FFCP PHASE1:Mm9::chr15:100701428..100701439,+: Difference between revisions
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{{FFCP|EntrezGene=20273|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-18bp_to_uc007xsi.1_5end|description=CAGE_peak_5_at_Scn8a_5end|id=chr15:100701428..100701439,+|ontology_enrichment_celltype=CL:0000117!2.95e-13!23;CL:0000337!2.95e-13!23;CL:0000540!1.84e-08!33;CL:0000047!1.84e-08!33;CL:0000031!1.84e-08!33;CL:0000404!1.84e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.05e-10,23;CL:0000337,1.05e-10,23;CL:0002610,1.51e-08,3;CL:0002614,9.54e-08,3;CL:0002612,1.85e-07,3;CL:0000540,7.64e-07,33;CL:0000047,7.64e-07,33;CL:0000031,7.64e-07,33;CL:0000404,7.64e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.13e-28!52;UBERON:0005068!6.13e-28!52;UBERON:0006241!6.13e-28!52;UBERON:0007135!6.13e-28!52;UBERON:0000955!4.11e-26!50;UBERON:0006238!4.11e-26!50;UBERON:0002616!3.61e-25!49;UBERON:0002020!1.05e-24!34;UBERON:0002346!1.01e-23!71;UBERON:0003075!1.01e-23!71;UBERON:0007284!1.01e-23!71;UBERON:0001017!1.01e-23!73;UBERON:0005743!1.01e-23!73;UBERON:0000073!1.08e-23!75;UBERON:0001016!1.08e-23!75;UBERON:0000033!7.95e-23!63;UBERON:0002791!7.36e-20!29;UBERON:0003528!7.36e-20!29;UBERON:0001893!7.36e-20!29;UBERON:0004121!8.13e-18!102;UBERON:0000924!8.13e-18!102;UBERON:0006601!8.13e-18!102;UBERON:0003080!1.12e-17!40;UBERON:0003056!3.70e-17!49;UBERON:0002780!1.08e-16!39;UBERON:0001890!1.08e-16!39;UBERON:0006240!1.08e-16!39;UBERON:0000956!1.92e-13!21;UBERON:0001869!1.92e-13!21;UBERON:0000203!1.92e-13!21;UBERON:0007811!4.43e-13!86;UBERON:0002021!1.38e-12!10;UBERON:0000411!1.38e-12!10;UBERON:0001950!1.38e-12!10;UBERON:0002619!4.45e-12!17;UBERON:0000153!1.39e-11!94;UBERON:0003076!3.03e-11!12;UBERON:0003057!3.03e-11!12;UBERON:0002298!6.93e-08!6;UBERON:0002420!1.11e-07!8;UBERON:0007245!1.11e-07!8;UBERON:0010009!1.11e-07!8;UBERON:0010011!1.11e-07!8;UBERON:0000454!1.11e-07!8;UBERON:0002240!2.87e-07!6;UBERON:0005174!2.87e-07!6;UBERON:0001137!2.87e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.99e-41,54;UBERON:0001049,4.64e-37,52;UBERON:0005068,4.64e-37,52;UBERON:0006241,4.64e-37,52;UBERON:0007135,4.64e-37,52;UBERON:0001017,2.69e-33,73;UBERON:0001016,3.06e-32,75;UBERON:0002346,5.60e-29,64;UBERON:0003075,5.60e-29,64;UBERON:0007284,5.60e-29,64;UBERON:0002020,5.78e-29,34;UBERON:0000955,8.95e-28,47;UBERON:0006238,8.95e-28,47;UBERON:0002616,4.08e-26,46;UBERON:0002021,1.18e-25,10;UBERON:0000411,1.18e-25,10;UBERON:0001950,1.18e-25,10;UBERON:0010371,1.18e-24,73;UBERON:0004121,4.14e-24,95;UBERON:0000924,4.14e-24,95;UBERON:0006601,4.14e-24,95;UBERON:0003528,4.82e-20,29;UBERON:0002791,4.82e-20,29;UBERON:0001893,4.82e-20,29;UBERON:0003076,5.60e-20,12;UBERON:0003057,5.60e-20,12;UBERON:0003080,9.32e-20,40;UBERON:0010314,2.67e-18,92;UBERON:0002780,4.68e-18,39;UBERON:0001890,4.68e-18,39;UBERON:0006240,4.68e-18,39;UBERON:0002619,1.69e-17,17;UBERON:0000956,1.72e-16