FFCP PHASE1:Hg19::chr22:39410287..39410302,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27350 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17353 | |||
|TSSclassifier=strong | |||
|UniProt=F8WB92 | |||
|association_with_transcript=20bp_to_ENST00000428892_5end | |||
|cluster_id=chr22:39410287..39410302,+ | |||
|coexpression_cluster_id=C254 | |||
|description=CAGE_peak_2_at_APOBEC3C_5end | |||
|id=chr22:39410287..39410302,+ | |||
|ontology_enrichment_celltype=CL:0002371!2.84e-22!591;CL:0000144!7.40e-21!625;CL:0000548!7.68e-19!679;CL:0000004!7.68e-19!679;CL:0000255!7.68e-19!679;CL:0000012!1.92e-18!682;CL:0000003!2.60e-17!722;CL:0000183!1.26e-11!59;CL:0000192!9.76e-11!42;CL:0000514!9.76e-11!42;CL:0000680!9.86e-11!57;CL:0000056!9.86e-11!57;CL:0000355!9.86e-11!57;CL:0000187!1.65e-10!54;CL:0000055!8.04e-10!180;CL:0000723!6.15e-09!436;CL:0000048!1.27e-08!430;CL:0000063!1.56e-08!578;CL:0000034!5.48e-08!444;CL:0000393!1.13e-07!60;CL:0000211!1.13e-07!60;CL:0000359!1.31e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.35e-08;43!CL:0000359;3.11e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,5.08e-11,43;CL:0000514,5.08e-11,43;CL:0000680,5.18e-11,58;CL:0000056,5.18e-11,58;CL:0000355,5.18e-11,58;CL:0000187,8.66e-11,55;CL:0000723,7.05e-10,433;CL:0000048,1.71e-09,427;CL:0000034,6.84e-09,441;CL:0000393,5.96e-08,61;CL:0000211,5.96e-08,61;CL:0000359,1.24e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;5.35e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.83e-10!82;UBERON:0005256!5.06e-09!143;UBERON:0000914!6.48e-09!83;UBERON:0002329!6.48e-09!83;UBERON:0003077!6.48e-09!83;UBERON:0003059!6.48e-09!83;UBERON:0007282!6.48e-09!83;UBERON:0009618!6.48e-09!83;UBERON:0007285!6.48e-09!83;UBERON:0001134!2.27e-08!61;UBERON:0002036!2.27e-08!61;UBERON:0003082!2.27e-08!61;UBERON:0004290!2.73e-08!70;UBERON:0002385!8.52e-08!63;UBERON:0001015!8.52e-08!63;UBERON:0000383!8.52e-08!63;UBERON:0003104!1.73e-07!238;UBERON:0009142!1.73e-07!238 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.79e-10,83;UBERON:0007503,3.16e-09,78;UBERON:0001134,1.20e-08,62;UBERON:0002036,1.20e-08,62;UBERON:0003082,1.20e-08,62;UBERON:0002329,1.47e-08,71;UBERON:0003059,1.47e-08,71;UBERON:0007282,1.47e-08,71;UBERON:0004290,1.47e-08,71;UBERON:0009618,1.47e-08,71;UBERON:0002385,4.62e-08,64;UBERON:0001015,4.62e-08,64;UBERON:0000383,4.62e-08,64;UBERON:0003077,4.89e-08,72;UBERON:0007285,4.89e-08,72;UBERON:0005256,5.50e-08,122;UBERON:0007524,6.94e-08,73;UBERON:0003104,6.30e-07,160;UBERON:0009142,6.30e-07,160;UBERON:0003102,9.76e-07,99 | |||
|phase1_expression=7.63049192936338,9.20632252731228,11.4173067317737,11.0080628188443,6.25745532198203,3.48935409640147,2.53299878168311,13.8978372153903,4.44015567939725,17.9385773646101,10.4670175195864,8.73765488520689,9.23184423799587,14.4806632963255,9.27912652038164,14.7911532219391,21.6970030088632,24.8305430731707,28.7880351286399,14.8976480272913,18.9720642857155,4.07491137921514,5.43848375549008,4.24310717725941,2.63639543149086,46.2301104775105,52.1338743007156,47.9348658200307,14.9478425202584,14.2016877295969,8.82451902901633,15