FFCP PHASE1:Mm9::chr7:4636518..4636562,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr7:4636518..4636562,- to FFCP PHASE1:Mm9::chr7:4636518..4636562,-: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=66245 | |EntrezGene=66245 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q99P31 | |UniProt=Q99P31 | ||
|association_with_transcript=2bp_to_ENSMUST00000079970,NM_024172,uc009eyc.1,uc009eyd.1_5end | |||
|cluster_id=chr7:4636518..4636562,- | |||
|description=CAGE_peak_1_at_Hspbp1_5end | |||
|id=chr7:4636518..4636562,- | |||
|ontology_enrichment_celltype=CL:0000117!2.96e-12!23;CL:0000337!2.96e-12!23;CL:0000221!6.68e-12!44;CL:0000133!6.68e-12!44;CL:0002319!6.98e-12!43;CL:0000055!2.26e-09!50;CL:0000540!4.36e-09!33;CL:0000047!4.36e-09!33;CL:0000031!4.36e-09!33;CL:0000404!4.36e-09!33;CL:0000034!2.65e-07!97;CL:0000723!6.30e-07!91;CL:0000048!6.30e-07!91;CL:0000393!6.85e-07!39;CL:0000211!6.85e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.96e-12,23;CL:0000337,2.96e-12,23;CL:0000221,6.68e-12,44;CL:0000133,6.68e-12,44;CL:0002319,6.98e-12,43;CL:0000540,4.36e-09,33;CL:0000047,4.36e-09,33;CL:0000031,4.36e-09,33;CL:0000404,4.36e-09,33;CL:0000034,2.65e-07,97;CL:0000723,6.30e-07,91;CL:0000048,6.30e-07,91;CL:0000393,6.85e-07,39;CL:0000211,6.85e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.38e-24!75;UBERON:0001016!4.38e-24!75;UBERON:0001017!2.61e-23!73;UBERON:0005743!2.61e-23!73;UBERON:0001049!1.07e-20!52;UBERON:0005068!1.07e-20!52;UBERON:0006241!1.07e-20!52;UBERON:0007135!1.07e-20!52;UBERON:0000955!3.93e-19!50;UBERON:0006238!3.93e-19!50;UBERON:0002616!1.00e-18!49;UBERON:0004121!4.02e-18!102;UBERON:0000924!4.02e-18!102;UBERON:0006601!4.02e-18!102;UBERON:0002020!6.20e-18!34;UBERON:0002346!1.01e-17!71;UBERON:0003075!1.01e-17!71;UBERON:0007284!1.01e-17!71;UBERON:0000033!1.37e-16!63;UBERON:0003080!6.53e-16!40;UBERON:0002780!2.40e-15!39;UBERON:0001890!2.40e-15!39;UBERON:0006240!2.40e-15!39;UBERON:0002791!5.61e-15!29;UBERON:0003528!5.61e-15!29;UBERON:0001893!5.61e-15!29;UBERON:0003056!2.18e-14!49;UBERON:0007811!3.33e-11!86;UBERON:0000956!4.65e-11!21;UBERON:0001869!4.65e-11!21;UBERON:0000203!4.65e-11!21;UBERON:0000153!1.38e-10!94;UBERON:0002619!1.09e-09!17;UBERON:0002021!6.72e-08!10;UBERON:0000411!6.72e-08!10;UBERON:0001950!6.72e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.38e-24,75;UBERON:0001017,2.61e-23,73;UBERON:0000073,8.78e-22,54;UBERON:0001049,1.07e-20,52;UBERON:0005068,1.07e-20,52;UBERON:0006241,1.07e-20,52;UBERON:0007135,1.07e-20,52;UBERON:0002346,2.79e-18,64;UBERON:0003075,2.79e-18,64;UBERON:0007284,2.79e-18,64;UBERON:0004121,3.20e-18,95;UBERON:0000924,3.20e-18,95;UBERON:0006601,3.20e-18,95;UBERON:0002020,6.20e-18,34;UBERON:0000955,1.28e-17,47;UBERON:0006238,1.28e-17,47;UBERON:0002616,3.21e-17,46;UBERON:0003080,6.53e-16,40;UBERON:0002780,2.40e-15,39;UBERON:0001890,2.40e-15,39;UBERON:0006240,2.40e-15,39;UBERON:0003528,5.61e-15,29;UBERON:0002791,5.61e-15,29;UBERON:0001893,5.61e-15,29;UBERON:0010371,1.33e-14,73;UBERON:0010314,2.09e-14,92;UBERON:0003056,2.18e-14,49;UBERON:0000956,4.65e-11,21;UBERON:0001869,4.65e-11,21;UBERON:0000203,4.65e-11,21;UBERON:0002619,1.09e-09,17;UBERON:0002021,6.72e-08,10;UBERON:0000411,6.72e-08,10;UBERON:0001950,6.72e-08,10 | |||