,21;UBERON:0001869,1.72e-16,21;UBERON:0000203,1.72e-16,21;UBERON:0003056,2.51e-15,49;UBERON:0002240,4.95e-14,6;UBERON:0005174,4.95e-14,6;UBERON:0001137,4.95e-14,6;UBERON:0000025,1.41e-13,114;UBERON:0004111,2.78e-12,122;UBERON:0001948,1.55e-11,5;UBERON:0002315,1.55e-11,5;UBERON:0002950,4.44e-10,4;UBERON:0001891,4.44e-10,4;UBERON:0009616,4.44e-10,4;UBERON:0010286,4.44e-10,4;UBERON:0004684,1.51e-08,3;UBERON:0002275,1.51e-08,3;UBERON:0011216,1.94e-08,194;UBERON:0004733,6.13e-08,6;UBERON:0004732,6.13e-08,6;UBERON:0002028,6.13e-08,6;UBERON:0007277,6.13e-08,6;UBERON:0002038,9.54e-08,3;UBERON:0009663,9.54e-08,3;UBERON:0009661,9.54e-08,3;UBERON:0000125,9.54e-08,3;UBERON:0002308,9.54e-08,3;UBERON:0002257,1.85e-07,3;UBERON:0001896,5.91e-07,2;UBERON:0002298,5.91e-07,2;UBERON:0005290,5.91e-07,2;UBERON:0010096,5.91e-07,2;UBERON:0000483,9.35e-07,174|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,2.85650984403804,1.54607978666129,0.244981598429908,0.191690942036473,0,4.40463523997555,3.19218345212969,3.5329502648936,0.659431438650969,0.0914876436024097,0.52091337055676,3.07101298901519,2.25105044012672,1.83357897332172,2.65165726926301,1.13897344639282,1.1183966749518,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352766121407114,0,0,0,0,0,0,0,0,4.09893115816166,5.02672096352292,0,0,0,0,3.74476598512057,2.28750301409313,0.125654352112864,4.69325664519146,5.11430914660661,3.1168206683934,3.24482526135515,0,0,0,0,0,0,0,0,0.0680364991513279,0.512454881139399,0.187403449119458,0.517406741478031,0,0.189106080167819,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,0.411618449517138,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.210407459670956,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,5.9403718295483,5.50894926983355,0,0,0,0,0.215423397732799,0,0,0,0,0,0,1.28528526568723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,4.82105785227325,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.21227026878773,3.68260189205742,4.01026859407578,4.81188910562325,3.42541259885321,2.2661816921691,8.77529250301348,4.05289082901798,4.98456649882625,3.10656187051092,0.103787347584177,0,0,0,0.419226325255965,0.183843508450014,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.187283014939765,0.256100609619477,0.287177344778066,0,0,0.578727661391115,0.412085900803307,0.147198920134397,0,0,0.476872379894642,0,0.188218760830661,0.169229215783353,0.182927972872773,0.263069711437843,0.135804113845862,0,0.118635018124174,0.197008964751127,0.409231043169689,0.154936841185966,0,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0|short_description=p5@Scn8a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20273 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-18bp_to_uc007xsi.1_5end | |||
|cluster_id=chr15:100701428..100701439,+ | |||
|description=CAGE_peak_5_at_Scn8a_5end | |||
