FFCP PHASE1:Hg19::chr5:141337703..141337712,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51294 | |EntrezGene=51294 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8657 | |HGNC=8657 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NPG4 | |UniProt=Q9NPG4 | ||
|association_with_transcript=1bp_to_AK027282_5end | |association_with_transcript=1bp_to_AK027282_5end | ||
|cluster_id=chr5:141337703..141337712,- | |||
|coexpression_cluster_id=C4469 | |||
|description=CAGE_peak_4_at_PCDH12_5end | |description=CAGE_peak_4_at_PCDH12_5end | ||
|id=chr5:141337703..141337712,- | |id=chr5:141337703..141337712,- | ||
|ontology_enrichment_celltype=CL:0002139!8.08e-47!24;CL:0000115!1.13e-39!35;CL:0000071!8.23e-34!18;CL:0002546!8.23e-34!18;CL:0002078!5.60e-30!44;CL:0000213!2.00e-21!57;CL:0000215!2.00e-21!57;CL:1000413!7.72e-18!9;CL:0005020!1.54e-14!6;CL:0002138!1.54e-14!6;CL:0005022!1.54e-14!6;CL:0002544!2.75e-11!6;CL:0002543!2.17e-10!6;CL:0002144!3.99e-09!3;CL:0002618!7.30e-08!3;CL:0000222!1.79e-07!119;CL:0000076!9.35e-07!62 | |ontology_enrichment_celltype=CL:0002139!8.08e-47!24;CL:0000115!1.13e-39!35;CL:0000071!8.23e-34!18;CL:0002546!8.23e-34!18;CL:0002078!5.60e-30!44;CL:0000213!2.00e-21!57;CL:0000215!2.00e-21!57;CL:1000413!7.72e-18!9;CL:0005020!1.54e-14!6;CL:0002138!1.54e-14!6;CL:0005022!1.54e-14!6;CL:0002544!2.75e-11!6;CL:0002543!2.17e-10!6;CL:0002144!3.99e-09!3;CL:0002618!7.30e-08!3;CL:0000222!1.79e-07!119;CL:0000076!9.35e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000071;1.44e-49;18!CL:0002139;9.04e-47;24!CL:0002144;1.07e-43;3!CL:1000413;5.47e-39;9!CL:0002544;8.41e-38;6!CL:0000115;1.04e-32;36!CL:0002545;2.06e-29;2!CL:0002078;7.74e-18;45!CL:0000213;1.27e-17;58!CL:0000215;1.27e-17;58!CL:0002262;1.67e-08;2!CL:1000398;1.67e-08;2!CL:0000076;2.93e-08;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,1.23e-49,18;CL:0002546,1.23e-49,18;CL:0002139,9.30e-47,24;CL:0002144,1.43e-43,3;CL:1000413,3.83e-39,9;CL:0000115,2.83e-38,36;CL:0002544,5.48e-38,6;CL:0002078,1.87e-30,45;CL:0002545,2.22e-29,2;CL:0000213,1.98e-23,58;CL:0000215,1.98e-23,58;CL:0000076,9.13e-14,63;CL:0000222,1.05e-10,121;CL:0002262,1.61e-08,2;CL:1000398,1.61e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002546;1.44e-49;18!UBERON:0008801;2.38e-15;1!CL:0000222;5.29e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!8.23e-34!18;UBERON:0004638!8.23e-34!18;UBERON:0004852!8.23e-34!18;UBERON:0000487!8.42e-27!22;UBERON:0006914!5.05e-23!25;UBERON:0000055!5.75e-18!69;UBERON:0003915!7.72e-18!9;UBERON:0004700!7.72e-18!9;UBERON:0001917!7.72e-18!9;UBERON:0004872!5.07e-16!84;UBERON:0007023!5.57e-16!115;UBERON:0002049!9.31e-15!79;UBERON:0007798!9.31e-15!79;UBERON:0001009!5.12e-14!113;UBERON:0004535!1.78e-13!110;UBERON:0001981!6.02e-12!60;UBERON:0007500!6.02e-12!60;UBERON:0004537!6.02e-12!60;UBERON:0006965!6.02e-12!60;UBERON:0002465!5.33e-11!10;UBERON:0000477!8.32e-11!286;UBERON:0001473!1.07e-10!8;UBERON:0004536!1.07e-10!8;UBERON:0006558!1.07e-10!8;UBERON:0004111!1.24e-10!241;UBERON:0001638!2.48e-09!9;UBERON:0003920!2.48e-09!9;UBERON:0004582!2.48e-09!9;UBERON:0001915!3.99e-09!3;UBERON:0001982!3.99e-09!3;UBERON:0003914!4.60e-09!118;UBERON:0000025!8.99e