FFCP PHASE1:Mm9::chr6:18464802..18464860,-: Difference between revisions
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{{FFCP|EntrezGene=30785|HGNC=|UniProt=G3X9L7,B9EJA2,D6RI37|association_with_transcript=0bp_to_ENSMUST00000140416,NM_080285,uc009bal.1,uc009bam.1,uc009ban.1_5end|description=CAGE_peak_1_at_Cttnbp2_5end|id=chr6:18464802..18464860,-|ontology_enrichment_celltype=CL:0000540!8.64e-12!33;CL:0000047!8.64e-12!33;CL:0000031!8.64e-12!33;CL:0000404!8.64e-12!33;CL:0000117!1.03e-10!23;CL:0000337!1.03e-10!23;CL:0000221!1.76e-08!44;CL:0000133!1.76e-08!44;CL:0002319!1.81e-08!43;CL:0000393!2.92e-07!39;CL:0000211!2.92e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,5.07e-12,33;CL:0000047,5.07e-12,33;CL:0000031,5.07e-12,33;CL:0000404,5.07e-12,33;CL:0000117,6.37e-11,23;CL:0000337,6.37e-11,23;CL:0000221,1.63e-08,44;CL:0000133,1.63e-08,44;CL:0002319,1.68e-08,43;CL:0000393,2.03e-07,39;CL:0000211,2.03e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.91e-25!102;UBERON:0000924!8.91e-25!102;UBERON:0006601!8.91e-25!102;UBERON:0001017!1.09e-22!73;UBERON:0005743!1.09e-22!73;UBERON:0000073!6.96e-22!75;UBERON:0001016!6.96e-22!75;UBERON:0002346!3.52e-20!71;UBERON:0003075!3.52e-20!71;UBERON:0007284!3.52e-20!71;UBERON:0001049!6.93e-20!52;UBERON:0005068!6.93e-20!52;UBERON:0006241!6.93e-20!52;UBERON:0007135!6.93e-20!52;UBERON:0000955!9.48e-20!50;UBERON:0006238!9.48e-20!50;UBERON:0002616!4.85e-19!49;UBERON:0000033!1.19e-18!63;UBERON:0002020!2.23e-17!34;UBERON:0003080!3.66e-16!40;UBERON:0002791!1.12e-15!29;UBERON:0003528!1.12e-15!29;UBERON:0001893!1.12e-15!29;UBERON:0002780!1.39e-15!39;UBERON:0001890!1.39e-15!39;UBERON:0006240!1.39e-15!39;UBERON:0003056!1.01e-14!49;UBERON:0000956!1.49e-12!21;UBERON:0001869!1.49e-12!21;UBERON:0000203!1.49e-12!21;UBERON:0000468!4.45e-12!333;UBERON:0002619!6.92e-10!17;UBERON:0000922!1.39e-09!328;UBERON:0002021!9.78e-08!10;UBERON:0000411!9.78e-08!10;UBERON:0001950!9.78e-08!10;UBERON:0000153!2.21e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.95e-23,95;UBERON:0000924,2.95e-23,95;UBERON:0006601,2.95e-23,95;UBERON:0001017,5.38e-23,73;UBERON:0001016,3.55e-22,75;UBERON:0000073,2.09e-21,54;UBERON:0010371,1.41e-20,73;UBERON:0001049,2.66e-20,52;UBERON:0005068,2.66e-20,52;UBERON:0006241,2.66e-20,52;UBERON:0007135,2.66e-20,52;UBERON:0002346,6.42e-19,64;UBERON:0003075,6.42e-19,64;UBERON:0007284,6.42e-19,64;UBERON:0000955,1.44e-18,47;UBERON:0006238,1.44e-18,47;UBERON:0002616,7.43e-18,46;UBERON:0002020,9.77e-18,34;UBERON:0003080,1.71e-16,40;UBERON:0003528,5.34e-16,29;UBERON:0002791,5.34e-16,29;UBERON:0001893,5.34e-16,29;UBERON:0002780,6.68e-16,39;UBERON:0001890,6.68e-16,39;UBERON:0006240,6.68e-16,39;UBERON:0003056,5.07e-15,49;UBERON:0010314,1.98e-14,92;UBERON:0000956,8.38e-13,21;UBERON:0001869,8.38e-13,21;UBERON:0000203,8.38e-13,21;UBERON:0002619,4.49e-10,17;UBERON:0002021,7.08e-08,10;UBERON:0000411,7.08e-08,10;UBERON:0001950,7.08e-08,10;UBERON:0000922,2.33e-07,320|phase1_expression=4.00372117761985,0.348975407639361,0.909998478779072,0.30246421130683,0,1.84667199103079