FFCP PHASE1:Hg19::chr22:39410287..39410302,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:39410287..39410302,+ to FFCP PHASE1:Hg19::chr22:39410287..39410302,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27350 | |EntrezGene=27350 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17353 | |HGNC=17353 | ||
|TSSclassifier=strong | |||
|UniProt=F8WB92 | |UniProt=F8WB92 | ||
|association_with_transcript=20bp_to_ENST00000428892_5end | |||
|cluster_id=chr22:39410287..39410302,+ | |||
|coexpression_cluster_id=C254 | |||
|description=CAGE_peak_2_at_APOBEC3C_5end | |||
|id=chr22:39410287..39410302,+ | |||
|ontology_enrichment_celltype=CL:0002371!2.84e-22!591;CL:0000144!7.40e-21!625;CL:0000548!7.68e-19!679;CL:0000004!7.68e-19!679;CL:0000255!7.68e-19!679;CL:0000012!1.92e-18!682;CL:0000003!2.60e-17!722;CL:0000183!1.26e-11!59;CL:0000192!9.76e-11!42;CL:0000514!9.76e-11!42;CL:0000680!9.86e-11!57;CL:0000056!9.86e-11!57;CL:0000355!9.86e-11!57;CL:0000187!1.65e-10!54;CL:0000055!8.04e-10!180;CL:0000723!6.15e-09!436;CL:0000048!1.27e-08!430;CL:0000063!1.56e-08!578;CL:0000034!5.48e-08!444;CL:0000393!1.13e-07!60;CL:0000211!1.13e-07!60;CL:0000359!1.31e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.35e-08;43!CL:0000359;3.11e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,5.08e-11,43;CL:0000514,5.08e-11,43;CL:0000680,5.18e-11,58;CL:0000056,5.18e-11,58;CL:0000355,5.18e-11,58;CL:0000187,8.66e-11,55;CL:0000723,7.05e-10,433;CL:0000048,1.71e-09,427;CL:0000034,6.84e-09,441;CL:0000393,5.96e-08,61;CL:0000211,5.96e-08,61;CL:0000359,1.24e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;5.35e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.83e-10!82;UBERON:0005256!5.06e-09!143;UBERON:0000914!6.48e-09!83;UBERON:0002329!6.48e-09!83;UBERON:0003077!6.48e-09!83;UBERON:0003059!6.48e-09!83;UBERON:0007282!6.48e-09!83;UBERON:0009618!6.48e-09!83;UBERON:0007285!6.48e-09!83;UBERON:0001134!2.27e-08!61;UBERON:0002036!2.27e-08!61;UBERON:0003082!2.27e-08!61;UBERON:0004290!2.73e-08!70;UBERON:0002385!8.52e-08!63;UBERON:0001015!8.52e-08!63;UBERON:0000383!8.52e-08!63;UBERON:0003104!1.73e-07!238;UBERON:0009142!1.73e-07!238 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.79e-10,83;UBERON:0007503,3.16e-09,78;UBERON:0001134,1.20e-08,62;UBERON:0002036,1.20e-08,62;UBERON:0003082,1.20e-08,62;UBERON:0002329,1.47e-08,71;UBERON:0003059,1.47e-08,71;UBERON:0007282,1.47e-08,71;UBERON:0004290,1.47e-08,71;UBERON:0009618,1.47e-08,71;UBERON:0002385,4.62e-08,64;UBERON:0001015,4.62e-08,64;UBERON:0000383,4.62e-08,64;UBERON:0003077,4.89e-08,72;UBERON:0007285,4.89e-08,72;UBERON:0005256,5.50e-08,122;UBERON:0007524,6.94e-08,73;UBERON:0003104,6.30e-07,160;UBERON:0009142,6.30e-07,160;UBERON:0003102,9.76e-07,99 | |||
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| ||
|short_description=p2@APOBEC3C | |||
}} | }} |
Latest revision as of 17:45, 24 September 2015
Short description: | p2@APOBEC3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_APOBEC3C_5end |
Coexpression cluster: | C254_prostate_rhabdomyosarcoma_seminal_Fibroblast_transitionalcell_Smooth_Iris |
Association with transcript: | 20bp_to_ENST00000428892_5end |
EntrezGene: | APOBEC3C |
HGNC: | 17353 |
UniProt: | F8WB92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 5.08e-11 | 43 |
smooth muscle myoblast | 5.08e-11 | 43 |
muscle precursor cell | 5.18e-11 | 58 |
myoblast | 5.18e-11 | 58 |
multi-potent skeletal muscle stem cell | 5.18e-11 | 58 |
muscle cell | 8.66e-11 | 55 |
somatic stem cell | 7.05e-10 | 433 |
multi fate stem cell | 1.71e-09 | 427 |
stem cell | 6.84e-09 | 441 |
electrically responsive cell | 5.96e-08 | 61 |
electrically active cell | 5.96e-08 | 61 |
vascular associated smooth muscle cell | 1.24e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.79e-10 | 83 |
epithelial vesicle | 3.16e-09 | 78 |
skeletal muscle tissue | 1.20e-08 | 62 |
striated muscle tissue | 1.20e-08 | 62 |
myotome | 1.20e-08 | 62 |
somite | 1.47e-08 | 71 |
presomitic mesoderm | 1.47e-08 | 71 |
presumptive segmental plate | 1.47e-08 | 71 |
dermomyotome | 1.47e-08 | 71 |
trunk paraxial mesoderm | 1.47e-08 | 71 |
muscle tissue | 4.62e-08 | 64 |
musculature | 4.62e-08 | 64 |
musculature of body | 4.62e-08 | 64 |
paraxial mesoderm | 4.89e-08 | 72 |
presumptive paraxial mesoderm | 4.89e-08 | 72 |
trunk mesenchyme | 5.50e-08 | 122 |
dense mesenchyme tissue | 6.94e-08 | 73 |
mesenchyme | 6.30e-07 | 160 |
entire embryonic mesenchyme | 6.30e-07 | 160 |
surface structure | 9.76e-07 | 99 |