|phase1_expression=16.4953312517938,8.37540978334467,5.45999087267443,3.0246421130683,3.50627010962443,9.73699777088961,11.9142446703718,17.1734020177296,25.4827587094517,31.3646465271471,72.9388544640651,68.1254237820173,12.1552518251156,13.5501623749446,18.9872564234928,13.7683181825082,13.2916756844348,11.0411757875383,12.2031845909108,8.48779303596061,16.4983982893075,17.1773345577532,19.3287843962812,9.75953779039781,12.8469197397615,9.18771142584032,7.32295393470427,10.1271479362368,10.4512880701006,10.0812051903972,16.4080577884925,24.7661962649256,22.1423323530445,15.8481681015439,18.7753552838328,24.1040235769814,23.0711372576477,3.76678467663217,5.4693474116666,2.09409497589519,1.76469446409304,1.36609096991689,1.45653105909346,16.366586336825,15.5106704765857,13.5824596599644,20.342174953049,25.5089432965122,21.3095597252438,17.4986909166855,12.8787507895334,34.5006154475932,14.5970867270231,10.8804321301702,10.0828139742739,10.5476368774738,10.3152038377952,7.73508138416164,30.5497855897993,52.3701069479313,40.5652098243955,24.7356508410466,20.4537803105562,25.1971920838792,30.6548572395762,35.524005747305,34.7536128201349,46.1061966385865,17.3161652555158,27.4062054813332,26.0802952075714,35.7063730504754,40.8606800760485,23.7632150477011,25.7824317039056,27.5765635983006,26.4278114398533,29.1127130834228,30.1068805182237,32.5759130693579,32.5696011224578,26.045668527838,37.4105218661851,32.0774687718058,32.2404302809069,33.8822873294718,28.7590795214188,36.1614924901083,31.4263702332714,18.5906037862692,9.27566363845369,13.7667820317022,15.6393406752783,12.9528765993076,14.2950811838487,8.96053774194671,15.1679973742292,14.827438064291,11.6903702071291,12.3668851078619,16.760366953425,5.13305909657271,5.09610479413291,0,18.6182295269644,22.0423082963336,23.7596489156948,11.7609396110632,9.32176381129818,15.5864246018066,19.6038419245734,17.9634632204163,18.2186242832286,15.2229866958149,11.0533384707563,13.1949920896159,13.3485282576562,11.8571472674328,11.4999371753484,11.3236794963186,9.27534377533653,7.75800405016355,13.0474232852686,14.6390398505774,17.8029700791437,8.17462576667492,18.5713442984176,21.5964983157627,19.3146745151058,33.7028938660851,21.9600289352941,29.2774640422974,38.7628234028777,35.5444485689159,35.9473317088039,30.0146336675352,11.4060087512354,8.08645308965605,12.3834151632501,9.04899980311838,19.1277051155174,25.9789378009824,17.1059023315082,14.7690721479001,12.7908618404496,16.1423287558911,15.3670828277955,13.7112786491678,24.1436152084783,16.8304411349359,17.9470146647228,18.4124415239163,14.1804097105055,12.537077994798,8.64284972913362,18.3111525473014,17.5553296828309,15.9555702411123,16.76564646434,21.3339545711567,21.5763975182609,13.3245925481151,19.176323582402,13.7734962223183,16.0437797402873,14.6496385192757,17.1694976895756,11.5597688943498,18.1015834904828,14.2825693748813,11.9171150032408,13.1579988682799,13.8316572633362,8.45500438190342,26.7068234676442,23.7709654596147,4.29544417878937,12.6936271998501,20.2623838008472,17.4177503895329,15.8506977426175,14.5212137728807,14.8993289376063,14.0766963323294,9.49058123089023,8.39964669092456,10.304743560811,6.76452004939913,8.38345574612217,7.19055526923377,11.8875927431082,6.37252074413975,25.4154987277129,20.4504837571415,28.1769339182701,14.255592949172,13.9645790760691,14.1674356178443,11.8252324422361,10.1851002105925,12.4028994994686,12.5865107200237,15.7119892356189,18.6866518402025,25.15955137449,24.5099702499491,16.0259495896917,23.3941844959844,18.0784354764808,11.5078454980324,10.2145192868272,13.1789478330279,10.0637744569148,7.44281895337007,12.1694692514679,13.1341016532498,10.7638448113147,14.473305640901,8.68339993783042,27.8552375302613,20.5335870316953,14.9375675482166,13.6120344007331,10.5528942188344,10.4739201989846,10.1469496886055,7.56648691709717,8.63712289630222,7.65382889555938,7.70157579163969,10.3610989119537,8.10034728056465,10.5553898757491,10.3342079925555,12.2941068254759,13.2449638226272,30.5046120976805,22.3874321391108,19.180388609071,10.6037789425837,12.304820557234,13.6653560503823,15.0796378412959,10.0366895140072,16.7099005561796,13.587673477864,19.02610297872,16.3663