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* [http://www.biolayout.org/fantom5/ | * [http://www.biolayout.org/fantom5/ BioLayout] | ||
=== Note === | === Note === | ||
Revision as of 18:41, 29 February 2012
Genes, TSS regions, motifs, samples, etc profiled in FANTOM5 are accessible from here.
Other browsers:
Note
- we are focusing on phase1 freeze, and we are still keep updating this.
- expression view on genes are little bit slow now. We are now investigating alternative ways.
The data sources
- CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM.
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/mm9/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- Swissregulon motifs, and Motif Activity Response Analysis (MARA)
- FF Ontology
