FFCP PHASE1:Hg19::chr14:68189243..68189252,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=145226 | |EntrezGene=145226 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19977 | |HGNC=19977 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=53bp_to_ENST00000539142_5end | |association_with_transcript=53bp_to_ENST00000539142_5end | ||
|cluster_id=chr14:68189243..68189252,+ | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_2_at_RDH12_5end | |description=CAGE_peak_2_at_RDH12_5end | ||
|id=chr14:68189243..68189252,+ | |id=chr14:68189243..68189252,+ | ||
|ontology_enrichment_celltype=CL:0002553!7.77e-07!1 | |ontology_enrichment_celltype=CL:0002553!7.77e-07!1 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006242;8.34e-34;1!UBERON:0003056;1.85e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.20e-17!115;UBERON:0001905!3.53e-12!2;UBERON:0002757!3.53e-12!2;UBERON:0010134!3.53e-12!2;UBERON:0002784!3.53e-12!2;UBERON:0005408!3.53e-12!2;UBERON:0001899!3.53e-12!2;UBERON:0002780!1.59e-10!41;UBERON:0001890!1.59e-10!41;UBERON:0006240!1.59e-10!41;UBERON:0001049!2.36e-10!57;UBERON:0005068!2.36e-10!57;UBERON:0006241!2.36e-10!57;UBERON:0007135!2.36e-10!57;UBERON:0003080!3.07e-10!42;UBERON:0002616!6.25e-10!59;UBERON:0003056!1.09e-09!61;UBERON:0000955!1.52e-09!69;UBERON:0006238!1.52e-09!69;UBERON:0000153!8.62e-09!129;UBERON:0007811!8.62e-09!129;UBERON:0000073!8.97e-09!94;UBERON:0001016!8.97e-09!94;UBERON:0003075!1.09e-08!86;UBERON:0007284!1.09e-08!86;UBERON:0005743!1.47e-08!86;UBERON:0002346!3.49e-08!90;UBERON:0001017!1.14e-07!82;UBERON:0001894!1.17e-07!7;UBERON:0006222!1.17e-07!7;UBERON:0004121!1.20e-07!169;UBERON:0000924!2.22e-07!173;UBERON:0006601!2.22e-07!173;UBERON:0000033!3.73e-07!123;UBERON:0002702!6.96e-07!1;UBERON:0007029!9.15e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.84e-66;2!UBERON:0002757;2.84e-66;2!UBERON:0010134;2.84e-66;2!UBERON:0005408;2.84e-66;2!UBERON:0001899;2.84e-66;2!UBERON:0003296;8.36e-34;4!UBERON:0010133;8.36e-34;4!UBERON:0002784;8.36e-34;4!UBERON:0001894;7.84e-20;7!UBERON:0002702;1.17e-17;2!UBERON:0001870;3.06e-12;3!UBERON:0002110;3.06e-12;3!UBERON:0000966;5.35e-08;5!UBERON:0005388;5.35e-08;5!UBERON:0001802;5.35e-08;5!UBERON:0000970;1.17e-07;20!UBERON:0002104;2.44e-07;21!UBERON:0000020;8.87e-07;23!UBERON:0000200;9.23e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.84e-66,2;UBERON:0002757,2.84e-66,2;UBERON:0010134,2.84e-66,2;UBERON:0005408,2.84e-66,2;UBERON:0001899,2.84e-66,2;UBERON:0003296,8.36e-34,4;UBERON:0010133,8.36e-34,4;UBERON:0002784,8.36e-34,4;UBERON:0001894,7.84e-20,7;UBERON:0006222,7.84e-20,7;UBERON:0002702,1.07e-17,2;UBERON:0001870,2.89e-12,3;UBERON:0002110,3.24e-12,3;UBERON:0006242,3.24e-12,3;UBERON:0003056,4.24e-09,61;UBERON:0002780,8.32e-08,41;UBERON:0001890,8.32e-08,41;UBERON:0003080,8.32e-08,41;UBERON:0006240,8.32e-08,41;UBERON:0007023,1.14e-07,114;UBERON:0000970,2.44e-07,21;UBERON:0002104,2.44e-07,21;UBERON:0003075,6.43e-07,82;UBERON:0007284,6.43e-07,82;UBERON:0000966,7.17e-07,6;UBERON:0005388,7.17e-07,6;UBERON:0001802,7.17e-07,6;UBERON:0000200,8.97e-07,6 | |||
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|short_description=p2@RDH12 | |short_description=p2@RDH12 | ||
}} | }} |
Latest revision as of 05:24, 25 September 2015
Short description: | p2@RDH12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RDH12_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 53bp_to_ENST00000539142_5end |
EntrezGene: | RDH12 |
HGNC: | 19977 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 2.84e-66 | 2 |
regional part of epithalamus | 2.84e-66 | 2 |
secretory circumventricular organ | 2.84e-66 | 2 |
circumventricular organ | 2.84e-66 | 2 |
epithalamus | 2.84e-66 | 2 |
gland of diencephalon | 8.36e-34 | 4 |
neuroendocrine gland | 8.36e-34 | 4 |
regional part of diencephalon | 8.36e-34 | 4 |
diencephalon | 7.84e-20 | 7 |
future diencephalon | 7.84e-20 | 7 |
middle frontal gyrus | 1.07e-17 | 2 |
frontal cortex | 2.89e-12 | 3 |
gallbladder | 3.24e-12 | 3 |
gall bladder primordium | 3.24e-12 | 3 |
pre-chordal neural plate | 4.24e-09 | 61 |
regional part of forebrain | 8.32e-08 | 41 |
forebrain | 8.32e-08 | 41 |
anterior neural tube | 8.32e-08 | 41 |
future forebrain | 8.32e-08 | 41 |
adult organism | 1.14e-07 | 114 |
eye | 2.44e-07 | 21 |
visual system | 2.44e-07 | 21 |
neural plate | 6.43e-07 | 82 |
presumptive neural plate | 6.43e-07 | 82 |
retina | 7.17e-07 | 6 |
photoreceptor array | 7.17e-07 | 6 |
posterior segment of eyeball | 7.17e-07 | 6 |
gyrus | 8.97e-07 | 6 |