FFCP PHASE1:Mm9::chr12:8506807..8506823,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11852 | |EntrezGene=11852 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=137 | |MCL_coexpression_id=137 | ||
|TSSclassifier=NA | |||
|UniProt=P62746,Q4FJM5 | |UniProt=P62746,Q4FJM5 | ||
|association_with_transcript=-16bp_to_ENSMUST00000067384,NM_007483,uc007mzp.1_5end | |association_with_transcript=-16bp_to_ENSMUST00000067384,NM_007483,uc007mzp.1_5end | ||
|cluster_id=chr12:8506807..8506823,- | |||
|description=CAGE_peak_1_at_Rhob_5end | |description=CAGE_peak_1_at_Rhob_5end | ||
|id=chr12:8506807..8506823,- | |id=chr12:8506807..8506823,- | ||
|ontology_enrichment_celltype=CL:0002319!3.51e-14!43;CL:0000221!4.78e-14!44;CL:0000133!4.78e-14!44;CL:0000055!1.03e-13!50;CL:0000540!8.03e-11!33;CL:0000047!8.03e-11!33;CL:0000031!8.03e-11!33;CL:0000404!8.03e-11!33;CL:0000393!4.09e-10!39;CL:0000211!4.09e-10!39;CL:0002321!1.17e-09!70;CL:0000220!1.17e-09!70;CL:0000144!3.80e-08!121;CL:0000012!3.80e-08!121;CL:0000117!6.47e-08!23;CL:0000337!6.47e-08!23;CL:0002371!3.78e-07!118 | |ontology_enrichment_celltype=CL:0002319!3.51e-14!43;CL:0000221!4.78e-14!44;CL:0000133!4.78e-14!44;CL:0000055!1.03e-13!50;CL:0000540!8.03e-11!33;CL:0000047!8.03e-11!33;CL:0000031!8.03e-11!33;CL:0000404!8.03e-11!33;CL:0000393!4.09e-10!39;CL:0000211!4.09e-10!39;CL:0002321!1.17e-09!70;CL:0000220!1.17e-09!70;CL:0000144!3.80e-08!121;CL:0000012!3.80e-08!121;CL:0000117!6.47e-08!23;CL:0000337!6.47e-08!23;CL:0002371!3.78e-07!118 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.51e-14,43;CL:0000221,4.78e-14,44;CL:0000133,4.78e-14,44;CL:0000540,8.03e-11,33;CL:0000047,8.03e-11,33;CL:0000031,8.03e-11,33;CL:0000404,8.03e-11,33;CL:0000393,4.09e-10,39;CL:0000211,4.09e-10,39;CL:0002321,1.17e-09,70;CL:0000117,6.47e-08,23;CL:0000337,6.47e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.46e-21!75;UBERON:0001016!5.46e-21!75;UBERON:0001017!2.33e-20!73;UBERON:0005743!2.33e-20!73;UBERON:0004121!2.54e-17!102;UBERON:0000924!2.54e-17!102;UBERON:0006601!2.54e-17!102;UBERON:0001049!1.08e-12!52;UBERON:0005068!1.08e-12!52;UBERON:0006241!1.08e-12!52;UBERON:0007135!1.08e-12!52;UBERON:0000955!6.05e-12!50;UBERON:0006238!6.05e-12!50;UBERON:0002616!1.10e-11!49;UBERON:0002346!1.25e-11!71;UBERON:0003075!1.25e-11!71;UBERON:0007284!1.25e-11!71;UBERON:0002020!6.78e-11!34;UBERON:0002791!6.88e-09!29;UBERON:0003528!6.88e-09!29;UBERON:0001893!6.88e-09!29;UBERON:0003080!2.07e-08!40;UBERON:0000033!2.65e-08!63;UBERON:0002780!2.97e-08!39;UBERON:0001890!2.97e-08!39;UBERON:0006240!2.97e-08!39 | |ontology_enrichment_uberon=UBERON:0000073!5.46e-21!75;UBERON:0001016!5.46e-21!75;UBERON:0001017!2.33e-20!73;UBERON:0005743!2.33e-20!73;UBERON:0004121!2.54e-17!102;UBERON:0000924!2.54e-17!102;UBERON:0006601!2.54e-17!102;UBERON:0001049!1.08e-12!52;UBERON:0005068!1.08e-12!52;UBERON:0006241!1.08e-12!52;UBERON:0007135!1.08e-12!52;UBERON:0000955!6.05e-12!50;UBERON:0006238!6.05e-12!50;UBERON:0002616!1.10e-11!49;UBERON:0002346!1.25e-11!71;UBERON:0003075!1.25e-11!71;UBERON:0007284!1.25e-11!71;UBERON:0002020!6.78e-11!34;UBERON:0002791!6.88e-09!29;UBERON:0003528!6.88e-09!29;UBERON:0001893!6.88e-09!29;UBERON:0003080!2.07e-08!40;UBERON:0000033!2.65e-08!63;UBERON:0002780!2.97e-08!39;UBERON:0001890!2.97e-08!39;UBERON:0006240!2.97e-08!39 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.46e-21,75;UBERON:0001017,2.33e-20,73;UBERON:0004121,8.48e-16,95;UBERON:0000924,8.48e-16,95;UBERON:0006601,8.48e-16,95;UBERON:0000073,9.55e-14,54;UBERON:0001049,1.08e-12,52;UBERON:0005068,1.08e-12,52;UBERON:0006241,1.08e-12,52;UBERON:0007135,1.08e-12,52;UBERON:0010314,4.56e-12,92;UBERON:0002020,6.78e-11,34;UBERON:0000955,1.86e-10,47;UBERON:0006238,1.86e-10,47;UBERON:0002346,2.31e-10,64;UBERON:0003075,2.31e-10,64;UBERON:0007284,2.31e-10,64;UBERON:0002616,3.32e-10,46;UBERON:0010371,1.18e-09,73;UBERON:0003528,6.88e-09,29;UBERON:0002791,6.88e-09,29;UBERON:0001893,6.88e-09,29;UBERON:0003080,2.07e-08,40;UBERON:0002780,2.97e-08,39;UBERON:0001890,2.97e-08,39;UBERON:0006240,2.97e-08,39 | |||