280430335,11.8586333383957,25.0630626809009,11.7810270722863,22.2582004584069,11.5649741141039,14.0224604526655,6.63725691699814,24.0352829793432,19.3487076457441,14.5225911412042,15.3556984298002,12.912276213645,10.8539883130653,11.2695456138027,13.5469003786194,9.7971394960103,10.5418608574999,7.21948802737308,16.3411010761818,16.3855595568492,22.2496936106338,19.5046701878749,13.6551979904551,16.7666688545946,13.3284706687718,17.6589670486468,11.4989136951218,12.2862601101016,5.07215315526412,6.26567761177624,9.20347232166662,10.072258463002,13.6084472163576,12.8029901801148,6.70405924248657,26.1449675834819,12.6444451790411,21.2578474002119,15.0007567169466,18.271740329455,12.7125631780553,14.6418030852174,21.7572390392135,20.852766396225,18.2423965421839,11.4560474161814,25.1487114897003,19.5186688441775,12.3126088536853,10.8725913927524,10.6997656235627,13.6212989848669,10.1663750542163,13.3495530411855,7.12882353104861,4.97071450469541,28.1846469342095,15.8487538806618,21.0132282880514,14.1949367491155,15.7574984642832,10.1373675294467,9.97536528488909,10.9371683268918,13.5268554309167,15.9445519745164,17.2818003754719,9.16432249821717,27.165178848882,19.1042380326579,19.0983609777359,14.859215740401,13.3116507703447,14.1830630433563,11.8151621739662,10.8034101444518,11.12619377163,10.4859232542314,6.43222012882366,9.1401249558313,6.66198342434943,14.964205318604,13.763129109192,10.4068073666992,19.4746154982331,11.204996453867,13.3254557570339,17.948859178192,22.2943114242228,7.52358156053045,41.7916363536629,44.6515479411962,40.6755814541972,41.4166169448287,46.5856113444037,42.3020582538232,41.1763725141402,40.9792294934041,41.6891016265468,36.7609821343792,20.3423201264986,17.9561193030464,22.1953687480374,16.2881500435757,20.5420899375423,13.236732608401,12.6680634846921,11.5379632053781,15.0832028508153,12.6348605881899,12.9274442944022,14.7128546281139,10.7687733590365,12.4849047189495,13.8419480183028,10.9547548995107,11.1248952907061,10.8029163459675,12.7746629249025,18.2526660966653,13.3719008430312,11.0034999818789,13.35242663705,14.3892952466005,12.9870944973156,13.9614103021266,12.4391021553485,10.2597187460759,13.4446072707403,11.7839877048125,11.1516917036724,11.6235289203165,9.00308294973317,13.1696315008071,13.696369379661,24.4814366379187,16.8430758080694,12.6773921888496,11.2860115920618,12.1325280515734,9.97031693167812 | |phase1_expression=16.4953312517938,8.37540978334467,5.45999087267443,3.0246421130683,3.50627010962443,9.73699777088961,11.9142446703718,17.1734020177296,25.4827587094517,31.3646465271471,72.9388544640651,68.1254237820173,12.1552518251156,13.5501623749446,18.9872564234928,13.7683181825082,13.2916756844348,11.0411757875383,12.2031845909108,8.48779303596061,16.4983982893075,17.1773345577532,19.3287843962812,9.75953779039781,12.8469197397615,9.18771142584032,7.32295393470427,10.1271479362368,10.4512880701006,10.0812051903972,16.4080577884925,24.7661962649256,22.1423323530445,15.8481681015439,18.7753552838328,24.1040235769814,23.0711372576477,3.76678467663217,5.4693474116666,2.09409497589519,1.76469446409304,1.36609096991689,1.45653105909346,16.366586336825,15.5106704765857,13.5824596599644,20.342174953049,25.5089432965122,21.3095597252438,17.4986909166855,12.8787507895334,34.5006154475932,14.5970867270231,10.8804321301702,10.0828139742739,10.5476368774738,10.3152038377952,7.73508138416164,30.5497855897993,52.3701069479313,40.5652098243955,24.7356508410466,20.4537803105562,25.1971920838792,30.6548572395762,35.524005747305,34.7536128201349,46.1061966385865,17.3161652555158,27.4062054813332,26.0802952075714,35.7063730504754,40.8606800760485,23.7632150477011,25.7824317039056,27.5765635983006,26.4278114398