FFCP PHASE1:Hg19::chr7:99698338..99698385,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4176 | |EntrezGene=4176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6950 | |HGNC=6950 | ||
|TSSclassifier=strong | |||
|UniProt=A4D2A2,P33993,Q9H4N9 | |UniProt=A4D2A2,P33993,Q9H4N9 | ||
|association_with_transcript=0bp_to_ENST00000354230,ENST00000485286,NM_182776,uc003usv.1_5end | |association_with_transcript=0bp_to_ENST00000354230,ENST00000485286,NM_182776,uc003usv.1_5end | ||
|cluster_id=chr7:99698338..99698385,- | |||
|description=CAGE_peak_3_at_MCM7_5end | |description=CAGE_peak_3_at_MCM7_5end | ||
|id=chr7:99698338..99698385,- | |id=chr7:99698338..99698385,- | ||
|ontology_enrichment_celltype=CL:0000791!1.28e-09!18;CL:0000789!1.28e-09!18;CL:0002420!1.28e-09!18;CL:0002419!1.28e-09!18;CL:0000790!1.28e-09!18;CL:0000838!7.02e-08!52;CL:0000625!1.08e-07!11;CL:0000542!2.89e-07!53;CL:0000051!2.89e-07!53;CL:0000738!4.15e-07!140 | |ontology_enrichment_celltype=CL:0000791!1.28e-09!18;CL:0000789!1.28e-09!18;CL:0002420!1.28e-09!18;CL:0002419!1.28e-09!18;CL:0000790!1.28e-09!18;CL:0000838!7.02e-08!52;CL:0000625!1.08e-07!11;CL:0000542!2.89e-07!53;CL:0000051!2.89e-07!53;CL:0000738!4.15e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0000791;6.31e-11;18!CL:0000789;6.31e-11;18!CL:0002419;6.31e-11;18!CL:0000625;1.77e-08;11 | |ontology_enrichment_celltype_v019=CL:0000791;6.31e-11;18!CL:0000789;6.31e-11;18!CL:0002419;6.31e-11;18!CL:0000625;1.77e-08;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.48e-10,18;CL:0000789,1.48e-10,18;CL:0002420,1.48e-10,18;CL:0002419,1.48e-10,18;CL:0000790,1.48e-10,18;CL:0000625,2.09e-08,11;CL:0000838,2.73e-08,52;CL:0000542,7.56e-08,53;CL:0000051,7.56e-08,53;CL:0000738,1.29e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;6.31e-11;18 | |ontology_enrichment_development_v019=CL:0000790;6.31e-11;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.27e-27!115;UBERON:0001049!1.30e-17!57;UBERON:0005068!1.30e-17!57;UBERON:0006241!1.30e-17!57;UBERON:0007135!1.30e-17!57;UBERON:0000073!8.39e-15!94;UBERON:0001016!8.39e-15!94;UBERON:0001017!1.21e-14!82;UBERON:0002616!2.46e-14!59;UBERON:0005743!4.38e-14!86;UBERON:0003080!1.46e-13!42;UBERON:0000955!1.50e-13!69;UBERON:0006238!1.50e-13!69;UBERON:0002780!4.32e-13!41;UBERON:0001890!4.32e-13!41;UBERON:0006240!4.32e-13!41;UBERON:0002346!4.86e-12!90;UBERON:0003075!3.62e-11!86;UBERON:0007284!3.62e-11!86;UBERON:0002020!1.59e-10!34;UBERON:0003528!1.59e-10!34;UBERON:0001893!1.87e-10!34;UBERON:0002791!4.54e-10!33;UBERON:0001869!2.40e-09!32;UBERON:0002619!4.53e-08!22;UBERON:0003056!9.81e-08!61;UBERON:0000153!2.70e-07!129;UBERON:0007811!2.70e-07!129;UBERON:0001950!2.96e-07!20;UBERON:0000956!9.71e-07!25;UBERON:0000203!9.71e-07!25 | |ontology_enrichment_uberon=UBERON:0007023!3.27e-27!115;UBERON:0001049!1.30e-17!57;UBERON:0005068!1.30e-17!57;UBERON:0006241!1.30e-17!57;UBERON:0007135!1.30e-17!57;UBERON:0000073!8.39e-15!94;UBERON:0001016!8.39e-15!94;UBERON:0001017!1.21e-14!82;UBERON:0002616!2.46e-14!59;UBERON:0005743!4.38e-14!86;UBERON:0003080!1.46e-13!42;UBERON:0000955!1.50e-13!69;UBERON:0006238!1.50e-13!69;UBERON:0002780!4.32e-13!41;UBERON:0001890!4.32e-13!41;UBERON:0006240!4.32e-13!41;UBERON:0002346!4.86e-12!90;UBERON:0003075!3.62e-11!86;UBERON:0007