|phase1_expression=59.8956688171929,165.763318628697,164.254725419623,141.855715102903,184.830524350202,84.2753944997687,73.3543691469951,48.1629996437079,13.6565060487117,39.0887758957729,2.56826952338257,7.0199499915896,7.53283211697305,29.9851980297161,2.33176833270964,6.88415909125408,2.09868563438444,13.8803352757625,10.5578113876419,12.7316895539409,54.7678788572889,6.45391182805754,1.56719873483361,16.4792195477209,22.7115188256498,137.815671387605,98.6444971204281,86.8349067724133,40.4749883442076,24.9509828462331,52.7718615359625,33.6566256933605,29.5231098040594,0,23.3969811998532,13.6312409193964,34.9129599208651,148.997260542339,120.325643056665,52.3523743973798,852.935657644971,172.810507694487,62.1453251879877,26.1865381389201,23.7222019053664,31.0194011153242,116.576310307858,119.913836009246,86.3366698146474,97.2149495371417,70.6931429208081,43.1257693094915,65.2674337564594,34.0920206745332,16.8046899571232,98.7876234378036,100.859770858442,155.732971867788,72.8339259094552,107.385168792223,91.2717221048898,124.694787801441,69.3649940966689,170.530996424825,198.762138875962,204.618273104477,225.29928310984,475.278043682763,61.5916297112357,81.4085808140095,61.4148887146035,135.112915622999,126.336805424323,55.7333136428041,61.3411014516713,44.122501757281,112.318198619376,136.37007707498,148.230304592275,81.1100669540692,95.147149346506,75.0115253601734,142.662512489706,105.799370685956,142.25516868021,111.369605309046,97.2398579857873,77.542169463325,118.965849726432,59.4748178040402,559.148598705536,84.3215399441759,98.5958433876238,18.3499085156858,7.14754059192436,8.96053774194671,36.5155492342555,65.1043832248181,63.6475711277028,69.2545566040267,46.6191719460812,52.6138557398703,5.09610479413291,14.2213340630666,18.8347205679756,20.522149103483,22.7486000256652,35.6253704723467,10.8753911131812,90.6981469686079,56.7297018525264,55.4127170528097,68.4928026850494,61.3441147049174,54.6787488181027,126.797590651643,89.4845783198434,112.642899040611,28.307537662396,41.897614136379,31.3594956213759,18.4252596191384,41.0061874679869,46.2593659278244,61.9962252167827,38.5740153364973,118.736788385367,142.776849976431,97.9711450733329,67.4057877321702,95.6176259890929,61.4449781831907,77.5256468057553,97.6833047001863,115.530152775115,131.090940558748,62.0201725848426,36.9488702711976,34.1175723885461,29.0409761123334,22.7710775184731,44.8309103645272,41.0541655956196,32.5522406525144,33.2698480849993,29.3380419452306,39.4484260396458,32.855328083855,19.6166873568886,33.0935640293684,39.9409051852164,59.1828477554452,41.4290401346141,67.9091724718225,41.7737736908125,42.9914016327945,76.5412374171426,121.982907972375,125.600266732852,51.3671915888045,41.9801647366162,39.6136535214233,42.3773076697526,31.0887486160898,36.5613057543086,27.9040733700489,46.9478452449334,38.4157976387988,40.1526033788892,59.5927894607116,76.8532314494712,98.3925915372486,64.7672840108599,73.1424982244026,87.0600387055487,78.4133146330147,12.8863325363681,21.6849464664106,25.8078783147633,26.9394539358109,26.4178295710291,21.781820659321,18.4573776391242,23.0173007596197,43.1821446005506,27.5047254389098,25.1335208800269,25.8643413653496,27.4899362837959,46.7386092500195,25.5042898852139,31.6634624474444,51.2103332573321,24