,2.56973904655078,0,0.140788722151667,0,0,0,0,0,0.333109761815663,0.809901069559304,0,0,0.137114433605739,0,9.09963204616447,0,0,0.47997726838022,0.91763712426868,0.57423196411502,0,2.15471232685889,0.190023419456374,0,0.665191531965914,0,0,0,11.554064790051,9.64160943079256,19.3960888449251,0,0,0,0,0,0,0,0,0.183546752161682,1.56478268869608,5.01457859675027,3.73466510648602,7.19390626574849,1.25987779462826,1.43752564364972,0,0,0,0.514518872071894,0,0.515672092277442,13.7575193384526,10.0508286061686,13.9442908771359,0.677689064138264,0,0,0,0,0.599200221036809,1.53687322128622,63.6654219574053,63.8578088308897,47.1127913427096,7.7125765789027,9.05561017901615,16.7812394924487,16.3895755441184,16.5459381589804,11.0115880999389,21.9622221506523,20.1224558565679,13.9799464994005,13.7231465403614,17.1901412283731,8.65467296904281,10.1297269805702,11.4598685832608,17.9723437138937,17.3693450574906,15.4711540034999,1.13589289999776,3.40072020480535,12.4641730141721,0.860423876981386,0,0,0,0,1.54488862144927,0,0,0,5.63373679106722,0,0,0,0.216491041011214,0,0,1.7127581957859,0.776813650941515,46.610831666355,4.68410382268567,7.30717147949139,6.45723392316964,6.78251882486802,9.52468527799209,19.9809880214184,0,0.722996784599558,0,1.94120219936891,1.76673214768315,0.484875253135222,1.86391761218122,18.737971008739,16.3368431314495,1.53274233125155,0,0,0,21.2702707954848,35.6850470198529,20.356005042284,31.8098505951866,35.2887331115856,27.8435979709811,24.8229132493669,5.09196819251581,2.23932547098167,3.0326731012041,1.47309299120532,3.25301107406759,3.21862946206862,5.40186389416048,4.37043971723574,7.00775941258677,5.76511741281824,5.90320864726292,6.98499100995342,6.03590380211958,5.29497024469894,10.7330185740009,7.23345917010997,16.1267404550847,13.9300866608867,12.5527103208846,5.37392520409932,0,0,0,2.69263504296152,4.45599513964083,3.24111710629827,4.26140524053378,3.93528463494808,2.62254091908543,2.79040733700489,2.14618721119695,2.56883753207773,1.97471819896177,1.64167464079095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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=30785 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=G3X9L7,B9EJA2,D6RI37 | |||
|association_with_transcript=0bp_to_ENSMUST00000140416,NM_080285,uc009bal.1,uc009bam.1,uc009ban.1_5end | |||
|cluster_id=chr6:18464802..18464860,- | |||
|description=CAGE_peak_1_at_Cttnbp2_5end | |||
|id=chr6:18464802..18464860,- | |||
|ontology_enrichment_celltype=CL:0000540!8.64e-12!33;CL:0000047!8.64e-12!33;CL:0000031!8.64e-12!33;CL:0000404!8.64e-12!33;CL:0000117!1.03e-10!23;CL:0000337!1.03e-10!23;CL:0000221!1.76e-08!44;CL:0000133!1.76e-08!44;CL:0002319!1.81e-08!43;CL:0000393!2.92e-07!39;CL:0000211!2.92e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.07e-12,33;CL:0000047,5.07e-12,33;CL:0000031,5.07e-12,33;CL:0000404,5.07e-12,33;CL:0000117,6.37e-11,23;CL:0000337,6.37e-11,23;CL:0000221,1.63e-08,44;CL:0000133,1.63e-08,44;CL:0002319,1.68e-08,43;CL:0000393,2.03e-07,39;CL:0000211,2.03e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