|id=chr15:100701428..100701439,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.95e-13!23;CL:0000337!2.95e-13!23;CL:0000540!1.84e-08!33;CL:0000047!1.84e-08!33;CL:0000031!1.84e-08!33;CL:0000404!1.84e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.05e-10,23;CL:0000337,1.05e-10,23;CL:0002610,1.51e-08,3;CL:0002614,9.54e-08,3;CL:0002612,1.85e-07,3;CL:0000540,7.64e-07,33;CL:0000047,7.64e-07,33;CL:0000031,7.64e-07,33;CL:0000404,7.64e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.13e-28!52;UBERON:0005068!6.13e-28!52;UBERON:0006241!6.13e-28!52;UBERON:0007135!6.13e-28!52;UBERON:0000955!4.11e-26!50;UBERON:0006238!4.11e-26!50;UBERON:0002616!3.61e-25!49;UBERON:0002020!1.05e-24!34;UBERON:0002346!1.01e-23!71;UBERON:0003075!1.01e-23!71;UBERON:0007284!1.01e-23!71;UBERON:0001017!1.01e-23!73;UBERON:0005743!1.01e-23!73;UBERON:0000073!1.08e-23!75;UBERON:0001016!1.08e-23!75;UBERON:0000033!7.95e-23!63;UBERON:0002791!7.36e-20!29;UBERON:0003528!7.36e-20!29;UBERON:0001893!7.36e-20!29;UBERON:0004121!8.13e-18!102;UBERON:0000924!8.13e-18!102;UBERON:0006601!8.13e-18!102;UBERON:0003080!1.12e-17!40;UBERON:0003056!3.70e-17!49;UBERON:0002780!1.08e-16!39;UBERON:0001890!1.08e-16!39;UBERON:0006240!1.08e-16!39;UBERON:0000956!1.92e-13!21;UBERON:0001869!1.92e-13!21;UBERON:0000203!1.92e-13!21;UBERON:0007811!4.43e-13!86;UBERON:0002021!1.38e-12!10;UBERON:0000411!1.38e-12!10;UBERON:0001950!1.38e-12!10;UBERON:0002619!4.45e-12!17;UBERON:0000153!1.39e-11!94;UBERON:0003076!3.03e-11!12;UBERON:0003057!3.03e-11!12;UBERON:0002298!6.93e-08!6;UBERON:0002420!1.11e-07!8;UBERON:0007245!1.11e-07!8;UBERON:0010009!1.11e-07!8;UBERON:0010011!1.11e-07!8;UBERON:0000454!1.11e-07!8;UBERON:0002240!2.87e-07!6;UBERON:0005174!2.87e-07!6;UBERON:0001137!2.87e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.99e-41,54;UBERON:0001049,4.64e-37,52;UBERON:0005068,4.64e-37,52;UBERON:0006241,4.64e-37,52;UBERON:0007135,4.64e-37,52;UBERON:0001017,2.69e-33,73;UBERON:0001016,3.06e-32,75;UBERON:0002346,5.60e-29,64;UBERON:0003075,5.60e-29,64;UBERON:0007284,5.60e-29,64;UBERON:0002020,5.78e-29,34;UBERON:0000955,8.95e-28,47;UBERON:0006238,8.95e-28,47;UBERON:0002616,4.08e-26,46;UBERON:0002021,1.18e-25,10;UBERON:0000411,1.18e-25,10;UBERON:0001950,1.18e-25,10;UBERON:0010371,1.18e-24,73;UBERON:0004121,4.14e-24,95;UBERON:0000924,4.14e-24,95;UBERON:0006601,4.14e-24,95;UBERON:0003528,4.82e-20,29;UBERON:0002791,4.82e-20,29;UBERON:0001893,4.82e-20,29;UBERON:0003076,5.60e-20,12;UBERON:0003057,5.60e-20,12;UBERON:0003080,9.32e-20,40;UBERON:0010314,2.67e-18,92;UBERON:0002780,4.68e-18,39;UBERON:0001890,4.68e-18,39;UBERON:0006240,4.68e-18,39;UBERON:0002619,1.69e-17,17;UBERON:0000956,1.72e-16,21;UBERON:0001869,1.72e-16,21;UBERON:0000203,1.72e-16,21;UBERON:0003056,2.51e-15,49;UBERON:0002240,4.95e-14,6;UBERON:0005174,4.95e-14,6;UBERON:0001137,4.95e-14,6;UBERON:0000025,1.41e-13,114;UBERON:0004111,2.78e-12,122;UBERON:0001948,1.55e-11,5;UBERON:0002315,1.55e-11,5;UBERON:0002950,4.44e-10,4;UBERON:0001891,4.44e-10,4;UBERON:0009616