284!3.62e-11!86;UBERON:0002020!1.59e-10!34;UBERON:0003528!1.59e-10!34;UBERON:0001893!1.87e-10!34;UBERON:0002791!4.54e-10!33;UBERON:0001869!2.40e-09!32;UBERON:0002619!4.53e-08!22;UBERON:0003056!9.81e-08!61;UBERON:0000153!2.70e-07!129;UBERON:0007811!2.70e-07!129;UBERON:0001950!2.96e-07!20;UBERON:0000956!9.71e-07!25;UBERON:0000203!9.71e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.92e-10;53!UBERON:0002616;2.92e-10;53!UBERON:0002780;3.81e-10;41!UBERON:0001890;3.81e-10;41!UBERON:0003528;2.77e-09;34!UBERON:0002020;2.77e-09;34!UBERON:0002619;7.38e-09;22!UBERON:0001893;7.71e-09;34!UBERON:0002791;1.06e-08;32!UBERON:0007023;1.67e-08;114!UBERON:0001869;1.70e-08;32!UBERON:0001950;6.41e-08;20!UBERON:0000178;8.83e-07;15!UBERON:0000179;8.83e-07;15!UBERON:0000463;8.83e-07;15!UBERON:0000956;9.77e-07;25!UBERON:0000203;9.77e-07;25 | |ontology_enrichment_uberon_v019=UBERON:0000073;2.92e-10;53!UBERON:0002616;2.92e-10;53!UBERON:0002780;3.81e-10;41!UBERON:0001890;3.81e-10;41!UBERON:0003528;2.77e-09;34!UBERON:0002020;2.77e-09;34!UBERON:0002619;7.38e-09;22!UBERON:0001893;7.71e-09;34!UBERON:0002791;1.06e-08;32!UBERON:0007023;1.67e-08;114!UBERON:0001869;1.70e-08;32!UBERON:0001950;6.41e-08;20!UBERON:0000178;8.83e-07;15!UBERON:0000179;8.83e-07;15!UBERON:0000463;8.83e-07;15!UBERON:0000956;9.77e-07;25!UBERON:0000203;9.77e-07;25 | ||
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| ||
|short_description=p3@MCM7 | |short_description=p3@MCM7 | ||
}} | }} |
Latest revision as of 17:13, 24 September 2015
Short description: | p3@MCM7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MCM7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000354230, ENST00000485286, NM_182776, uc003usv.1_5end |
EntrezGene: | MCM7 |
HGNC: | 6950 |
UniProt: | A4D2A2P33993Q9H4N9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.48e-10 | 18 |
alpha-beta T cell | 1.48e-10 | 18 |
immature T cell | 1.48e-10 | 18 |
mature T cell | 1.48e-10 | 18 |
immature alpha-beta T cell | 1.48e-10 | 18 |
CD8-positive, alpha-beta T cell | 2.09e-08 | 11 |
lymphoid lineage restricted progenitor cell | 2.73e-08 | 52 |
lymphocyte | 7.56e-08 | 53 |
common lymphoid progenitor | 7.56e-08 | 53 |
leukocyte | 1.29e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.55e-29 | 114 |
neural tube | 6.15e-18 | 56 |
neural rod | 6.15e-18 | 56 |
future spinal cord | 6.15e-18 | 56 |
neural keel | 6.15e-18 | 56 |
regional part of nervous system | 4.57e-17 | 53 |
regional part of brain | 4.57e-17 | 53 |
nervous system | 1.13e-14 | 89 |
regional part of forebrain | 4.86e-14 | 41 |
forebrain | 4.86e-14 | 41 |
anterior neural tube | 4.86e-14 | 41 |
future forebrain | 4.86e-14 | 41 |
central nervous system | 5.32e-14 | 81 |
brain | 5.70e-13 | 68 |
future brain | 5.70e-13 | 68 |
neurectoderm | 2.18e-12 | 86 |
neural plate | 1.98e-11 | 82 |
presumptive neural plate | 1.98e-11 | 82 |
brain grey matter | 3.44e-11 | 34 |
gray matter | 3.44e-11 | 34 |
telencephalon | 4.10e-11 | 34 |
regional part of telencephalon | 4.38e-10 | 32 |
cerebral hemisphere | 6.85e-10 | 32 |
regional part of cerebral cortex | 3.42e-09 | 22 |
neocortex | 2.81e-08 | 20 |
pre-chordal neural plate | 1.00e-07 | 61 |
ecto-epithelium | 2.14e-07 | 104 |
cerebral cortex | 5.16e-07 | 25 |
pallium | 5.16e-07 | 25 |