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.44e-49;18!UBERON:0001986;1.44e-49;18!UBERON:0004852;1.44e-49;18!UBERON:0010523;1.07e-43;3!UBERON:0001915;1.07e-43;3!UBERON:0001982;1.07e-43;3!UBERON:0000487;1.78e-40;22!UBERON:0003915;5.47e-39;9!UBERON:0004700;5.47e-39;9!UBERON:0001917;5.47e-39;9!UBERON:0006914;1.47e-35;25!UBERON:0005800;2.06e-29;2!UBERON:0001515;2.06e-29;2!UBERON:0000490;7.44e-25;33!UBERON:0007500;6.86e-17;56!UBERON:0001981;6.86e-17;56!UBERON:0004537;6.86e-17;56!UBERON:0002426;6.93e-16;1!UBERON:0003831;6.93e-16;1!UBERON:0003898;6.93e-16;1!UBERON:0004830;6.93e-16;1!UBERON:0003830;6.93e-16;1!UBERON:0005175;6.93e-16;1!UBERON:0001774;6.93e-16;1!UBERON:0001103;6.93e-16;1!UBERON:0001831;2.38e-15;1!UBERON:0001567;2.38e-15;1!UBERON:0000055;3.23e-11;65!UBERON:0000947;4.56e-11;21!UBERON:0010191;4.56e-11;21!UBERON:0003914;7.99e-11;74!UBERON:0001637;4.39e-09;42!UBERON:0003509;4.39e-09;42!UBERON:0004572;4.39e-09;42!UBERON:0005090;1.34e-08;2!UBERON:0001630;1.34e-08;2!UBERON:0001281;1.67e-08;2!UBERON:0003497;1.67e-08;2!UBERON:0003909;1.67e-08;2!UBERON:0003835;1.67e-08;2!UBERON:0000025;1.93e-08;93!UBERON:0001829;2.48e-08;2!UBERON:0004089;2.48e-08;2!UBERON:0002049;1.46e-07;75!UBERON:0007798;1.46e-07;75!UBERON:0004573;3.28e-07;33!UBERON:0004571;3.28e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.23e-49,18;UBERON:0001986,1.23e-49,18;UBERON:0004852,1.23e-49,18;UBERON:0010523,1.43e-43,3;UBERON:0001915,1.43e-43,3;UBERON:0001982,1.43e-43,3;UBERON:0000487,1.57e-40,22;UBERON:0003915,3.83e-39,9;UBERON:0004700,3.83e-39,9;UBERON:0001917,3.83e-39,9;UBERON:0006914,1.31e-35,25;UBERON:0005800,2.22e-29,2;UBERON:0001515,2.22e-29,2;UBERON:0000055,7.57e-20,68;UBERON:0007500,1.13e-18,59;UBERON:0001981,1.13e-18,59;UBERON:0004537,1.13e-18,59;UBERON:0006965,1.13e-18,59;UBERON:0002049,3.52e-17,78;UBERON:0007798,3.52e-17,78;UBERON:0004872,4.09e-16,83;UBERON:0002426,7.46e-16,1;UBERON:0003831,7.46e-16,1;UBERON:0003898,7.46e-16,1;UBERON:0004830,7.46e-16,1;UBERON:0003830,7.46e-16,1;UBERON:0005175,7.46e-16,1;UBERON:0001774,7.46e-16,1;UBERON:0001103,7.46e-16,1;UBERON:0010084,7.46e-16,1;UBERON:0001831,3.17e-15,1;UBERON:0001567,3.17e-15,1;UBERON:0008801,3.17e-15,1;UBERON:0004535,5.28e-12,109;UBERON:0001009,1.18e-11,112;UBERON:0000947,4.05e-11,21;UBERON:0010191,4.05e-11,21;UBERON:0003914,5.62e-09,117;UBERON:0000490,1.35e-08,148;UBERON:0005090,1.39e-08,2;UBERON:0001630,1.39e-08,2;UBERON:0001281,1.61e-08,2;UBERON:0003497,1.61e-08,2;UBERON:0003909,1.61e-08,2;UBERON:0003835,1.61e-08,2;UBERON:0001637,1.99e-08,42;UBERON:0003509,1.99e-08,42;UBERON:0004572,1.99e-08,42;UBERON:0001829,2.87e-08,2;UBERON:0004089,2.87e-08,2;UBERON:0004573,3.68e-07,33;UBERON:0004571,3.68e-07,33 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,1.59009925893364,0,1.73570250803797,0.56530794192401,0.419499436209906,0.550236083880135,1.25396979922086,0.775250277507987,0.35576626268671,0.33472061276467,4.43112248820062,2.28081631715554,2.4406205754817,1.10298924103761,3.24056779152704,0.803697554556718,0.44905874525234,0.112611480483322,0,0.949265659568129,0.916008719652036,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,2.80483547606892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