,4.44e-10,4;UBERON:0010286,4.44e-10,4;UBERON:0004684,1.51e-08,3;UBERON:0002275,1.51e-08,3;UBERON:0011216,1.94e-08,194;UBERON:0004733,6.13e-08,6;UBERON:0004732,6.13e-08,6;UBERON:0002028,6.13e-08,6;UBERON:0007277,6.13e-08,6;UBERON:0002038,9.54e-08,3;UBERON:0009663,9.54e-08,3;UBERON:0009661,9.54e-08,3;UBERON:0000125,9.54e-08,3;UBERON:0002308,9.54e-08,3;UBERON:0002257,1.85e-07,3;UBERON:0001896,5.91e-07,2;UBERON:0002298,5.91e-07,2;UBERON:0005290,5.91e-07,2;UBERON:0010096,5.91e-07,2;UBERON:0000483,9.35e-07,174 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,2.85650984403804,1.54607978666129,0.244981598429908,0.191690942036473,0,4.40463523997555,3.19218345212969,3.5329502648936,0.659431438650969,0.0914876436024097,0.52091337055676,3.07101298901519,2.25105044012672,1.83357897332172,2.65165726926301,1.13897344639282,1.1183966749518,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352766121407114,0,0,0,0,0,0,0,0,4.09893115816166,5.02672096352292,0,0,0,0,3.74476598512057,2.28750301409313,0.125654352112864,4.69325664519146,5.11430914660661,3.1168206683934,3.24482526135515,0,0,0,0,0,0,0,0,0.0680364991513279,0.512454881139399,0.187403449119458,0.517406741478031,0,0.189106080167819,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,0.411618449517138,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.210407459670956,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,5.9403718295483,5.50894926983355,0,0,0,0,0.215423397732799,0,0,0,0,0,0,1.28528526568723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,4.82105785227325,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.21227026878773,3.68260189205742,4.01026859407578,4.81188910562325,3.42541259885321,2.2661816921691,8.77529250301348,4.05289082901798,4.98456649882625,3.10656187051092,0.103787347584177,0,0,0,0.419226325255965,0.183843508450014,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.187283014939765,0.256100609619477,0.287177344778066,0,0,0.578727661391115,0.412085900803307,0.147198920134397,0,0,0.476872379894642,0,0.188218760830661,0.169229215783353,0.182927972872773,0.263069711437843,0.135804113845862,0,0.118635018124174,0.197008964751127,0.409231043169689,0.154936841185966,0,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0 | |||
|short_description=p5@Scn8a | |||
}} |
Latest revision as of 12:37, 26 September 2015
Short description: | p5@Scn8a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Scn8a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -18bp_to_uc007xsi.1_5end |
EntrezGene: | Scn8a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.05e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.05e-10 | 23 |
raphe nuclei neuron | 1.51e-08 | 3 |
neuron of the substantia nigra | 9.54e-08 | 3 |
neuron of the ventral spinal cord | 1.85e-07 | 3 |
neuron | 7.64e-07 | 33 |
neuronal stem cell | 7.64e-07 | 33 |
neuroblast | 7.64e-07 | 33 |
electrically signaling cell | 7.64e-07 | 33 |