533,29.1127130834228,30.1068805182237,32.5759130693579,32.5696011224578,26.045668527838,37.4105218661851,32.0774687718058,32.2404302809069,33.8822873294718,28.7590795214188,36.1614924901083,31.4263702332714,18.5906037862692,9.27566363845369,13.7667820317022,15.6393406752783,12.9528765993076,14.2950811838487,8.96053774194671,15.1679973742292,14.827438064291,11.6903702071291,12.3668851078619,16.760366953425,5.13305909657271,5.09610479413291,0,18.6182295269644,22.0423082963336,23.7596489156948,11.7609396110632,9.32176381129818,15.5864246018066,19.6038419245734,17.9634632204163,18.2186242832286,15.2229866958149,11.0533384707563,13.1949920896159,13.3485282576562,11.8571472674328,11.4999371753484,11.3236794963186,9.27534377533653,7.75800405016355,13.0474232852686,14.6390398505774,17.8029700791437,8.17462576667492,18.5713442984176,21.5964983157627,19.3146745151058,33.7028938660851,21.9600289352941,29.2774640422974,38.7628234028777,35.5444485689159,35.9473317088039,30.0146336675352,11.4060087512354,8.08645308965605,12.3834151632501,9.04899980311838,19.1277051155174,25.9789378009824,17.1059023315082,14.7690721479001,12.7908618404496,16.1423287558911,15.3670828277955,13.7112786491678,24.1436152084783,16.8304411349359,17.9470146647228,18.4124415239163,14.1804097105055,12.537077994798,8.64284972913362,18.3111525473014,17.5553296828309,15.9555702411123,16.76564646434,21.3339545711567,21.5763975182609,13.3245925481151,19.176323582402,13.7734962223183,16.0437797402873,14.6496385192757,17.1694976895756,11.5597688943498,18.1015834904828,14.2825693748813,11.9171150032408,13.1579988682799,13.8316572633362,8.45500438190342,26.7068234676442,23.7709654596147,4.29544417878937,12.6936271998501,20.2623838008472,17.4177503895329,15.8506977426175,14.5212137728807,14.8993289376063,14.0766963323294,9.49058123089023,8.39964669092456,10.304743560811,6.76452004939913,8.38345574612217,7.19055526923377,11.8875927431082,6.37252074413975,25.4154987277129,20.4504837571415,28.1769339182701,14.255592949172,13.9645790760691,14.1674356178443,11.8252324422361,10.1851002105925,12.4028994994686,12.5865107200237,15.7119892356189,18.6866518402025,25.15955137449,24.5099702499491,16.0259495896917,23.3941844959844,18.0784354764808,11.5078454980324,10.2145192868272,13.1789478330279,10.0637744569148,7.44281895337007,12.1694692514679,13.1341016532498,10.7638448113147,14.473305640901,8.68339993783042,27.8552375302613,20.5335870316953,14.9375675482166,13.6120344007331,10.5528942188344,10.4739201989846,10.1469496886055,7.56648691709717,8.63712289630222,7.65382889555938,7.70157579163969,10.3610989119537,8.10034728056465,10.5553898757491,10.3342079925555,12.2941068254759,13.2449638226272,30.5046120976805,22.3874321391108,19.180388609071,10.6037789425837,12.304820557234,13.6653560503823,15.0796378412959,10.0366895140072,16.7099005561796,13.587673477864,19.02610297872,16.3663280430335,11.8586333383957,25.0630626809009,11.7810270722863,22.2582004584069,11.5649741141039,14.0224604526655,6.63725691699814,24.0352829793432,19.3487076457441,14.5225911412042,15.3556984298002,12.912276213645,10.8539883130653,11.2695456138027,13.5469003786194,9.7971394960103,10.5418608574999,7.21948802737308,16.3411010761818,16.3855595568492,22.2496936106338,19.5046701878749,13.6551979904551,16.7666688545946,13.3284706687718,17.6589670486468,11.4989136951218,12.2862601101016,5.07215315526412,6.26567761177624,9.20347232166662,10.072258463002,13.6084472163576,12.8029901801148,6.70405924248657,26.1449675834819,12.6444451790411,21.2578474002119,15.0007567169466,18.271740329455,12.7125631780553,14.6418030852174,21.7572390392135,20.852766396225,18.2423965421839,11.4560474161814,25.1487114897003,19.5186688441775,12.3126088536853,