FFCP PHASE1:Hg19::chr17:40913222..40913233,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:40913222..40913233,+ to FFCP PHASE1:Hg19::chr17:40913222..40913233,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10266 | |EntrezGene=10266 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9844 | |HGNC=9844 | ||
|TSSclassifier=strong | |||
|UniProt=O60895 | |UniProt=O60895 | ||
|association_with_transcript=10bp_to_ENST00000253796,NM_005854,uc002ibg.2,uc002ibh.2,uc010cyt.2_5end | |||
|cluster_id=chr17:40913222..40913233,+ | |||
|coexpression_cluster_id=C1435 | |||
|description=CAGE_peak_4_at_RAMP2_5end | |||
|id=chr17:40913222..40913233,+ | |||
|ontology_enrichment_celltype=CL:0000115!7.26e-13!35;CL:0002139!2.58e-12!24;CL:0002078!2.91e-10!44;CL:0000071!2.47e-08!18;CL:0002546!2.47e-08!18;CL:0000213!2.55e-07!57;CL:0000215!2.55e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000115;8.18e-16;36!CL:0002139;6.97e-15;24!CL:0000071;2.84e-09;18!CL:0002078;4.30e-08;45!CL:0002138;9.30e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,6.45e-18,36;CL:0002139,1.31e-14,24;CL:0002078,5.26e-13,45;CL:0000071,4.00e-09,18;CL:0002546,4.00e-09,18;CL:0000213,1.04e-08,58;CL:0000215,1.04e-08,58;CL:0005020,1.29e-07,6;CL:0002138,1.29e-07,6;CL:0005022,1.29e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.84e-09;18!UBERON:0004872;1.28e-08;7!CL:0005022;9.30e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.11e-26!115;UBERON:0004111!2.26e-16!241;UBERON:0000025!3.80e-15!194;UBERON:0000477!2.75e-14!286;UBERON:0000119!1.01e-11!312;UBERON:0000483!1.57e-11!309;UBERON:0002346!3.90e-09!90;UBERON:0000468!5.03e-09!659;UBERON:0003914!5.57e-09!118;UBERON:0001986!2.47e-08!18;UBERON:0004638!2.47e-08!18;UBERON:0004852!2.47e-08!18;UBERON:0000073!2.54e-08!94;UBERON:0001016!2.54e-08!94;UBERON:0003075!6.81e-08!86;UBERON:0007284!6.81e-08!86;UBERON:0004872!2.27e-07!84;UBERON:0000467!2.52e-07!625;UBERON:0005743!2.76e-07!86;UBERON:0003103!2.91e-07!69;UBERON:0000480!3.19e-07!626;UBERON:0001049!4.36e-07!57;UBERON:0005068!4.36e-07!57;UBERON:0006241!4.36e-07!57;UBERON:0007135!4.36e-07!57;UBERON:0001017!4.81e-07!82;UBERON:0000055!9.85e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.21e-09;49!UBERON:0004638;2.84e-09;18!UBERON:0001986;2.84e-09;18!UBERON:0004852;2.84e-09;18!UBERON:0002465;4.62e-08;10!UBERON:0000487;4.10e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.17e-19,114;UBERON:0004111,2.38e-10,240;UBERON:0004638,4.00e-09,18;UBERON:0001986,4.00e-09,18;UBERON:0004852,4.00e-09,18;UBERON:0000025,2.10e-08,192;UBERON:0003103,3.98e-08,68;UBERON:0003887,4.29e-08,12;UBERON:0003914,4.33e-08,117;UBERON:0002465,6.54e-08,10;UBERON:0000055,1.70e-07,68;UBERON:0005172,3.88e-07,54;UBERON:0005173,3.88e-07,54;UBERON:0004876,4.56e-07,11;UBERON:0000487,5.34e-07,22;UBERON:0002417,8.56e-07,60;UBERON:0000916,8.56e-07,60 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,4.02264984984559,0,0,0.631719873426831,4.17897005119742,0,0.697801167972428,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0,0,0,0,0,0,0,0.087834785693126,3.01251873644739,0,0,0,0,0,0,0,0,1.19257444420023,0,0.694281003215189,1.69592382577203,0.838998872419812,1.10047216776027,1.04497483268405,1.03366703667732,0.35576626268671,4.35136796594071,5.23678112241891,0,13.1793511076012,0.735326160691737,4.0507097394088,3.30408994651095,4.04152870727106,2.47745257063309,0,0.949265659568129,2.01521918323448,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0.560677600142307,2.1349799145941,0.49333509683432,0,0.942974704487816,0.653847612453835,0.302714855289863,0,0.234321431833797,0,0.570471821544449,0,0,0,0,0,0,0.516628905878827,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0.211931901159562,0,0.309157587715317,0,0.37223371266318,0,0.0974370051611986,0,0,0.161646056818812,0,0.302256294682921,0.169560592310488,0,0,0,0.365921118388786,0.265059536642971,0.232387885739037,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2394200017423,5.60967095213783,1.2347220339942,2.94017422771084,1.26755034821831,0,1.18157981336281,0,1.22988438543114,0,0,0,0,0.0925884451585296,0.325808305310325,0,0,0.231860809950154,0.117408694235822,5.63029146268188,5.09284063834272,6.46864117597634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,1.17217447210047,0,0.102827492703324,0,0.285826432630578,0,0.43596006883328,0.07333828582095,0,7.15312891703765,0.845302752556,0,0,0,0,0,0,0,0,0.977208552881205,0.355391948742546,0,0,0,0.99972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