.91e-25!102;UBERON:0000924!8.91e-25!102;UBERON:0006601!8.91e-25!102;UBERON:0001017!1.09e-22!73;UBERON:0005743!1.09e-22!73;UBERON:0000073!6.96e-22!75;UBERON:0001016!6.96e-22!75;UBERON:0002346!3.52e-20!71;UBERON:0003075!3.52e-20!71;UBERON:0007284!3.52e-20!71;UBERON:0001049!6.93e-20!52;UBERON:0005068!6.93e-20!52;UBERON:0006241!6.93e-20!52;UBERON:0007135!6.93e-20!52;UBERON:0000955!9.48e-20!50;UBERON:0006238!9.48e-20!50;UBERON:0002616!4.85e-19!49;UBERON:0000033!1.19e-18!63;UBERON:0002020!2.23e-17!34;UBERON:0003080!3.66e-16!40;UBERON:0002791!1.12e-15!29;UBERON:0003528!1.12e-15!29;UBERON:0001893!1.12e-15!29;UBERON:0002780!1.39e-15!39;UBERON:0001890!1.39e-15!39;UBERON:0006240!1.39e-15!39;UBERON:0003056!1.01e-14!49;UBERON:0000956!1.49e-12!21;UBERON:0001869!1.49e-12!21;UBERON:0000203!1.49e-12!21;UBERON:0000468!4.45e-12!333;UBERON:0002619!6.92e-10!17;UBERON:0000922!1.39e-09!328;UBERON:0002021!9.78e-08!10;UBERON:0000411!9.78e-08!10;UBERON:0001950!9.78e-08!10;UBERON:0000153!2.21e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.95e-23,95;UBERON:0000924,2.95e-23,95;UBERON:0006601,2.95e-23,95;UBERON:0001017,5.38e-23,73;UBERON:0001016,3.55e-22,75;UBERON:0000073,2.09e-21,54;UBERON:0010371,1.41e-20,73;UBERON:0001049,2.66e-20,52;UBERON:0005068,2.66e-20,52;UBERON:0006241,2.66e-20,52;UBERON:0007135,2.66e-20,52;UBERON:0002346,6.42e-19,64;UBERON:0003075,6.42e-19,64;UBERON:0007284,6.42e-19,64;UBERON:0000955,1.44e-18,47;UBERON:0006238,1.44e-18,47;UBERON:0002616,7.43e-18,46;UBERON:0002020,9.77e-18,34;UBERON:0003080,1.71e-16,40;UBERON:0003528,5.34e-16,29;UBERON:0002791,5.34e-16,29;UBERON:0001893,5.34e-16,29;UBERON:0002780,6.68e-16,39;UBERON:0001890,6.68e-16,39;UBERON:0006240,6.68e-16,39;UBERON:0003056,5.07e-15,49;UBERON:0010314,1.98e-14,92;UBERON:0000956,8.38e-13,21;UBERON:0001869,8.38e-13,21;UBERON:0000203,8.38e-13,21;UBERON:0002619,4.49e-10,17;UBERON:0002021,7.08e-08,10;UBERON:0000411,7.08e-08,10;UBERON:0001950,7.08e-08,10;UBERON:0000922,2.33e-07,320 | |||
|phase1_expression=4.00372117761985,0.348975407639361,0.909998478779072,0.30246421130683,0,1.84667199103079,2.56973904655078,0,0.140788722151667,0,0,0,0,0,0.333109761815663,0.809901069559304,0,0,0.137114433605739,0,9.09963204616447,0,0,0.47997726838022,0.91763712426868,0.57423196411502,0,2.15471232685889,0.190023419456374,0,0.665191531965914,0,0,0,11.554064790051,9.64160943079256,19.3960888449251,0,0,0,0,0,0,0,0,0.183546752161682,1.56478268869608,5.01457859675027,3.73466510648602,7.19390626574849,1.25987779462826,1.43752564364972,0,0,0,0.514518872071894,0,0.515672092277442,13.7575193384526,10.0508286061686,13.9442908771359,0.677689064138264,0,0,0,0,0.599200221036809,1.53687322128622,63.6654219574053,63.8578088308897,47.1127913427096,7.7125765789027,9.05561017901615,16.7812394924487,16.3895755441184,16.5459381589804,11.0115880999389,21.9622221506523,20.1224558565679,13.9799464994005,13.7231465403614,17.1901412283731,8.65467296904281,10.1297269805702,11.4598685832608,17.9723437138937,17.3693450574906,15.4711540034999,1.13589289999776,3