FFCP PHASE1:Mm9::chr4:134708451..134708469,+: Difference between revisions
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{{FFCP|EntrezGene=12399|HGNC=|MCL_coexpression_id=893|UniProt=Q64131|association_with_transcript=40bp_to_ENSMUST00000119564,uc008vgc.1_5end|description=CAGE_peak_1_at_Runx3_5end|id=chr4:134708451..134708469,+|ontology_enrichment_celltype=CL:0000988!8.69e-14!32;CL:0002032!8.69e-14!32;CL:0000037!8.69e-14!32;CL:0000566!8.69e-14!32;CL:0000837!8.69e-14!32;CL:0002031!2.88e-11!25;CL:0000838!9.61e-09!12;CL:0000084!4.13e-08!11;CL:0000827!4.13e-08!11;CL:0002320!4.66e-08!46;CL:0000134!4.66e-08!46;CL:0000049!1.17e-07!19;CL:0000542!2.07e-07!13;CL:0000051!2.07e-07!13;CL:0000791!4.40e-07!9;CL:0000789!4.40e-07!9;CL:0002420!4.40e-07!9;CL:0002419!4.40e-07!9;CL:0000790!4.40e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.11e-16,32;CL:0002032,1.11e-16,32;CL:0000037,1.11e-16,32;CL:0000837,1.11e-16,32;CL:0002031,1.91e-13,25;CL:0002320,5.56e-10,46;CL:0000134,5.56e-10,46;CL:0000838,6.56e-10,12;CL:0000049,3.34e-09,19;CL:0000084,3.56e-09,11;CL:0000827,3.56e-09,11;CL:0000542,1.10e-08,13;CL:0000051,1.10e-08,13;CL:0000219,4.42e-08,54;CL:0000791,5.55e-08,9;CL:0000789,5.55e-08,9;CL:0002420,5.55e-08,9;CL:0002419,5.55e-08,9;CL:0000790,5.55e-08,9;CL:0000050,2.60e-07,9;CL:0000624,3.27e-07,8;CL:0000763,4.31e-07,16;CL:0000738,7.62e-07,17;CL:0002087,7.62e-07,17|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.31e-14!48;UBERON:0002390!5.01e-13!45;UBERON:0003061!5.01e-13!45;UBERON:0002405!3.83e-11!70;UBERON:0004177!4.78e-11!29;UBERON:0003408!1.02e-08!24;UBERON:0002370!1.35e-08!23;UBERON:0000974!1.35e-08!23;UBERON:0004807!1.35e-08!23;UBERON:0005058!1.35e-08!23;UBERON:0003351!1.35e-08!23;UBERON:0009113!1.35e-08!23;UBERON:0003295!1.35e-08!23;UBERON:0009722!1.35e-08!23;UBERON:0005562!1.35e-08!23;UBERON:0007690!1.35e-08!23;UBERON:0003081!1.35e-08!88;UBERON:0006562!1.80e-08!24;UBERON:0001557!1.80e-08!24;UBERON:0001042!1.80e-08!24;UBERON:0008814!1.80e-08!24;UBERON:0009145!1.80e-08!24;UBERON:0002384!4.66e-08!46;UBERON:0005057!1.74e-07!51;UBERON:0003102!7.63e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.61e-17,48;UBERON:0002405,1.61e-17,48;UBERON:0002390,6.11e-16,45;UBERON:0003061,6.11e-16,45;UBERON:0004177,1.99e-13,29;UBERON:0005057,1.99e-13,29;UBERON:0003408,1.10e-10,24;UBERON:0002370,1.48e-10,23;UBERON:0000974,1.48e-10,23;UBERON:0004807,1.48e-10,23;UBERON:0005058,1.48e-10,23;UBERON:0003351,1.48e-10,23;UBERON:0009113,1.48e-10,23;UBERON:0003295,1.48e-10,23;UBERON:0009722,1.48e-10,23;UBERON:0005562,1.48e-10,23;UBERON:0007690,1.48e-10,23;UBERON:0006562,2.18e-10,24;UBERON:0001557,2.18e-10,24;UBERON:0001042,2.18e-10,24;UBERON:0008814,2.18e-10,24;UBERON:0009145,2.18e-10,24;UBERON:0000077,2.19e-10,35;UBERON:0002384,5.56e-10,46;UBERON:0003081,1.84e-08,87;UBERON:0000072,3.37e-08,27;UBERON:0000153,2.10e-07,43|phase1_expression=0.160148847104794,0,0.454999239389536,0,0,0.16787927191189,0,11.6210991097419,77.71537462772,66.2402609491241,11.6428218393343,13.0028619162398,28.0769197087177,29.0235736031071,16.6554880907831,8.30148