,3.21031058919516,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0.599037001496973,0,0,0.739018197353989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.524545881349981,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.427149650270779,0.943225830597996,0,0,0,0,0,0,0.5013797880454,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0.781514011233092,0,0,0,0,0,0,0,0,1.09651553371436,0.496211178389294,0,0,0,0,0,0,0.443511850813194,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0.939839179798536,1.28915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0.23806443146374,0.0645889098360061,0.0620747142958579,0,0.0636471582781649,0.808468755832877,0.435433495793923,0.342233301085281,0.0673520530145875,0.358611026963382,0.332660356546013,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,1.59009925893364,0,1.73570250803797,0.56530794192401,0.419499436209906,0.550236083880135,1.25396979922086,0.775250277507987,0.35576626268671,0.33472061276467,4.43112248820062,2.28081631715554,2.4406205754817,1.10298924103761,3.24056779152704,0.803697554556718,0.44905874525234,0.112611480483322,0,0.949265659568129,0.916008719652036,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,2.80483547606892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,3.21031058919516,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0.599037001496973,0,0,0.739018197353989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.524545881349981,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.427149650270779,0.943225830597996,0,0,0,0,0,0,0.5013797880454,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0.781514011233092,0,0,0,0,0,0,0,0,1.09651553371436,0.496211178389294,0,0,0,0,0,0,0.443511850813194,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0.939839179798536,1.28915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0.23806443146374,0.0645889098360061,0.0620747142958579,0,0.0636471582781649,0.808468755832877,0.435433495793923,0.342233301085281,0.0673520530145875,0.358611026963382,0.332660356546013,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p4@PCDH12 | |short_description=p4@PCDH12 | ||
}} | }} |
Latest revision as of 05:32, 25 September 2015
Short description: | p4@PCDH12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PCDH12_5end |
Coexpression cluster: | C4469_Endothelial_lung_spleen_placenta_Hepatic_adipose_skeletal |
Association with transcript: | 1bp_to_AK027282_5end |
EntrezGene: | PCDH12 |
HGNC: | 8657 |
UniProt: | Q9NPG4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 1.23e-49 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.23e-49 | 18 |
endothelial cell of vascular tree | 9.30e-47 | 24 |
capillary endothelial cell | 1.43e-43 | 3 |
endothelial cell of artery | 3.83e-39 | 9 |
endothelial cell | 2.83e-38 | 36 |
aortic endothelial cell | 5.48e-38 | 6 |
meso-epithelial cell | 1.87e-30 | 45 |
thoracic aorta endothelial cell | 2.22e-29 | 2 |
lining cell | 1.98e-23 | 58 |
barrier cell | 1.98e-23 | 58 |
squamous epithelial cell | 9.13e-14 | 63 |
mesodermal cell | 1.05e-10 | 121 |
endothelial cell of sinusoid | 1.61e-08 | 2 |
endothelial cell of hepatic sinusoid | 1.61e-08 | 2 |