FFCP PHASE1:Hg19::chr3:14444063..14444133,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6533 | |EntrezGene=6533 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11052 | |HGNC=11052 | ||
|TSSclassifier=strong | |||
|UniProt=P31641,Q9BRI2,E9PDM3,F8WF95,B2RNU7 | |UniProt=P31641,Q9BRI2,E9PDM3,F8WF95,B2RNU7 | ||
|association_with_transcript=0bp_to_ENST00000360861,ENST00000416216,ENST00000427436,ENST00000428884,ENST00000435095,ENST00000454876,ENST00000458124,ENST00000490683,NM_001134367,NM_001134368,NM_003043,uc003byp.2,uc003byq.2,uc003byr.2,uc010hee.1,uc010hef.1,uc010heg.2_5end | |association_with_transcript=0bp_to_ENST00000360861,ENST00000416216,ENST00000427436,ENST00000428884,ENST00000435095,ENST00000454876,ENST00000458124,ENST00000490683,NM_001134367,NM_001134368,NM_003043,uc003byp.2,uc003byq.2,uc003byr.2,uc010hee.1,uc010hef.1,uc010heg.2_5end | ||
|cluster_id=chr3:14444063..14444133,+ | |||
|coexpression_cluster_id=C26 | |coexpression_cluster_id=C26 | ||
|description=CAGE_peak_1_at_SLC6A6_5end | |description=CAGE_peak_1_at_SLC6A6_5end | ||
|id=chr3:14444063..14444133,+ | |id=chr3:14444063..14444133,+ | ||
|ontology_enrichment_celltype=CL:0000860;6.81e-20;33!CL:0002057;6.81e-20;33!CL:0000473;2.72e-19;39!CL:0000234;2.72e-19;39!CL:0000576;6.24e-15;48!CL:0000766;2.36e-14;69!CL:0000763;4.93e-07;100 | |ontology_enrichment_celltype=CL:0000766!1.57e-31!76;CL:0000557!2.00e-27!71;CL:0002057!7.85e-26!42;CL:0002009!3.14e-25!65;CL:0000763!1.14e-24!112;CL:0000049!1.14e-24!112;CL:0002194!1.41e-24!63;CL:0000576!1.41e-24!63;CL:0000040!1.41e-24!63;CL:0000559!1.41e-24!63;CL:0000860!4.88e-24!45;CL:0000839!5.55e-24!70;CL:0000738!1.55e-23!140;CL:0000037!8.02e-19!172;CL:0000566!8.02e-19!172;CL:0002032!2.27e-18!165;CL:0000837!2.27e-18!165;CL:0000988!8.42e-18!182;CL:0002031!3.12e-16!124;CL:0002087!5.75e-16!119 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;6.81e-20;33!CL:0002057;6.81e-20;33!CL:0000473;2.72e-19;39!CL:0000234;2.72e-19;39!CL:0000576;6.24e-15;48!CL:0000766;2.36e-14;69!CL:0000763;4.93e-07;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.92e-33,72;CL:0000473,5.26e-29,48;CL:0000234,5.26e-29,48;CL:0000557,1.40e-28,67;CL:0002009,2.12e-26,61;CL:0000860,7.85e-26,42;CL:0002057,7.85e-26,42;CL:0002194,9.31e-26,59;CL:0000576,9.31e-26,59;CL:0000040,9.31e-26,59;CL:0000559,9.31e-26,59;CL:0000763,3.18e-25,108;CL:0000049,3.18e-25,108;CL:0000839,5.49e-25,66;CL:0000738,6.60e-24,136;CL:0000037,5.18e-19,168;CL:0002032,1.43e-18,161;CL:0000837,1.43e-18,161;CL:0000988,3.14e-18,177;CL:0002031,1.65e-16,120;CL:0002087,2.96e-16,115 | |||
|ontology_enrichment_development_v019=CL:0002057;7.52e-19;42!CL:0000049;6.58e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.32e-29!102;UBERON:0003061!3.32e-29!102;UBERON:0002371!1.30e-25!80;UBERON:0002193!3.38e-25!112;UBERON:0001474!1.44e-21!86;UBERON:0004765!8.91e-18!101;UBERON:0001434!8.91e-18!101;UBERON:0002405!1.45e-14!115;UBERON:0003081!5.35e-12!216;UBERON:0007023!8.51e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.58e-30,98;UBERON:0003061,5.58e-30,98;UBERON:0002371,1.59e-26,76;UBERON:0002193,9.13e-26,108;UBERON:0001474,3.04e-22,82;UBERON:0002405,5.10e-21,93;UBERON:0004765,2.49e-19,90;UBERON:0001434,1.28e-17,100;UBERON:0003081,6.18e-11,203;UBERON:0007023,9.05e-07,114 | |||
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89231 | ||
|short_description=p1@SLC6A6 | |short_description=p1@SLC6A6 | ||
}} | }} |
Latest revision as of 05:38, 25 September 2015
Short description: | p1@SLC6A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC6A6_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000360861, ENST00000416216, ENST00000427436, ENST00000428884, ENST00000435095, ENST00000454876, ENST00000458124, ENST00000490683, NM_001134367, NM_001134368, NM_003043, uc003byp.2, uc003byq.2, uc003byr.2, uc010hee.1, uc010hef.1, uc010heg.2_5end |
EntrezGene: | SLC6A6 |
HGNC: | 11052 |
UniProt: | P31641Q9BRI2E9PDM3F8WF95B2RNU7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.92e-33 | 72 |
defensive cell | 5.26e-29 | 48 |
phagocyte | 5.26e-29 | 48 |
granulocyte monocyte progenitor cell | 1.40e-28 | 67 |
macrophage dendritic cell progenitor | 2.12e-26 | 61 |
classical monocyte | 7.85e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.85e-26 | 42 |
monopoietic cell | 9.31e-26 | 59 |
monocyte | 9.31e-26 | 59 |
monoblast | 9.31e-26 | 59 |
promonocyte | 9.31e-26 | 59 |
myeloid cell | 3.18e-25 | 108 |
common myeloid progenitor | 3.18e-25 | 108 |
myeloid lineage restricted progenitor cell | 5.49e-25 | 66 |
leukocyte | 6.60e-24 | 136 |
hematopoietic stem cell | 5.18e-19 | 168 |
hematopoietic oligopotent progenitor cell | 1.43e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.43e-18 | 161 |
hematopoietic cell | 3.14e-18 | 177 |
hematopoietic lineage restricted progenitor cell | 1.65e-16 | 120 |
nongranular leukocyte | 2.96e-16 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.58e-30 | 98 |
blood island | 5.58e-30 | 98 |
bone marrow | 1.59e-26 | 76 |
hemolymphoid system | 9.13e-26 | 108 |
bone element | 3.04e-22 | 82 |
immune system | 5.10e-21 | 93 |
skeletal element | 2.49e-19 | 90 |
skeletal system | 1.28e-17 | 100 |
lateral plate mesoderm | 6.18e-11 | 203 |
adult organism | 9.05e-07 | 114 |