FFCP PHASE1:Hg19::chr19:10541426..10541456,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5141 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8780 | |||
|TSSclassifier=strong | |||
|UniProt=P27815 | |||
|association_with_transcript=-64bp_to_ENST00000293683,NM_001111308,uc002mok.2_5end | |||
|cluster_id=chr19:10541426..10541456,+ | |||
|description=CAGE_peak_4_at_PDE4A_5end | |||
|id=chr19:10541426..10541456,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.93e-25!42;CL:0000557!1.88e-24!71;CL:0000766!2.45e-23!76;CL:0002009!4.76e-23!65;CL:0000839!9.74e-23!70;CL:0002194!6.11e-22!63;CL:0000576!6.11e-22!63;CL:0000040!6.11e-22!63;CL:0000559!6.11e-22!63;CL:0000860!1.85e-21!45;CL:0000763!1.00e-15!112;CL:0000049!1.00e-15!112;CL:0002320!4.95e-12!365;CL:0000134!7.12e-12!358;CL:0000048!3.71e-11!430;CL:0000738!7.54e-11!140;CL:0000723!6.59e-10!436;CL:0000219!5.26e-09!390;CL:0002031!6.81e-09!124;CL:0000034!1.89e-08!444;CL:0002087!2.12e-08!119;CL:0000037!4.48e-07!172;CL:0000566!4.48e-07!172;CL:0002032!4.98e-07!165;CL:0000837!4.98e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.93e-23;33!CL:0002057;9.93e-23;33!CL:0000473;1.94e-21;39!CL:0000234;1.94e-21;39!CL:0000576;2.77e-19;48!CL:0000766;4.20e-18;69!CL:0000763;3.88e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.05e-34,48;CL:0000234,1.05e-34,48;CL:0000557,2.92e-34,67;CL:0000766,1.81e-33,72;CL:0002009,7.40e-33,61;CL:0000860,3.01e-32,42;CL:0002057,3.01e-32,42;CL:0000839,7.35e-32,66;CL:0002194,2.34e-31,59;CL:0000576,2.34e-31,59;CL:0000040,2.34e-31,59;CL:0000559,2.34e-31,59;CL:0000763,2.64e-25,108;CL:0000049,2.64e-25,108;CL:0000738,2.31e-17,136;CL:0002031,1.41e-14,120;CL:0002087,4.50e-14,115;CL:0000037,8.37e-14,168;CL:0002032,1.17e-13,161;CL:0000837,1.17e-13,161;CL:0000988,2.03e-13,177;CL:0002320,7.37e-13,361;CL:0000134,1.80e-12,354;CL:0000048,1.98e-10,427;CL:0000219,2.83e-10,386;CL:0000723,1.28e-09,433;CL:0000034,1.32e-08,441;CL:0002393,3.55e-08,9;CL:0002397,3.55e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;9.00e-23;42!CL:0000049;1.30e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.97e-21!80;UBERON:0002405!3.62e-19!115;UBERON:0002390!7.49e-19!102;UBERON:0003061!7.49e-19!102;UBERON:0002193!1.94e-18!112;UBERON:0001474!6.08e-18!86;UBERON:0003081!4.78e-17!216;UBERON:0004765!1.85e-15!101;UBERON:0001434!1.85e-15!101;UBERON:0002204!1.51e-14!167;UBERON:0002384!2.17e-12!375;UBERON:0000926!1.19e-08!448;UBERON:0004120!1.19e-08!448;UBERON:0006603!1.19e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.31e-28,76;UBERON:0002390,3.03e-25,98;UBERON:0003061,3.03e-25,98;UBERON:0001474,6.26e-25,82;UBERON:0002405,3.63e-24,93;UBERON:0002193,2.97e-23,108;UBERON:0004765,1.04e-21,90;UBERON:0001434,3.08e-21,100;UBERON:0003081,5.57e-21,203;UBERON:0002204,3.75e-16,167;UBERON:0002384,1.82e-13,371;UBERON:0000926,1.35e-12,315;UBERON:0004120,1.35e-12,315;UBERON:0006603,1.35e-12,315 | |||