.40072020480535,12.4641730141721,0.860423876981386,0,0,0,0,1.54488862144927,0,0,0,5.63373679106722,0,0,0,0.216491041011214,0,0,1.7127581957859,0.776813650941515,46.610831666355,4.68410382268567,7.30717147949139,6.45723392316964,6.78251882486802,9.52468527799209,19.9809880214184,0,0.722996784599558,0,1.94120219936891,1.76673214768315,0.484875253135222,1.86391761218122,18.737971008739,16.3368431314495,1.53274233125155,0,0,0,21.2702707954848,35.6850470198529,20.356005042284,31.8098505951866,35.2887331115856,27.8435979709811,24.8229132493669,5.09196819251581,2.23932547098167,3.0326731012041,1.47309299120532,3.25301107406759,3.21862946206862,5.40186389416048,4.37043971723574,7.00775941258677,5.76511741281824,5.90320864726292,6.98499100995342,6.03590380211958,5.29497024469894,10.7330185740009,7.23345917010997,16.1267404550847,13.9300866608867,12.5527103208846,5.37392520409932,0,0,0,2.69263504296152,4.45599513964083,3.24111710629827,4.26140524053378,3.93528463494808,2.62254091908543,2.79040733700489,2.14618721119695,2.56883753207773,1.97471819896177,1.64167464079095,1.4592385718254,1.31579988682799,1.75640092232841,0.939444931322602,63.0869845692382,57.8323921571578,0.660837565967596,2.3800550999719,8.53153002140936,4.64473343720877,6.31450560478257,3.83198696784351,5.78182913996663,5.70676878337677,3.32170343081158,2.9645811850322,9.55073793441024,6.96347652144028,8.77338392036041,0,2.59365659849633,3.18626037206988,3.22435431620239,8.79713547094912,7.88954149711563,7.33144780243131,8.72786192254316,11.5724102819026,11.4458132194906,9.15182917473533,10.6759134932135,7.52722699922983,0,1.83529616287703,0.393117990226406,0.674586337154561,1.21716072833102,1.20588579876208,0.50925170356284,1.72617682470486,0.162135226775035,0.823684239564244,2.87536413054709,1.11642284300551,1.24815069245824,0.252578877947112,0,0.482443521363367,2.95605104266567,4.9267767060326,7.98528384565927,7.1292936025579,9.38760993154008,11.8929442783689,10.7119638398706,5.07347484430277,6.9359463406724,4.87222317227305,7.17546458958692,2.62181303545181,4.83517949224508,5.35201516751593,0,0,1.96705709207614,1.65562047782839,17.6605648986571,14.0654023910644,0,2.27223834483936,5.67914794949262,4.29482618726302,7.32439552291516,8.60287672629187,7.5751549188014,8.20921939287614,19.4309136803949,14.028281179743,12.2539211163422,51.0900893110673,3.40656204499845,7.47875535402472,9.93610452056814,4.45419332025846,3.98235415019888,0.485561272309963,1.51161778482376,1.69744571780308,1.77181135728464,2.15204603560749,3.10113951801865,3.99887102425256,3.92147116223193,3.79244109522979,1.05418608574999,2.06271086496374,10.2131881726136,7.0223826672211,2.19909762430683,4.28674070063185,7.80297028026004,6.42127743367454,6.41741180348272,1.8267896946876,4.22409074514679,0.847328283455281,1.32317038832977,24.732937941222,11.4639742954093,13.6307210337632,16.592755816436,21.1741760671129,3.78925087618806,15.2048747648618,0.683483523191411,5.36605856704379,2.77791791054568,1.31857919903284,0.683471138605126,1.14389086603261,0,0.139951452323