FFCP PHASE1:Hg19::chr5:131831436..131831450,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3659 | |EntrezGene=3659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=6116 | |HGNC=6116 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-177bp_to_uc003kxb.2_5end | |association_with_transcript=-177bp_to_uc003kxb.2_5end | ||
|cluster_id=chr5:131831436..131831450,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_5_at_IRF1_5end | |description=CAGE_peak_5_at_IRF1_5end | ||
|id=chr5:131831436..131831450,- | |id=chr5:131831436..131831450,- | ||
|ontology_enrichment_celltype=CL:0000860!4.55e-27!45;CL:0002057!6.01e-26!42;CL:0000766!1.90e-20!76;CL:0002194!2.91e-20!63;CL:0000576!2.91e-20!63;CL:0000040!2.91e-20!63;CL:0000559!2.91e-20!63;CL:0002009!1.61e-19!65;CL:0000738!1.12e-18!140;CL:0000839!7.51e-18!70;CL:0000557!1.52e-17!71;CL:0002087!1.69e-17!119;CL:0002031!1.41e-16!124;CL:0002032!2.50e-16!165;CL:0000837!2.50e-16!165;CL:0000988!1.71e-15!182;CL:0000763!1.79e-15!112;CL:0000049!1.79e-15!112;CL:0000037!2.07e-15!172;CL:0000566!2.07e-15!172;CL:0000775!1.53e-07!3 | |ontology_enrichment_celltype=CL:0000860!4.55e-27!45;CL:0002057!6.01e-26!42;CL:0000766!1.90e-20!76;CL:0002194!2.91e-20!63;CL:0000576!2.91e-20!63;CL:0000040!2.91e-20!63;CL:0000559!2.91e-20!63;CL:0002009!1.61e-19!65;CL:0000738!1.12e-18!140;CL:0000839!7.51e-18!70;CL:0000557!1.52e-17!71;CL:0002087!1.69e-17!119;CL:0002031!1.41e-16!124;CL:0002032!2.50e-16!165;CL:0000837!2.50e-16!165;CL:0000988!1.71e-15!182;CL:0000763!1.79e-15!112;CL:0000049!1.79e-15!112;CL:0000037!2.07e-15!172;CL:0000566!2.07e-15!172;CL:0000775!1.53e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.03e-39;33!CL:0002057;2.03e-39;33!CL:0000473;5.21e-35;39!CL:0000234;5.21e-35;39!CL:0000576;1.93e-22;48!CL:0000766;1.60e-13;69!CL:0000763;2.22e-09;100!CL:0000775;3.25e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,7.20e-37,48;CL:0000234,7.20e-37,48;CL:0000860,2.97e-34,42;CL:0002057,2.97e-34,42;CL:0002194,2.07e-29,59;CL:0000576,2.07e-29,59;CL:0000040,2.07e-29,59;CL:0000559,2.07e-29,59;CL:0000766,3.58e-29,72;CL:0002009,1.90e-28,61;CL:0000839,2.73e-26,66;CL:0000557,6.77e-26,67;CL:0000763,2.30e-19,108;CL:0000049,2.30e-19,108;CL:0000738,2.78e-15,136;CL:0002087,5.96e-15,115;CL:0002031,2.62e-14,120;CL:0002032,8.04e-13,161;CL:0000837,8.04e-13,161;CL:0000037,2.92e-12,168;CL:0000988,1.32e-11,177;CL:0000775,3.16e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.82e-26;42!CL:0000049;1.68e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.63e-19!102;UBERON:0003061!2.63e-19!102;UBERON:0002193!4.00e-17!112;UBERON:0002371!3.92e-15!80;UBERON:0001474!8.36e-14!86;UBERON:0004765!3.56e-11!101;UBERON:0001434!3.56e-11!101;UBERON:0002405!1.49e-10!115;UBERON:0000178!1.10e-07!15;UBERON:0000179!1.10e-07!15;UBERON:0000463!1.10e-07!15 | |ontology_enrichment_uberon=UBERON:0002390!2.63e-19!102;UBERON:0003061!2.63e-19!102;UBERON:0002193!4.00e-17!112;UBERON:0002371!3.92e-15!80;UBERON:0001474!8.36e-14!86;UBERON:0004765!3.56e-11!101;UBERON:0001434!3.56e-11!101;UBERON:0002405!1.49e-10!115;UBERON:0000178!1.10e-07!15;UBERON:0000179!1.10e-07!15;UBERON:0000463!1.10e-07!15 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.22e-23,76;UBERON:0001474,4.00e-21,82;UBERON:0004765,3.21e-19,90;UBERON:0002405,1.37e-18,93;UBERON:0002390,1.27e-17,98;UBERON:0003061,1.27e-17,98;UBERON:0001434,2.92e-17,100;UBERON:0002193,5.97e-16,108;UBERON:0002204,4.09e-10,167;UBERON:0003081,3.40e-08,203 | |||
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|short_description=p5@IRF1 | |short_description=p5@IRF1 | ||
}} | }} |
Latest revision as of 05:28, 20 September 2015
Short description: | p5@IRF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_IRF1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -177bp_to_uc003kxb.2_5end |
EntrezGene: | IRF1 |
HGNC: | 6116 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 7.20e-37 | 48 |
phagocyte | 7.20e-37 | 48 |
classical monocyte | 2.97e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.97e-34 | 42 |
monopoietic cell | 2.07e-29 | 59 |
monocyte | 2.07e-29 | 59 |
monoblast | 2.07e-29 | 59 |
promonocyte | 2.07e-29 | 59 |
myeloid leukocyte | 3.58e-29 | 72 |
macrophage dendritic cell progenitor | 1.90e-28 | 61 |
myeloid lineage restricted progenitor cell | 2.73e-26 | 66 |
granulocyte monocyte progenitor cell | 6.77e-26 | 67 |
myeloid cell | 2.30e-19 | 108 |
common myeloid progenitor | 2.30e-19 | 108 |
leukocyte | 2.78e-15 | 136 |
nongranular leukocyte | 5.96e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 2.62e-14 | 120 |
hematopoietic oligopotent progenitor cell | 8.04e-13 | 161 |
hematopoietic multipotent progenitor cell | 8.04e-13 | 161 |
hematopoietic stem cell | 2.92e-12 | 168 |
hematopoietic cell | 1.32e-11 | 177 |
neutrophil | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.22e-23 | 76 |
bone element | 4.00e-21 | 82 |
skeletal element | 3.21e-19 | 90 |
immune system | 1.37e-18 | 93 |
hematopoietic system | 1.27e-17 | 98 |
blood island | 1.27e-17 | 98 |
skeletal system | 2.92e-17 | 100 |
hemolymphoid system | 5.97e-16 | 108 |
musculoskeletal system | 4.09e-10 | 167 |
lateral plate mesoderm | 3.40e-08 | 203 |