|phase1_expression=1.09007027562334,2.35510576280081,1.83240725324762,4.00293193412522,0.446961094427288,1.74467704820074,2.53299878168311,0,1.04474251279935,1.22866968250754,0.697801167972428,0.436882744260345,0.527533956456907,0,0,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0.136874425072884,0.251085279189606,1.06978768047132,1.47781061009902,1.25937250101887,7.86728553697808,1.15148819429164,7.43117391917165,0.919421224478927,0,0,0,0,0,3.87796785972314,6.81851121398482,6.72733699219141,2.91090116511902,2.91504299417082,2.83333124397605,7.70610665531693,8.69114670484262,8.24785808038575,14.1781712512468,9.45686142450199,10.5300166104335,4.89077066947656,4.86705342405291,0.709446689665756,7.23965929546899,7.10033151942209,5.41705946377367,13.5534484470675,12.8265890527188,8.31476892446813,23.2623758201886,12.8371610830437,8.95071976118658,1.9791078011203,2.39356389145958,3.40979800426155,16.8321358404579,15.3194010666608,14.9477339758938,2.26123798731069,5.21482918420201,1.95469960234605,9.6863920421339,6.99727508376373,4.74693581161327,2.74631872205524,4.46469029926591,2.93522103711726,3.93150209012733,3.45406853535464,2.57160938715328,4.84521664360123,3.9783335439818,3.65328307529268,0,0.546138611262131,0,0.426730222566507,0.800791974072025,0,0,0,0,0.587237189370939,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0.445641827540694,1.47302953737419,0.443067789167242,0.812411591295047,0.768547918354051,0.780356085359269,1.97325485524411,2.21080014228679,0,0,0,0,0.906474741580529,0,0,0,0.318565414324097,0,0.950452044448374,0.602300476311091,0.511946444617674,0,0,0.821127996921047,0.80642697289893,0.534880391567015,1.30341963494519,0,0.670700859703636,1.79007586580942,1.80719576192283,2.00535164254356,0.869079113764942,1.5905718941022,1.94653948121054,0,0.221729397462564,0.263504357079378,0.72038491523742,0,0,0.649094787309367,1.0447784237956,0.797747763113191,0,0.571994910780128,0.371457501329565,1.59009925893364,3.4409383804245,2.42998351125316,1.13061588384802,2.09749718104953,1.10047216776027,3.13492449805216,0.258416759169329,0,0,2.41697590265488,2.28081631715554,1.46437234528902,0.367663080345869,1.62028389576352,0.803697554556718,1.12264686313085,2.36484109014977,0,0,1.28241220751285,0,0,0,3.47880366186723,1.51956613997496,0.926864265692532,1.14734648299525,2.12801029319014,0.560677600142307,2.1349799145941,0.98667019366864,1.24484414159907,1.48181739276657,1.47115712802113,0.908144565869588,1.72852777344,1.40592859100278,0.312160076830321,2.2818872861778,0.597794722207204,0.352303495931295,0.323745888736263,0.561803226808994,1.63323337003915,0.61417158655884,1.96318984233954,1.18800285728205,2.47266929278557,2.73048408581408,2.15585442544872,1.17835279767846,0.875829639103749,1.38532057742091,1.31693286264251,0.612975591598039,1.35214253015937,0.567160915800105,1.07633781413317,0.640672166455702,0.635795703478686,0.600182192168805,1.23663035086127,0.772921620136887,1.30281799432113,1.35021065793013,0.876933046450788,0.757301322732344,1.01254888506529,0.80823028409406,0,1.20902517873168,0.67824236924195,0.386521706326594,0.818238361772504,0,0,0,0,0.207322110030741,0,0,0,0,1.38134921352481,0,0.721879481669586,0.236613600079688,0.505754070234305,0.241011029883482,0.330881918197182,0.435758888184812,0,0.269662616320329,0.392442930250692,0.38474715694639,0.738155454624648,4.20725321410337,1.6462960453256,1.47008711385542,0,0.982827216677626,1.77236972004421,0,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,1.95484983186195,3.11980435583874,0,0,1.05667824812239,0.721832238805369,0.925971025153221,0.951270761172991,0,0,1.96973604869918,1.17002132569619,2.0808362720422,0,0.335964256397719,0.567100388969546,0,0,0,0.985326475791887,3.16974362447614,12.0250307013648,6.3412779503463,13.2554555097699,0.571481048629