FFCP PHASE1:Hg19::chr14:68189243..68189252,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=145226 | |EntrezGene=145226 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19977 | |HGNC=19977 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=53bp_to_ENST00000539142_5end | |association_with_transcript=53bp_to_ENST00000539142_5end | ||
|cluster_id=chr14:68189243..68189252,+ | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_2_at_RDH12_5end | |description=CAGE_peak_2_at_RDH12_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002553!7.77e-07!1 | |ontology_enrichment_celltype=CL:0002553!7.77e-07!1 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006242;8.34e-34;1!UBERON:0003056;1.85e-12;3 | |ontology_enrichment_development_v019=UBERON:0006242;8.34e-34;1!UBERON:0003056;1.85e-12;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p2@RDH12 | |short_description=p2@RDH12 | ||
}} | }} |
Latest revision as of 05:24, 25 September 2015
Short description: | p2@RDH12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RDH12_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 53bp_to_ENST00000539142_5end |
EntrezGene: | RDH12 |
HGNC: | 19977 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 2.84e-66 | 2 |
regional part of epithalamus | 2.84e-66 | 2 |
secretory circumventricular organ | 2.84e-66 | 2 |
circumventricular organ | 2.84e-66 | 2 |
epithalamus | 2.84e-66 | 2 |
gland of diencephalon | 8.36e-34 | 4 |
neuroendocrine gland | 8.36e-34 | 4 |
regional part of diencephalon | 8.36e-34 | 4 |
diencephalon | 7.84e-20 | 7 |
future diencephalon | 7.84e-20 | 7 |
middle frontal gyrus | 1.07e-17 | 2 |
frontal cortex | 2.89e-12 | 3 |
gallbladder | 3.24e-12 | 3 |
gall bladder primordium | 3.24e-12 | 3 |
pre-chordal neural plate | 4.24e-09 | 61 |
regional part of forebrain | 8.32e-08 | 41 |
forebrain | 8.32e-08 | 41 |
anterior neural tube | 8.32e-08 | 41 |
future forebrain | 8.32e-08 | 41 |
adult organism | 1.14e-07 | 114 |
eye | 2.44e-07 | 21 |
visual system | 2.44e-07 | 21 |
neural plate | 6.43e-07 | 82 |
presumptive neural plate | 6.43e-07 | 82 |
retina | 7.17e-07 | 6 |
photoreceptor array | 7.17e-07 | 6 |
posterior segment of eyeball | 7.17e-07 | 6 |
gyrus | 8.97e-07 | 6 |