.6301608161418,10.5422071572388,26.2525347218419,30.057273825157,3.69640004467296,4.11040615068786,3.87796785972314,2.60707781711184,4.55722828503289,2.23915474239924,2.59114932815184,1.54545340580512,3.05336301437086,1.51150377475524,1.94067248950253,3.71886459049095,1.23350366406548,2.16794459626573,3.74000110018796,1.7931249457037,2.12834006899727,1.03423704220986,0,1.35426486594342,1.69418105588344,1.36453075028923,2.69668181334102,4.28517449319264,2.88836124368484,1.27867425159808,2.96866170168044,1.99463657621632,2.98357325372886,3.48251086354301,3.97169657283798,1.86846674698672,3.51748131359441,1.5644487552606,3.04064382587163,1.21079900526674,1.84138817993782,1.58231193720442,18.3792099091389,12.7562579979026,10.4829322754188,4.26848798356681,2.10247649978109,5.46466994770072,9.9754460309437,14.1230840811354,23.929004143167,21.1195493353587,13.1073266702912,14.2321480618169,8.53460445133014,12.0118796110804,14.9435634388166,17.1871666924064,13.3567525634951,8.53819453664173,9.39579502993502,7.64546456250458,0,5.04457706683382,7.63813845847723,1.37696839079683,2.75107533924415,1.64481199199607,24.2420418316483,0.32592226663359,0,0,35.8741671170259,5.30290633454707,6.20294904834139,12.9985854607207,27.7958163804715,25.4916321217361,21.8702413122889,20.1735512983669,28.1108993163001,0.889719378972363,0,0,26.6276955339281,5.74830740402882,6.8725489096526,14.6751421371312,8.28270077242652,12.370585623272,7.60361635558699,14.4552114314662,20.2218845623981,19.9889162483753,19.6525119196534,17.243687935342,12.4996180799334,12.0348088102578,6.08262496307756,29.2568239576754,24.8159318090345,6.64885321586358,9.39741796199872,6.51739283826656,8.98048417557107,5.5670016293577,2.91980922181582,17.4889411753526,11.9733874629785,15.0197483535246,24.0346603538303,73.223352946801,32.2582465222454,3.8945687238562,3.65672448328461,3.98873881556595,0.476981248610684,1.14398982156026,0,10.9319324051688,5.16140757063675,9.71993404501264,3.95715559346807,19.7164735018656,1.6507082516404,7.10582886225156,3.10100111003195,3.91342888955381,1.33888245105868,5.23678112241891,4.56163263431108,2.19655851793353,4.77962004449629,2.43042584364528,7.32257771929454,4.93964619777574,4.39184773884957,7.66583187329416,6.6448596169769,2.74802615895611,5.27121669744253,3.87780264148325,40.9928409013982,3.47880366186723,12.0298986081351,23.9660617271926,17.4970338656776,13.4773985235376,5.60677600142307,8.5399196583764,6.166688710429,16.1829738407878,4.58016285036939,6.37501422142489,12.1085942115945,1.15235184896,19.4486788422051,7.49184184392769,9.69802096625564,9.71416423586707,6.57633192405083,3.0755859429945,4.21352420106745,19.19049209796,8.10706494257669,14.8789124893102,13.0680314301026,6.42894016124248,163.829045148845,104.199630563355,6.90178067211671,11.6360223480927,19.671552199377,16.6811495934718,6.74273150757843,6.30999847407706,10.3223286675619,13.4542226766646,8.5422955527427,6.78182083710598,13.8041904198825,14.2212490349046,15.2007918626921,18.9839193458222,10.9704615956823,6.9180273664451,16.4081953258674,9.38908966151453,18.5892965341634,13.1353549231147,16