658,0,0.954670618015114,5.06137589729817,6.70954241518601,5.07625101862466,5.01811910434725,3.9305261474312,3.77620169877498,3.55409859618945,2.87931536182433,3.75883422546199,11.8054469486516,1.12738587736838,4.63501292736334,2.64733584731356,4.4723773319131,1.6790777052105,1.520605129417,1.29092962510329,1.3020438484395,1.25831213310853,0.483168241652012,0.576060012515731,0,2.02725215290164,0.924398614483445,0.77952493786677,0.895133478337407,0.39736270956253,0.360586348559907,0.738447635872886,0.201932899896295,0.15241361331,0.201652370273681,0.292373642219257,0.0962118416403295,0.233753804363138,6.80191150845634,1.55390167361845,0.717710852875806,0.671538465456314,0.965947970160952,1.50145980360946,5.31139710375069,1.71494703263253,2.00628841614145,37.8383734553435,37.2863441570813,40.1026859407578,32.6521046453006,37.6795385873853,40.7912704590438,34.4261475118221,41.4295506966283,44.4079560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| |||
|short_description=p1@Cttnbp2 | |||
}} |
Latest revision as of 23:46, 26 September 2015
Short description: | p1@Cttnbp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cttnbp2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000140416, NM_080285, uc009bal.1, uc009bam.1, uc009ban.1_5end |
EntrezGene: | Cttnbp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.07e-12 | 33 |
neuronal stem cell | 5.07e-12 | 33 |
neuroblast | 5.07e-12 | 33 |
electrically signaling cell | 5.07e-12 | 33 |
CNS neuron (sensu Vertebrata) | 6.37e-11 | 23 |
neuroblast (sensu Vertebrata) | 6.37e-11 | 23 |
ectodermal cell | 1.63e-08 | 44 |
neurectodermal cell | 1.63e-08 | 44 |
neural cell | 1.68e-08 | 43 |
electrically responsive cell | 2.03e-07 | 39 |
electrically active cell | 2.03e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.95e-23 | 95 |
ectoderm | 2.95e-23 | 95 |
presumptive ectoderm | 2.95e-23 | 95 |
central nervous system | 5.38e-23 | 73 |
nervous system | 3.55e-22 | 75 |
regional part of nervous system | 2.09e-21 | 54 |
ecto-epithelium | 1.41e-20 | 73 |
neural tube | 2.66e-20 | 52 |
neural rod | 2.66e-20 | 52 |
future spinal cord | 2.66e-20 | 52 |
neural keel | 2.66e-20 | 52 |
neurectoderm | 6.42e-19 | 64 |
neural plate | 6.42e-19 | 64 |
presumptive neural plate | 6.42e-19 | 64 |
brain | 1.44e-18 | 47 |
future brain | 1.44e-18 | 47 |
regional part of brain | 7.43e-18 | 46 |
gray matter | 9.77e-18 | 34 |
anterior neural tube | 1.71e-16 | 40 |
brain grey matter | 5.34e-16 | 29 |
regional part of telencephalon | 5.34e-16 | 29 |
telencephalon | 5.34e-16 | 29 |
regional part of forebrain | 6.68e-16 | 39 |
forebrain | 6.68e-16 | 39 |
future forebrain | 6.68e-16 | 39 |
pre-chordal neural plate | 5.07e-15 | 49 |
structure with developmental contribution from neural crest | 1.98e-14 | 92 |
cerebral cortex | 8.38e-13 | 21 |
cerebral hemisphere | 8.38e-13 | 21 |
pallium | 8.38e-13 | 21 |
regional part of cerebral cortex | 4.49e-10 | 17 |
occipital lobe | 7.08e-08 | 10 |
visual cortex | 7.08e-08 | 10 |
neocortex | 7.08e-08 | 10 |
embryo | 2.33e-07 | 320 |