FFCP PHASE1:Hg19::chr14:60194368..60194387,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6252 | |EntrezGene=6252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |HGNC=10467 | ||
|TSSclassifier=strong | |||
|UniProt=Q16799 | |UniProt=Q16799 | ||
|association_with_transcript=43bp_to_ENST00000432103,uc001xem.1_5end | |association_with_transcript=43bp_to_ENST00000432103,uc001xem.1_5end | ||
|cluster_id=chr14:60194368..60194387,- | |||
|coexpression_cluster_id=C89 | |||
|description=CAGE_peak_11_at_RTN1_5end | |description=CAGE_peak_11_at_RTN1_5end | ||
|id=chr14:60194368..60194387,- | |id=chr14:60194368..60194387,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;1.70e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.70e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001893!6.51e-65!34;UBERON:0001869!9.22e-63!32;UBERON:0002791!1.42e-60!33;UBERON:0002020!6.55e-59!34;UBERON:0003528!6.55e-59!34;UBERON:0002619!1.81e-58!22;UBERON:0001049!1.17e-53!57;UBERON:0005068!1.17e-53!57;UBERON:0006241!1.17e-53!57;UBERON:0007135!1.17e-53!57;UBERON:0002780!2.50e-53!41;UBERON:0001890!2.50e-53!41;UBERON:0006240!2.50e-53!41;UBERON:0003080!5.56e-52!42;UBERON:0002616!1.08e-51!59;UBERON:0000956!2.55e-51!25;UBERON:0000203!2.55e-51!25;UBERON:0000955!1.13e-50!69;UBERON:0006238!1.13e-50!69;UBERON:0001017!5.62e-49!82;UBERON:0001950!8.75e-49!20;UBERON:0005743!1.75e-46!86;UBERON:0000073!1.26e-41!94;UBERON:0001016!1.26e-41!94;UBERON:0003075!3.29e-40!86;UBERON:0007284!3.29e-40!86;UBERON:0002346!3.41e-38!90;UBERON:0003056!1.23e-34!61;UBERON:0001871!2.17e-33!7;UBERON:0007023!1.51e-31!115;UBERON:0000033!5.12e-31!123;UBERON:0000153!2.52e-29!129;UBERON:0007811!2.52e-29!129;UBERON:0000349!1.21e-28!5;UBERON:0004121!1.24e-22!169;UBERON:0000200!2.26e-22!6;UBERON:0000924!5.59e-22!173;UBERON:0006601!5.59e-22!173;UBERON:0002771!5.71e-17!3;UBERON:0002420!1.92e-15!9;UBERON:0007245!1.92e-15!9;UBERON:0010009!1.92e-15!9;UBERON:0010011!1.92e-15!9;UBERON:0000454!1.92e-15!9;UBERON:0000025!1.59e-13!194;UBERON:0001876!1.22e-12!2;UBERON:0001954!1.61e-12!2;UBERON:0003022!1.61e-12!2;UBERON:0002421!1.61e-12!2;UBERON:0002600!1.61e-12!2;UBERON:0002360!7.69e-12!2;UBERON:0000094!7.69e-12!2;UBERON:0007645!7.69e-12!2;UBERON:0004111!7.38e-11!241;UBERON:0001872!2.10e-10!5;UBERON:0000064!2.67e-10!219;UBERON:0002308!6.51e-10!9;UBERON:0000125!6.51e-10!9;UBERON:0002680!1.47e-09!9;UBERON:0001895!1.47e-09!9;UBERON:0010092!1.47e-09!9;UBERON:0000477!3.43e-09!286;UBERON:0000483!4.59e-08!309;UBERON:0000988!5.85e-08!3;UBERON:0000119!6.24e-08!312;UBERON:0009663!1.34e-07!7;UBERON:0000475!2.13e-07!365;UBERON:0004733!3.40e-07!12;UBERON:0002028!3.40e-07!12;UBERON:0007277!3.40e-07!12;UBERON:0002022!3.73e-07!1;UBERON:0003112!4.97e-07!1;UBERON:0000032!4.97e-07!1;UBERON:0005253!4.97e-07!1;UBERON:0003128!4.97e-07!1;UBERON:0002241!4.97e-07!1;UBERON:0001703!4.97e-07!1;UBERON:0004761!4.97e-07!1;UBERON:0009617!4.97e-07!1;UBERON:0001882!5.57e-07!1;UBERON:0005403!5.57e-07!1;UBERON:0002902!8.75e-07!1;UBERON:0009899!8.75e-07!1;UBERON:0007190!9.25e-07!1 | |ontology_enrichment_uberon=UBERON:0001893!6.51e-65!34;UBERON:0001869!9.22e-63!32;UBERON:0002791!1.42e-60!33;UBERON:0002020!6.55e-59!34;UBERON:0003528!6.55e-59!34;UBERON:0002619!1.81e-58!22;UBERON:0001049!1.17e-53!57;UBERON:0005068!1.17e-53!57;UBERON:0006241!1.17e-53!57;UBERON:0007135!1.17e-53!57;UBERON:0002780!2.50e-53!41;UBERON:0001890!2.50e-53!41;UBERON:0006240!2.50e-53!41;UBERON:0003080!5.56e-52!42;UBERON:0002616!1.08e-51!59;UBERON:0000956!2.55e-51!25;UBERON:0000203!2.55e-51!25;UBERON:0000955!1.13e-50!69;UBERON:0006238!1.13e-50!69;UBERON:0001017!5.62e-49!82;UBERON:0001950!8.75e-49!20;UBERON:0005743!1.75e-46!86;UBERON:0000073!1.26e-41!94;UBERON:0001016!1.26e-41!94;UBERON:0003075!3.29e-40!86;UBERON:0007284!3.29e-40!86;UBERON:0002346!3.41e-38!90;UBERON:0003056!1.23e-34!61;UBERON:0001871!2.17e-33!7;UBERON:0007023!1.51e-31!115;UBERON:0000033!5.12e-31!123;UBERON:0000153!2.52e-29!129;UBERON:0007811!2.52e-29!129;UBERON:0000349!1.21e-28!5;UBERON:0004121!1.24e-22!169;UBERON:0000200!2.26e-22!6;UBERON:0000924!5.59e-22!173;UBERON:0006601!5.59e-22!173;UBERON:0002771!5.71e-17!3;UBERON:0002420!1.92e-15!9;UBERON:0007245!1.92e-15!9;UBERON:0010009!1.92e-15!9;UBERON:0010011!1.92e-15!9;UBERON:0000454!1.92e-15!9;UBERON:0000025!1.59e-13!194;UBERON:0001876!1.22e-12!2;UBERON:0001954!1.61e-12!2;UBERON:0003022!1.61e-12!2;UBERON:0002421!1.61e-12!2;UBERON:0002600!1.61e-12!2;UBERON:0002360!7.69e-12!2;UBERON:0000094!7.69e-12!2;UBERON:0007645!7.69e-12!2;UBERON:0004111!7.38e-11!241;UBERON:0001872!2.10e-10!5;UBERON:0000064!2.67e-10!219;UBERON:0002308!6.51e-10!9;UBERON:0000125!6.51e-10!9;UBERON:0002680!1.47e-09!9;UBERON:0001895!1.47e-09!9;UBERON:0010092!1.47e-09!9;UBERON:0000477!3.43e-09!286;UBERON:0000483!4.59e-08!309;UBERON:0000988!5.85e-08!3;UBERON:0000119!6.24e-08!312;UBERON:0009663!1.34e-07!7;UBERON:0000475!2.13e-07!365;UBERON:0004733!3.40e-07!12;UBERON:0002028!3.40e-07!12;UBERON:0007277!3.40e-07!12;UBERON:0002022!3.73e-07!1;UBERON:0003112!4.97e-07!1;UBERON:0000032!4.97e-07!1;UBERON:0005253!4.97e-07!1;UBERON:0003128!4.97e-07!1;UBERON:0002241!4.97e-07!1;UBERON:0001703!4.97e-07!1;UBERON:0004761!4.97e-07!1;UBERON:0009617!4.97e-07!1;UBERON:0001882!5.57e-07!1;UBERON:0005403!5.57e-07!1;UBERON:0002902!8.75e-07!1;UBERON:0009899!8.75e-07!1;UBERON:0007190!9.25e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002022;2.73e-29;1!UBERON:0000349;1.36e-23;5!UBERON:0002619;4.24e-20;22!UBERON:0000956;7.51e-18;25!UBERON:0000203;7.51e-18;25!UBERON:0001876;1.33e-15;2!UBERON:0002360;2.21e-15;2!UBERON:0001954;2.21e-15;2!UBERON:0000094;2.21e-15;2!UBERON:0003022;2.21e-15;2!UBERON:0002421;2.21e-15;2!UBERON:0002600;2.21e-15;2!UBERON:0010743;2.21e-15;2!UBERON:0002791;5.21e-13;32!UBERON:0001869;5.21e-13;32!UBERON:0001950;7.73e-13;20!UBERON:0003528;9.81e-12;34!UBERON:0002020;9.81e-12;34!UBERON:0002780;2.75e-11;41!UBERON:0001890;2.75e-11;41!UBERON:0001893;7.76e-11;34!UBERON:0001870;1.04e-10;3!UBERON:0001017;2.10e-07;75!UBERON:0000073;4.04e-07;53!UBERON:0002616;4.04e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002022,2.37e-29,1;UBERON:0000349,1.14e-23,5;UBERON:0002619,4.14e-20,22;UBERON:0000956,7.34e-18,25;UBERON:0000203,7.34e-18,25;UBERON:0001876,1.33e-15,2;UBERON:0001954,1.78e-15,2;UBERON:0003022,1.78e-15,2;UBERON:0002421,1.78e-15,2;UBERON:0002600,1.78e-15,2;UBERON:0002360,2.37e-15,2;UBERON:0000094,2.37e-15,2;UBERON:0010743,2.37e-15,2;UBERON:0002791,3.41e-14,32;UBERON:0001869,3.41e-14,32;UBERON:0003528,2.05e-13,34;UBERON:0002020,2.05e-13,34;UBERON:0001893,2.05e-13,34;UBERON:0001950,8.05e-13,20;UBERON:0001017,1.71e-12,81;UBERON:0001016,2.71e-11,89;UBERON:0002780,2.90e-11,41;UBERON:0001890,2.90e-11,41;UBERON:0003080,2.90e-11,41;UBERON:0006240,2.90e-11,41;UBERON:0001870,1.20e-10,3;UBERON:0000955,1.93e-10,68;UBERON:0006238,1.93e-10,68;UBERON:0007023,3.77e-09,114;UBERON:0000073,7.27e-09,53;UBERON:0002616,7.27e-09,53;UBERON:0001049,2.02e-08,56;UBERON:0005068,2.02e-08,56;UBERON:0006241,2.02e-08,56;UBERON:0007135,2.02e-08,56;UBERON:0003056,8.93e-08,61 | |||
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|short_description=p11@RTN1 | |short_description=p11@RTN1 | ||
}} | }} |
Latest revision as of 20:05, 24 September 2015
Short description: | p11@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_RTN1_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 43bp_to_ENST00000432103, uc001xem.1_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q16799 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
insula | 2.37e-29 | 1 |
limbic system | 1.14e-23 | 5 |
regional part of cerebral cortex | 4.14e-20 | 22 |
cerebral cortex | 7.34e-18 | 25 |
pallium | 7.34e-18 | 25 |
amygdala | 1.33e-15 | 2 |
Ammon's horn | 1.78e-15 | 2 |
lobe parts of cerebral cortex | 1.78e-15 | 2 |
hippocampal formation | 1.78e-15 | 2 |
limbic lobe | 1.78e-15 | 2 |
meninx | 2.37e-15 | 2 |
membrane organ | 2.37e-15 | 2 |
meningeal cluster | 2.37e-15 | 2 |
regional part of telencephalon | 3.41e-14 | 32 |
cerebral hemisphere | 3.41e-14 | 32 |
brain grey matter | 2.05e-13 | 34 |
gray matter | 2.05e-13 | 34 |
telencephalon | 2.05e-13 | 34 |
neocortex | 8.05e-13 | 20 |
central nervous system | 1.71e-12 | 81 |
nervous system | 2.71e-11 | 89 |
regional part of forebrain | 2.90e-11 | 41 |
forebrain | 2.90e-11 | 41 |
anterior neural tube | 2.90e-11 | 41 |
future forebrain | 2.90e-11 | 41 |
frontal cortex | 1.20e-10 | 3 |
brain | 1.93e-10 | 68 |
future brain | 1.93e-10 | 68 |
adult organism | 3.77e-09 | 114 |
regional part of nervous system | 7.27e-09 | 53 |
regional part of brain | 7.27e-09 | 53 |
neural tube | 2.02e-08 | 56 |
neural rod | 2.02e-08 | 56 |
future spinal cord | 2.02e-08 | 56 |
neural keel | 2.02e-08 | 56 |
pre-chordal neural plate | 8.93e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.70e-08 | 4 |