596298286,4.89693314689703,33.5967206106523,27.5600011547535,37.7706790100247,1.44573593256819,10.425549876093,13.3211892460857,4.63978026100879,4.12936705920906,0.57423196411502,0,0,0.950117097281869,1.00812051903972,0.443461021310609,24.7661962649256,37.5189520426588,15.8481681015439,0,0,0,1.25559489221072,0,3.14114246384279,2.35292595212406,3.41522742479223,4.36959317728038,0.125896817975577,0,0,0,0,1.97717564461025,1.36100929351998,0,0,30.0330864843348,53.6767985088395,42.011724892808,0.257259436035947,0,1.03134418455488,0,0,0,0,0,1.7997994345628,0,0.7104801149461,2.99600110518405,1.15265491596466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372798891650601,3.02904773332736,0.226714680320357,0.579728977403356,0.860423876981386,0,0,0,0,2.24711072210803,1.36344258062446,2.59786004602869,3.5333957451034,0,0,0,0,0,0,0,2.8545969929765,44.5373159873135,5.19547486726887,0.346970653532272,0,0.461230994512117,0.753613202763113,0.705532242814229,1.0053327306374,0,1.87979163995885,7.07688441559899,4.85300549842228,7.50861162765338,5.81850303762267,0,0,0,2.29911349687732,55.9536631442648,27.5955256256968,31.1322056329008,0,0,0,0,0,0,0,0.101839363850316,3.85661608891288,0.505445516867349,0.420883711772948,0.390361328888111,0,0.720248519221397,1.05493372485001,0,0,0,0,2.15567992932842,4.53854592402766,8.97350733236139,9.64461222681329,8.06337022754234,9.4028084960985,6.79081050146213,0,10.5331978096985,13.6394390770799,12.2190304740105,0.207125772535502,0,0,1.18372367792605,0,0,0,0.268273401399619,0.350296027101508,0.493679549740441,0.492502392237286,0.648550476366846,0.584799949701329,0.658650345873152,0.268412837520744,0,0,0.330418782983798,1.32225283331772,0,0.464473343720877,1.03093969057675,1.00841762311671,0.22237804384487,0.190225626112559,1.89811624617805,0.658795818896044,0.754005626400808,1.1937388322469,0.58489226135736,1.79763881730844,1.51296634912286,1.7922714592893,0.189667900953082,0,0,0,0,0.280543279561274,0.126473074248515,0.738050739898011,0.627994911365499,0.2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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12399 | |||
|HGNC= | |||
|MCL_coexpression_id=893 | |||
|TSSclassifier=NA | |||
|UniProt=Q64131 | |||
|association_with_transcript=40bp_to_ENSMUST00000119564,uc008vgc.1_5end | |||
|cluster_id=chr4:134708451..134708469,+ | |||
|description=CAGE_peak_1_at_Runx3_5end | |||
|id=chr4:134708451..134708469,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.69e-14!32;CL:0002032!8.69e-14!32;CL:0000037!8.69e-14!32;CL:0000566!8.69e-14!32;CL:0000837!8.69e-14!32;CL:0002031!2.88e-11!25;CL:0000838!9.61e-09!12;CL:0000084!4.13e-08!11;CL:0000827!4.13e-08!11;CL:0002320!4.66e-08!46;CL:0000134!4.66e-08!46;CL:0000049!1.17e-07!19;CL:0000542!2.07e-07!13;CL:0000051!2.07e-07!13;CL:0000791!4.40e-07!9;CL:0000789!4.40e-07!9;CL:0002420!4.40e-07!9;CL:0002419!4.40e-07!9;CL:0000790!4.40e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.11e-16,32;CL:0002032,1.11e-16,32;CL:0000037,1.11e-16,32;CL:0000837,1.11e-16,32;CL:0002031,1.91e-13,25;CL:0002320,5.56e-10,46;CL:0000134,5.56e-10,46;CL:0000838,6.56e-10,12;CL:0000049,3.34e-09,19;CL:0000084,3.56e-09,11;CL:0000827,3.56e-09,11;CL:0000542,1.10e-08,13;CL:0000051,1.10e-08,13;CL:0000219,4.42e-08,54;CL:0000791,5.55e-08,9;CL:0000789,5.55e-08,9;CL:0002420,5.55e-08,9;CL:0002419,5.55e-08,9;CL:0000790,5.55e-08,9;CL:0000050,2.60e-07,9;CL:0000624,3.27e-07,8;CL:0000763,4.31e-07,16;CL:0000738,7.62e-07,17;CL:0002087,7.62e-07,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.31e-14!48;UBERON:0002390!5.01e-13!45;UBERON:0003061!5.01e-13!45;UBERON:0002405!3.83e-11!70;UBERON:0004177!4.78e-11!29;UBERON:0003408!1.02e-08!24;UBERON:0002370!1.35e-08!23;UBERON:0000974!1.35e-08!23;UBERON:0004807!1.35e-08!23;UBERON:0005058!1.35e-08!23;UBERON:0003351!1.35e-08!23;UBERON:0009113!1.35e-08!23;UBERON:0003295!1.35e-08!23;UBERON:0009722!1.35e-08!23;UBERON:0005562!1.35e-08!23;UBERON:0007690!1.35e-08!23;UBERON:0003081!1.35e-08!88;UBERON:0006562!1.80e-08!24;UBERON:0001557!1.80e-08!24;UBERON:0001042!1.80e-08!24;UBERON:0008814!1.80e-08!24;UBERON:0009145!1.80e-08!24;UBERON:0002384!4.66e-08!46;UBERON:0005057!1.74e-07!51;UBERON:0003102!7.63e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.61e-17,48;UBERON:0002405,1.61e-17,48;UBERON:0002390,6.11e-16,45;UBERON:0003061,6.11e-16,45;UBERON:0004177,1.99e-13,29;UBERON:0005057,1.99e-13,29;UBERON:0003408,1.10e-10,24;UBERON:0002370,1.48e-10,23;UBERON:0000974,1.48e-10,23;UBERON:0004807,1.48e-10,23;UBERON:0005058,1.48e-10,23;UBERON:0003351,1.48e-10,23;UBERON:0009113,1.48e-10,23;UBERON:0003295,1.48e-10,23;UBERON:0009722,1.48e-10,23;UBERON:0005562,1.48e-10,23;UBERON:0007690,1.48e-10,23;UBERON:0006562,2.18e-10,24;UBERON:0001557,2.18e-10,24;UBERON:0001042,2.18e-10,24;UBERON:0008814,2.18e-10,24;UBERON:0009145,2.18e-10,24;UBERON:0000077,2.19e-10,35;UBERON:0002384,5.56e-10,46;UBERON:0003081,1.84e-08,87;UBERON:0000072,3.37e-08,27;UBERON:0000153,2.10e-07,43 | |||
|phase1_expression=0.160148847104794,0,0.454999239389536,0,0,0.16787927191189,0,11.6210991097419,77.71537462772,66.2402609491241,11.6428218393343,13.0028619162398,28.0769197087177,29.0235736031071,16.6554880907831,8.30148596298286,4.89693314689703,33.5967206106523,27.5600011547535,37.7706790100247,1.44573593256819,10.425549876093,13.3211892460857,4.63978026100879,4.12936705920906,0.57423196411502,0,0,0.950117097281869,1.00812051903972,0.443461021310609,24.7661962649256,37.5189520426588,15.8481681015439,0,0,0,1.25559489221072,0,3.14114246384279,2.35292595212406,3.41522742479223,4.36959317728038,0.125896817975577,0,0,0,0,1.97717564461025,1.36100929351998,0,0,30.0330864843348,53.6767985088395,42.011724892808,0.257259436035947,0,1.03134418455488,0,0,0,0,0,1.7997994345628,0,0.7104801149461,2.99600110518405,1.15265491596466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372798891650601,3.02904773332736,0.226714680320357,0.579728977403356,0.860423876981386,0,0,0,0,2.24711072210803,1.36344258062446,2.59786004602869,3.5333957451034,0,0,0,0,0,0,0,2.8545969929765,44.5373159873135,5.19547486726887,0.346970653532272,0,0.461230994512117,0.753613202763113,0.705532242814229,1.0053327