.3349331858722,40.574784842309,23.4199027022111,31.8082078954906,32.2624771495465,58.1143776171924,37.6405877347986,28.2597710114475,35.9085747012439,22.8268522857105,13.5144535630036,13.1694526725846,11.9176919563972,11.7658870405332,12.0588579876208,10.6942857748196,21.28951417136,14.4300351829781,9.33508804839477,41.6927798929328,23.4448797031157,14.6657706363843,20.4588891137161,13.0960111870996,19.7801843758981,67.0654080304775,30.887100118589,38.4597344403181,31.2330957826346,33.7953957535443,47.9067896283593,90.9326708184573,109.860243743941,62.8964224983702,65.7750128256861,100.297049485559,84.5534703933208,73.3911172930056,89.6824163205372,66.3481649332798,18.4927932498361,33.9317348383135,52.7039185442039,100.34411874237,148.624418598914,20.6558031174611,38.3755809350647,88.0267932171356,90.9722274211168,83.7997017180588,95.1095815851157,101.818994055654,76.1475867821959,116.180671380695,99.9515034056687,102.37953448815,84.5075062189352,43.2917259885219,52.1732218745058,36.6495658545546,87.4341651754438,31.8588332015911,43.4577338717417,31.1393263673694,28.2907619633847,47.8389066466852,51.6491048545798,49.101375701962,33.081569382453,37.4322247303957,26.8631244245444,43.2216295157495,35.0660847043835,59.5769310069129,26.4689808226026,37.3846596132161,40.9383736910341,39.1921916349425,50.656744198988,41.4663531917345,57.2394104335447,126.722722354404,102.526722298089,31.0945041257496,36.6047481530086,29.8709189387425,44.2093739723382,53.5981824574083,50.883678920969,37.3095470886209,122.009848722915,13.1570578214347,42.9284685363503,30.0015134338933,13.9392658183471,10.3887613067979,11.6676868335327,113.375612805901,164.303005027974,101.438780772447,28.6401185404534,29.1029114094645,41.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| ||
|short_description=p1@Rhob | |short_description=p1@Rhob | ||
}} | }} |
Latest revision as of 21:56, 26 September 2015
Short description: | p1@Rhob |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rhob_5end |
Coexpression cluster: | MCL_coexpression_mm9:137 |
Association with transcript: | -16bp_to_ENSMUST00000067384, NM_007483, uc007mzp.1_5end |
EntrezGene: | Rhob |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.51e-14 | 43 |
ectodermal cell | 4.78e-14 | 44 |
neurectodermal cell | 4.78e-14 | 44 |
neuron | 8.03e-11 | 33 |
neuronal stem cell | 8.03e-11 | 33 |
neuroblast | 8.03e-11 | 33 |
electrically signaling cell | 8.03e-11 | 33 |
electrically responsive cell | 4.09e-10 | 39 |
electrically active cell | 4.09e-10 | 39 |
embryonic cell | 1.17e-09 | 70 |
CNS neuron (sensu Vertebrata) | 6.47e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.47e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.46e-21 | 75 |
central nervous system | 2.33e-20 | 73 |
ectoderm-derived structure | 8.48e-16 | 95 |
ectoderm | 8.48e-16 | 95 |
presumptive ectoderm | 8.48e-16 | 95 |
regional part of nervous system | 9.55e-14 | 54 |
neural tube | 1.08e-12 | 52 |
neural rod | 1.08e-12 | 52 |
future spinal cord | 1.08e-12 | 52 |
neural keel | 1.08e-12 | 52 |
structure with developmental contribution from neural crest | 4.56e-12 | 92 |
gray matter | 6.78e-11 | 34 |
brain | 1.86e-10 | 47 |
future brain | 1.86e-10 | 47 |
neurectoderm | 2.31e-10 | 64 |
neural plate | 2.31e-10 | 64 |
presumptive neural plate | 2.31e-10 | 64 |
regional part of brain | 3.32e-10 | 46 |
ecto-epithelium | 1.18e-09 | 73 |
brain grey matter | 6.88e-09 | 29 |
regional part of telencephalon | 6.88e-09 | 29 |
telencephalon | 6.88e-09 | 29 |
anterior neural tube | 2.07e-08 | 40 |
regional part of forebrain | 2.97e-08 | 39 |
forebrain | 2.97e-08 | 39 |
future forebrain | 2.97e-08 | 39 |