.2210878146501,15.7691350848753,21.4519547011259,32.4567883503093,41.8734709267946,1.82960559194393,1.45782745153634,3.137236457477,4.87206958572241,2.77552935963191,3.28479623168247,18.7739438795779,13.5080597020506,26.2456350569713,25.0758681137269,57.0284790518973,11.8306800039844,15.5097914871854,14.9426838527759,8.93381179132391,13.5085255337292,13.0498840511103,11.3258298854538,14.716609884401,14.6203919639628,19.1920418202409,11.2193419042757,30.4564768385236,17.641045366265,0,1.96565443335525,3.54473944008842,0,4.91953754172454,23.3332222005995,42.3636101677295,37.0925785750145,10.7566000480445,40.3685620891189,10.7516740752407,25.9983696319895,24.5363281442965,11.0133884726323,28.4129040050688,3.75352764178792,1.38895653772983,2.28304982681518,0.790204397959275,0,5.17055712783534,7.02012795417713,5.49935300468294,13.1227367581488,38.4679073575388,56.0011634107427,66.2733068001077,85.7370118616188,72.8427090413901,32.0231104632363,14.7040884802087,3.7319060797339,3.45887888200707,3.28230326908588,6.22279364063257,31.705039321337,9.37739577680376,15.3965201420435,3.80461723002297,10.812350082381,16.5779330925735,27.5842467489587,19.1822430286643,22.9548834619574,12.79789986002,78.6844180874141,14.370146793452,21.8069255599594,24.9617848587279,45.7829126186613,9.92943924162948,29.3064396917709,9.57952557509589,23.332729031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| |||
|short_description=p2@APOBEC3C | |||
}} |
Latest revision as of 17:45, 24 September 2015
Short description: | p2@APOBEC3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_APOBEC3C_5end |
Coexpression cluster: | C254_prostate_rhabdomyosarcoma_seminal_Fibroblast_transitionalcell_Smooth_Iris |
Association with transcript: | 20bp_to_ENST00000428892_5end |
EntrezGene: | APOBEC3C |
HGNC: | 17353 |
UniProt: | F8WB92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 5.08e-11 | 43 |
smooth muscle myoblast | 5.08e-11 | 43 |
muscle precursor cell | 5.18e-11 | 58 |
myoblast | 5.18e-11 | 58 |
multi-potent skeletal muscle stem cell | 5.18e-11 | 58 |
muscle cell | 8.66e-11 | 55 |
somatic stem cell | 7.05e-10 | 433 |
multi fate stem cell | 1.71e-09 | 427 |
stem cell | 6.84e-09 | 441 |
electrically responsive cell | 5.96e-08 | 61 |
electrically active cell | 5.96e-08 | 61 |
vascular associated smooth muscle cell | 1.24e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.79e-10 | 83 |
epithelial vesicle | 3.16e-09 | 78 |
skeletal muscle tissue | 1.20e-08 | 62 |
striated muscle tissue | 1.20e-08 | 62 |
myotome | 1.20e-08 | 62 |
somite | 1.47e-08 | 71 |
presomitic mesoderm | 1.47e-08 | 71 |
presumptive segmental plate | 1.47e-08 | 71 |
dermomyotome | 1.47e-08 | 71 |
trunk paraxial mesoderm | 1.47e-08 | 71 |
muscle tissue | 4.62e-08 | 64 |
musculature | 4.62e-08 | 64 |
musculature of body | 4.62e-08 | 64 |
paraxial mesoderm | 4.89e-08 | 72 |
presumptive paraxial mesoderm | 4.89e-08 | 72 |
trunk mesenchyme | 5.50e-08 | 122 |
dense mesenchyme tissue | 6.94e-08 | 73 |
mesenchyme | 6.30e-07 | 160 |
entire embryonic mesenchyme | 6.30e-07 | 160 |
surface structure | 9.76e-07 | 99 |