10.8725913927524,10.6997656235627,13.6212989848669,10.1663750542163,13.3495530411855,7.12882353104861,4.97071450469541,28.1846469342095,15.8487538806618,21.0132282880514,14.1949367491155,15.7574984642832,10.1373675294467,9.97536528488909,10.9371683268918,13.5268554309167,15.9445519745164,17.2818003754719,9.16432249821717,27.165178848882,19.1042380326579,19.0983609777359,14.859215740401,13.3116507703447,14.1830630433563,11.8151621739662,10.8034101444518,11.12619377163,10.4859232542314,6.43222012882366,9.1401249558313,6.66198342434943,14.964205318604,13.763129109192,10.4068073666992,19.4746154982331,11.204996453867,13.3254557570339,17.948859178192,22.2943114242228,7.52358156053045,41.7916363536629,44.6515479411962,40.6755814541972,41.4166169448287,46.5856113444037,42.3020582538232,41.1763725141402,40.9792294934041,41.6891016265468,36.7609821343792,20.3423201264986,17.9561193030464,22.1953687480374,16.2881500435757,20.5420899375423,13.236732608401,12.6680634846921,11.5379632053781,15.0832028508153,12.6348605881899,12.9274442944022,14.7128546281139,10.7687733590365,12.4849047189495,13.8419480183028,10.9547548995107,11.1248952907061,10.8029163459675,12.7746629249025,18.2526660966653,13.3719008430312,11.0034999818789,13.35242663705,14.3892952466005,12.9870944973156,13.9614103021266,12.4391021553485,10.2597187460759,13.4446072707403,11.7839877048125,11.1516917036724,11.6235289203165,9.00308294973317,13.1696315008071,13.696369379661,24.4814366379187,16.8430758080694,12.6773921888496,11.2860115920618,12.1325280515734,9.97031693167812 | ||
|short_description=p1@Hspbp1 | |||
}} | }} |
Latest revision as of 17:47, 26 September 2015
Short description: | p1@Hspbp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hspbp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 2bp_to_ENSMUST00000079970, NM_024172, uc009eyc.1, uc009eyd.1_5end |
EntrezGene: | Hspbp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.96e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.96e-12 | 23 |
ectodermal cell | 6.68e-12 | 44 |
neurectodermal cell | 6.68e-12 | 44 |
neural cell | 6.98e-12 | 43 |
neuron | 4.36e-09 | 33 |
neuronal stem cell | 4.36e-09 | 33 |
neuroblast | 4.36e-09 | 33 |
electrically signaling cell | 4.36e-09 | 33 |
stem cell | 2.65e-07 | 97 |
somatic stem cell | 6.30e-07 | 91 |
multi fate stem cell | 6.30e-07 | 91 |
electrically responsive cell | 6.85e-07 | 39 |
electrically active cell | 6.85e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.38e-24 | 75 |
central nervous system | 2.61e-23 | 73 |
regional part of nervous system | 8.78e-22 | 54 |
neural tube | 1.07e-20 | 52 |
neural rod | 1.07e-20 | 52 |
future spinal cord | 1.07e-20 | 52 |
neural keel | 1.07e-20 | 52 |
neurectoderm | 2.79e-18 | 64 |
neural plate | 2.79e-18 | 64 |
presumptive neural plate | 2.79e-18 | 64 |
ectoderm-derived structure | 3.20e-18 | 95 |
ectoderm | 3.20e-18 | 95 |
presumptive ectoderm | 3.20e-18 | 95 |
gray matter | 6.20e-18 | 34 |
brain | 1.28e-17 | 47 |
future brain | 1.28e-17 | 47 |
regional part of brain | 3.21e-17 | 46 |
anterior neural tube | 6.53e-16 | 40 |
regional part of forebrain | 2.40e-15 | 39 |
forebrain | 2.40e-15 | 39 |
future forebrain | 2.40e-15 | 39 |
brain grey matter | 5.61e-15 | 29 |
regional part of telencephalon | 5.61e-15 | 29 |
telencephalon | 5.61e-15 | 29 |
ecto-epithelium | 1.33e-14 | 73 |
structure with developmental contribution from neural crest | 2.09e-14 | 92 |
pre-chordal neural plate | 2.18e-14 | 49 |
cerebral cortex | 4.65e-11 | 21 |
cerebral hemisphere | 4.65e-11 | 21 |
pallium | 4.65e-11 | 21 |
regional part of cerebral cortex | 1.09e-09 | 17 |
occipital lobe | 6.72e-08 | 10 |
visual cortex | 6.72e-08 | 10 |
neocortex | 6.72e-08 | 10 |