306374,0,1.87979163995885,7.07688441559899,4.85300549842228,7.50861162765338,5.81850303762267,0,0,0,2.29911349687732,55.9536631442648,27.5955256256968,31.1322056329008,0,0,0,0,0,0,0,0.101839363850316,3.85661608891288,0.505445516867349,0.420883711772948,0.390361328888111,0,0.720248519221397,1.05493372485001,0,0,0,0,2.15567992932842,4.53854592402766,8.97350733236139,9.64461222681329,8.06337022754234,9.4028084960985,6.79081050146213,0,10.5331978096985,13.6394390770799,12.2190304740105,0.207125772535502,0,0,1.18372367792605,0,0,0,0.268273401399619,0.350296027101508,0.493679549740441,0.492502392237286,0.648550476366846,0.584799949701329,0.658650345873152,0.268412837520744,0,0,0.330418782983798,1.32225283331772,0,0.464473343720877,1.03093969057675,1.00841762311671,0.22237804384487,0.190225626112559,1.89811624617805,0.658795818896044,0.754005626400808,1.1937388322469,0.58489226135736,1.79763881730844,1.51296634912286,1.7922714592893,0.189667900953082,0,0,0,0,0.280543279561274,0.126473074248515,0.738050739898011,0.627994911365499,0.246794327843601,0.296452627087149,1.83529616287703,3.53806191203765,3.59779379815766,3.44862206360455,2.894125917029,1.01850340712568,2.5892652370573,2.2698931748505,0.823684239564244,1.43768206527355,0.744281895337007,0.936113019343682,0.757736633841335,0.896987067609561,0,5.35784251483154,0.37898282354097,0.162964976442026,0.169745085775188,0.234690248288502,0.335012514883631,0,0.195133647857799,0.945810864637146,1.32878813789265,1.11618338060241,2.94953966488328,1.89953480052485,2.16973587872267,0,0,2.45882136509518,1.37968373152366,0,0,0,0.757412781613119,0,0,0,0,0,0.283076530788832,0,0,0,0,0.283880170416537,0.35613120733451,0.162886959353576,2.47455184458803,0,0,0.302323556964751,0.565815239267694,0.885905678642318,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,1.03135543248187,0.340439605753788,0.540183282093931,0.129358683782755,0.214337035031592,0.709360934569094,0.356737635204141,0.658196082408484,0.913394847343798,0.704015124191131,0,0.441056796109924,4.122156323537,9.36493674836252,6.81536051688161,5.01363844813173,1.96969079694074,2.04036585640896,0,20.3336348149445,3.09580301944834,5.74103034846106,6.40452753815949,8.20165366326151,10.2950177942935,55.0730113180091,44.3646103865996,44.6385915388289,0.954670618015114,0.158167996790568,0,0.324016022465404,0,0.218362563746178,0.539457385539283,0.909188012978695,0,0.90730481304255,2.4853572523477,0.56369293868419,0.149516546043979,0.165458490457098,0.194451188344048,0.387479470433193,0.337912250981556,0.234714477291508,1.17183946359555,6.8158573876712,1.93267296660805,1.44015003128933,8.53230025696081,10.5417111950885,10.3738066736476,13.3818447667129,12.1738153053887,13.9076948346885,13.5820857957565,10.9290250109187,6.86571859647404,8.99240318528998,8.36857336635776,10.1356195969343,7.02346443974405,8.6488907614361,1.13365191807606,0.665957860122194,0.717710852875806,0.167884616364078,1.54551675225752,2.064507229963,1.46521299413812,1.92931541171159,1.00314420807073,0,0,0,0,0,0,0,0,0,0,1.03787347584177,2.39414924040619,1.36