521,3.81988425558278,3.51652341630141,1.71072446022705,1.02827492703324,0.600686115687835,1.14330573052231,1.56983518083505,0.87192013766656,0.4400297149257,0.387815147273333,0,0.845302752556,0.797814349754612,1.04007436911366,0.771622122786426,0,0.799266537048298,0.57191197463259,1.08524321078289,2.46972101034231,0.325736184293735,1.77695974371273,0,1.20575750823834,1.74306691720059,1.29964888536674,1.2162378064119,4.01805673145701,4.21667878966063,0.479249710983165,3.44585807502342,1.42636905040718,0.434343920002738,0.205476322550383,0.179060963239896,2.35378802386407,2.75843064282698,3.66566877261179,4.36366323351144,0,0,0,0,0,1.49801404789436,0,1.65766205374414,1.2269149171914,1.00034104211935,0.542530047399471,1.45579603071565,1.24900292158013,1.10391690523754,2.45996971484698,0.300946099727719,0,4.1389228517002,0,0.553107505625109,0.868836144680828,1.95801157462741,2.74514739048685,1.86091223510599,3.8828556147351,3.62873696531711,0,0,0.30239029332968,1.24053903909388,1.07423381301644,2.24528075546459,0.768834895534206,1.02341449813341,1.76939313257968,1.48418066444991,0.616838775210622,0.887808626565635,0.739144404124282,1.03850885836724,0.92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| |||
|short_description=p4@PDE4A | |||
}} |
Latest revision as of 01:36, 25 September 2015
Short description: | p4@PDE4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PDE4A_5end |
Coexpression cluster: | NA |
Association with transcript: | -64bp_to_ENST00000293683, NM_001111308, uc002mok.2_5end |
EntrezGene: | PDE4A |
HGNC: | 8780 |
UniProt: | P27815 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.05e-34 | 48 |
phagocyte | 1.05e-34 | 48 |
granulocyte monocyte progenitor cell | 2.92e-34 | 67 |
myeloid leukocyte | 1.81e-33 | 72 |
macrophage dendritic cell progenitor | 7.40e-33 | 61 |
classical monocyte | 3.01e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.01e-32 | 42 |
myeloid lineage restricted progenitor cell | 7.35e-32 | 66 |
monopoietic cell | 2.34e-31 | 59 |
monocyte | 2.34e-31 | 59 |
monoblast | 2.34e-31 | 59 |
promonocyte | 2.34e-31 | 59 |
myeloid cell | 2.64e-25 | 108 |
common myeloid progenitor | 2.64e-25 | 108 |
leukocyte | 2.31e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 1.41e-14 | 120 |
nongranular leukocyte | 4.50e-14 | 115 |
hematopoietic stem cell | 8.37e-14 | 168 |
hematopoietic oligopotent progenitor cell | 1.17e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-13 | 161 |
hematopoietic cell | 2.03e-13 | 177 |
connective tissue cell | 7.37e-13 | 361 |
mesenchymal cell | 1.80e-12 | 354 |
multi fate stem cell | 1.98e-10 | 427 |
motile cell | 2.83e-10 | 386 |
somatic stem cell | 1.28e-09 | 433 |
stem cell | 1.32e-08 | 441 |
intermediate monocyte | 3.55e-08 | 9 |
CD14-positive, CD16-positive monocyte | 3.55e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.31e-28 | 76 |
hematopoietic system | 3.03e-25 | 98 |
blood island | 3.03e-25 | 98 |
bone element | 6.26e-25 | 82 |
immune system | 3.63e-24 | 93 |
hemolymphoid system | 2.97e-23 | 108 |
skeletal element | 1.04e-21 | 90 |
skeletal system | 3.08e-21 | 100 |
lateral plate mesoderm | 5.57e-21 | 203 |
musculoskeletal system | 3.75e-16 | 167 |
connective tissue | 1.82e-13 | 371 |
mesoderm | 1.35e-12 | 315 |
mesoderm-derived structure | 1.35e-12 | 315 |
presumptive mesoderm | 1.35e-12 | 315 |