343,2.24271040056923,1.06748995729705,3.45334567784024,1.8672662123986,2.2900814251847,1.9615428373615,4.08665054641315,4.03323147135999,0.234321431833797,1.5608003841516,1.1409436430889,4.18456305545043,0.704606991862589,0,0.421352420106746,0.408308342509787,0.61417158655884,1.54988671763648,1.18800285728205,1.7308685049499,2.73048408581408,0,0.168336113954066,0.750711119231785,0.277064115484183,0.438977620880838,1.83892677479412,0.600952235626387,0.567160915800105,2.33206526395521,0.85422955527427,1.90738711043606,6.30191301777245,1.44273540933814,3.34932702059318,0.930584281657949,3.20675031258406,2.33848812386877,6.05841058185875,1.28869858099219,1.61646056818812,3.55009592516614,0.906768884048762,0.508681776931463,0.57978255948989,0.818238361772504,0,0.121973706129595,0,0.464775771478074,0.207322110030741,0.252320850875628,0,3.12899064659632,3.85944562915731,1.38134921352481,13.4666699129274,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,2.94017422771084,0,1.96565443335525,0,0,0.368965315629341,0,0.878002283269004,0,0.301586917234893,0.185176890317059,0,1.03993478527958,0,0,1.6437217193015,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0,1.17587489739202,0.141775097242386,1.34337784054272,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.336393253036082,1.74384027533312,0.80672114403045,0,3.57656445851882,6.762422020448,0.26593811658487,2.08014873822732,1.80045161983499,1.41849132023278,1.8649552531127,0.857867961948885,2.17048642156577,2.46972101034231,0.977208552881205,0,0.791951872933429,0.602878754119172,0,0.099972991182057,0,0,0,1.67737398844108,1.14861935834114,0,1.44781306667579,2.87666851570537,2.32779252211864,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,1.50051156317903,0.542530047399471,3.53550464602372,12.3116002270042,3.94256037584837,2.6942525448324,1.80567659836631,2.27407504055985,0,0.664225598535437,1.29058417979192,0.434418072340414,1.17480694477644,1.02943027143257,0,0,0,0,3.32870879020994,0.907170879989041,4.21783273291921,6.44540287809862,10.6650835884568,2.94720043288112,3.07024349440022,4.98647155545183,0,3.39261326365842,3.55123450626254,0.98552587216571,0.519254429183621,2.32420756919918,0.362578348774867,3.60911646545913,0.0920809889358963,0.34444334449382,1.63882051206045,0.655622074797121,0,0.15403067420883,0,0,0.422206515571503,0,0.170093705276516,0.863663664408557,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0,0,0,0.824328093181778,0.0915694648183434,0,1.72279661398852,0.650060246036521,1.6068392984416,0.676695028044854,0.770243085573222,1.5350367472613,1.10269257987624,2.14840489736547,4.20548412351263,1.02271952899321,0.801288320820636,1.15699440752685,0.768760269460425,1.40373983744043,0.910420027699949,0.464845549297286,9.4443704049192,0,0.924100740528266,0.532306030317022,0.869932992075073,0.55597265731176,0.143124886741991,0.744316738719335,0.316379424718726,1.71567174531442,0,1.71175595213568,0,0.78494864019923,0.719489830333259,0.54907405947211,0.471249609382746,0,0,0,0,0.974853958525138,0,0.136499911407986,0.707027159768564,4.52032466480971,0,1.99031692572366,0.438450885253763,0,1.9676842561399,0.608731130888112,0,0.563391205064483,0.430234056612155,1.27723753317057,1.78335525740625,0.354761064070598,1.68886108238131,3.95153871551882,0,0.699869440489966,0,0.670302275535787,0,0.188287601553558,0.43050537267123,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,2.14870036263921,0.296964680832639,1.53580351049616,0,0.140669416410513,3.22795244566427,0,0,1.19548792950642,0,0,0,0,8.70910845453061,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0.227884111694002,0,0,0,21.6920788617705,1.64875668123352,66.6293470023293,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0.61214552326098,0.189559738885464,0,0.103688191397247,0,0,0,0,0.2846095460297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| ||
|short_description=p56@FN1 | |||
}} | }} |
Latest revision as of 03:22, 20 September 2015
Short description: | p56@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_56_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 92bp_to_AK300458_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | B4DU16 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.31e-24 | 76 |
multi fate stem cell | 3.43e-17 | 427 |
somatic stem cell | 1.72e-16 | 433 |
stem cell | 1.37e-15 | 441 |
connective tissue cell | 1.71e-13 | 361 |
mesenchymal cell | 7.64e-13 | 354 |
motile cell | 1.81e-09 | 386 |
preadipocyte | 4.33e-09 | 12 |
extraembryonic cell | 9.59e-09 | 19 |
skin fibroblast | 3.66e-08 | 23 |
cardiocyte | 5.99e-08 | 16 |
mesenchymal stem cell of the bone marrow | 8.78e-08 | 6 |
mesenchymal stem cell of adipose | 1.88e-07 | 8 |
cardiac fibroblast | 2.31e-07 | 6 |
hair follicle cell | 2.45e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.55e-14 | 371 |
integument | 1.37e-10 | 46 |
integumental system | 1.37e-10 | 46 |
organ component layer | 1.71e-10 | 66 |
skin of body | 4.44e-09 | 41 |
omentum | 1.28e-08 | 6 |
peritoneum | 1.28e-08 | 6 |
abdominal cavity | 1.28e-08 | 6 |
visceral peritoneum | 1.28e-08 | 6 |
extraembryonic structure | 1.47e-08 | 24 |
extraembryonic membrane | 1.46e-07 | 14 |
membranous layer | 1.46e-07 | 14 |
hair follicle | 2.45e-07 | 5 |
hair follicle placode | 2.45e-07 | 5 |
mesoderm | 4.66e-07 | 315 |
mesoderm-derived structure | 4.66e-07 | 315 |
presumptive mesoderm | 4.66e-07 | 315 |