586884603307,4.86213434136588,3.77303692730368,3.30918315210025,3.33370091702423,2.26638562962784,2.24643446714271,2.52697211763797,3.29523089857312,2.45214243801899,2.24739617927718,3.13723246783859,3.27382173046996,2.85776214769844,4.05595140806994,2.12200142510076,5.35711671044299,2.79677948255355,2.74295401908332,2.66213709239006,1.90748951957857,3.63366041580821,2.82328141245992,3.46919892355874,2.74391959309159,2.63069711437843,2.30866993537965,5.05028044491965,2.13543032623513,4.0386837773981,3.27384834535751,1.54936841185966,3.2794123866794,1.99848462350357,2.33931608445408,3.00819475667618,3.82576664137687,3.30887128679273,2.31867835620421 | |||
|short_description=p1@Runx3 | |||
}} |
Latest revision as of 12:29, 26 September 2015
Short description: | p1@Runx3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Runx3_5end |
Coexpression cluster: | MCL_coexpression_mm9:893 |
Association with transcript: | 40bp_to_ENSMUST00000119564, uc008vgc.1_5end |
EntrezGene: | Runx3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.11e-16 | 32 |
hematopoietic oligopotent progenitor cell | 1.11e-16 | 32 |
hematopoietic stem cell | 1.11e-16 | 32 |
hematopoietic multipotent progenitor cell | 1.11e-16 | 32 |
hematopoietic lineage restricted progenitor cell | 1.91e-13 | 25 |
connective tissue cell | 5.56e-10 | 46 |
mesenchymal cell | 5.56e-10 | 46 |
lymphoid lineage restricted progenitor cell | 6.56e-10 | 12 |
common myeloid progenitor | 3.34e-09 | 19 |
T cell | 3.56e-09 | 11 |
pro-T cell | 3.56e-09 | 11 |
lymphocyte | 1.10e-08 | 13 |
common lymphoid progenitor | 1.10e-08 | 13 |
motile cell | 4.42e-08 | 54 |
mature alpha-beta T cell | 5.55e-08 | 9 |
alpha-beta T cell | 5.55e-08 | 9 |
immature T cell | 5.55e-08 | 9 |
mature T cell | 5.55e-08 | 9 |
immature alpha-beta T cell | 5.55e-08 | 9 |
megakaryocyte-erythroid progenitor cell | 2.60e-07 | 9 |
CD4-positive, alpha-beta T cell | 3.27e-07 | 8 |
myeloid cell | 4.31e-07 | 16 |
leukocyte | 7.62e-07 | 17 |
nongranular leukocyte | 7.62e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.61e-17 | 48 |
immune system | 1.61e-17 | 48 |
hematopoietic system | 6.11e-16 | 45 |
blood island | 6.11e-16 | 45 |
hemopoietic organ | 1.99e-13 | 29 |
immune organ | 1.99e-13 | 29 |
gland of gut | 1.10e-10 | 24 |
thymus | 1.48e-10 | 23 |
neck | 1.48e-10 | 23 |
respiratory system epithelium | 1.48e-10 | 23 |
hemolymphoid system gland | 1.48e-10 | 23 |
pharyngeal epithelium | 1.48e-10 | 23 |
thymic region | 1.48e-10 | 23 |
pharyngeal gland | 1.48e-10 | 23 |
entire pharyngeal arch endoderm | 1.48e-10 | 23 |
thymus primordium | 1.48e-10 | 23 |
early pharyngeal endoderm | 1.48e-10 | 23 |
pharynx | 2.18e-10 | 24 |
upper respiratory tract | 2.18e-10 | 24 |
chordate pharynx | 2.18e-10 | 24 |
pharyngeal arch system | 2.18e-10 | 24 |
pharyngeal region of foregut | 2.18e-10 | 24 |
mixed endoderm/mesoderm-derived structure | 2.19e-10 | 35 |
connective tissue | 5.56e-10 | 46 |
lateral plate mesoderm | 1.84e-08 | 87 |
segment of respiratory tract | 3.37e-08 | 27 |
anterior region of body | 2.10e-07 | 43 |