0,0,0.178428988797162,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0.195801157462741,1.02943027143257,0,0,0,0,0,0,0,0,0,0.512556597022804,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0,0,0,0.725156697549733,0,0,0,0,0,1.35359883872224,0.231046011313244,0,0,0,6.8240030442538,1.19065593693561,2.37507507712353,33.9299955918637,0,0,0,0,0.447749509444357,0,0,0.512900250232778,0,0,1.13345112812495,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.214840489736547,0,0.255679882248303,0.356128142586949,0,0,0,0,0.464845549297286,0.62962469366128,0,0.616067160352178,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0.421258456238981,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5745161103971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,0,0.296964680832639,0,0,0.422008249231538,0.111308705022906,0,0,2.98871982376605,0.828851746593443,0.503865495708552,0,0,0,0,0,0,1.479651084554,0,0,0.969332746095218,0.834912883456661,5.98841394003583,0,0,5.07499702804355,0,0,0,0,0,0.868124974666461,0,0.120596438625408,0,0.110579259931225,0.591095237907095,1.09692698576986,0,0,4.15531395920504,0,0,0,0,0.638002319463839,0,2.66517388009317,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0.796118080530053,3.05515072466813,0,0,0,1.07841812769083,2.40773294189637,0.937057782901357,0,0,0,0,2.41981432097328,1.22429104652196,4.80218005176509,0,0,0,0,0,0,1.70765727617876,0,0,0,0,2.62090002363045,0,0,0,0,2.71569246167574,0,3.16373037092745,0,0.19871461170299,0.759729551470544,0,0,1.92107695265417,0,0,0,1.88754497648161,0,0,0,0,0,0.203996435272644,0,0,0.410716136675979,0,0,0.262887354279314,4.18923601908381,5.49985017628041,3.58936512288407,0.998395002494955,1.28767814440971,1.78537165953498,3.56072404179649,0.720599767084807,0,0.236349546921671,0.0824158583811665,0.337017719270924,0,0,0,0.272406812223151,0,0.275078873194468,0.415440338029185,0,0,0.728994679896296,0,1.57611414598396,3.93409411012486,0,0,0,5.71756261098694,3.31045985182716,0,0,0,0,1.19730191562487,0,0.170388021785422,1.47305718976163,1.75862680413699,1.32506888912221,0.258565912723101,0.13223260174269,0,0,5.44615804095243,7.8602152549833,6.21358583020793,4.46549419630756,0,0,0,1.08803560673895,1.0027595760908,2.14441903734423,0.983617892129413,0,0,0.244052529803926,0,1.14681839138014,0.665574309221114,1.61450647647597,0.138348634936231,0,0.454947352624943,0.285465333544967,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0.159296767163702,0,0.155262956876259,0,0,0,2.25386413495828,0,0.406870733204662,0,0.322231671127465,0,0,0,0,0.336749488765919,0,0,0.428883182749851,0,0,0,0,0,0.926404341482917,0,0.353378291891762,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02315497042921,1.07824811396682,0.943595651135378,0.436838552768056,0.678930119816101,0.850299680406731,1.73510069962603,1.11728983594649,0.318004350653419,0,3.20228299314188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| ||
|short_description=p4@RAMP2 | |||
}} | }} |
Latest revision as of 15:58, 24 September 2015
Short description: | p4@RAMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAMP2_5end |
Coexpression cluster: | C1435_Renal_lung_retina_Mesenchymal_placenta_Hepatic_uterus |
Association with transcript: | 10bp_to_ENST00000253796, NM_005854, uc002ibg.2, uc002ibh.2, uc010cyt.2_5end |
EntrezGene: | RAMP2 |
HGNC: | 9844 |
UniProt: | O60895 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 6.45e-18 | 36 |
endothelial cell of vascular tree | 1.31e-14 | 24 |
meso-epithelial cell | 5.26e-13 | 45 |
blood vessel endothelial cell | 4.00e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.00e-09 | 18 |
lining cell | 1.04e-08 | 58 |
barrier cell | 1.04e-08 | 58 |
lymphangioblast | 1.29e-07 | 6 |
endothelial cell of lymphatic vessel | 1.29e-07 | 6 |
vascular lymphangioblast | 1.29e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.17e-19 | 114 |
anatomical conduit | 2.38e-10 | 240 |
blood vessel endothelium | 4.00e-09 | 18 |
endothelium | 4.00e-09 | 18 |
cardiovascular system endothelium | 4.00e-09 | 18 |
tube | 2.10e-08 | 192 |
compound organ | 3.98e-08 | 68 |
intraembryonic coelom | 4.29e-08 | 12 |
epithelial tube | 4.33e-08 | 117 |
lymphoid system | 6.54e-08 | 10 |
vessel | 1.70e-07 | 68 |
abdomen element | 3.88e-07 | 54 |
abdominal segment element | 3.88e-07 | 54 |
urogenital ridge | 4.56e-07 | 11 |
simple squamous epithelium | 5.34e-07 | 22 |
abdominal segment of trunk | 8.56e-07 | 60 |
abdomen | 8.56e-07 | 60 |