FFCP PHASE1:Mm9::chr15:79635147..79635162,-: Difference between revisions
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{{FFCP|EntrezGene=73340|HGNC=|MCL_coexpression_id=2|UniProt=Q6PD36,Q3UH69|association_with_transcript=-8bp_to_NM_030689,uc007wul.1_5end|description=CAGE_peak_1_at_Nptxr_5end|id=chr15:79635147..79635162,-|ontology_enrichment_celltype=CL:0000117!2.12e-11!23;CL:0000337!2.12e-11!23;CL:0000221!4.84e-09!44;CL:0000133!4.84e-09!44;CL:0002319!5.82e-09!43;CL:0000055!1.23e-08!50;CL:0000393!4.28e-08!39;CL:0000211!4.28e-08!39;CL:0000540!5.04e-08!33;CL:0000047!5.04e-08!33;CL:0000031!5.04e-08!33;CL:0000404!5.04e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.47e-11,23;CL:0000337,1.47e-11,23;CL:0000221,3.63e-09,44;CL:0000133,3.63e-09,44;CL:0002319,4.38e-09,43;CL:0000540,3.92e-08,33;CL:0000047,3.92e-08,33;CL:0000031,3.92e-08,33;CL:0000404,3.92e-08,33;CL:0000393,3.93e-08,39;CL:0000211,3.93e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!4.23e-25!71;UBERON:0003075!4.23e-25!71;UBERON:0007284!4.23e-25!71;UBERON:0000073!9.18e-25!75;UBERON:0001016!9.18e-25!75;UBERON:0001049!9.69e-25!52;UBERON:0005068!9.69e-25!52;UBERON:0006241!9.69e-25!52;UBERON:0007135!9.69e-25!52;UBERON:0001017!1.31e-24!73;UBERON:0005743!1.31e-24!73;UBERON:0000955!1.35e-23!50;UBERON:0006238!1.35e-23!50;UBERON:0002616!5.34e-23!49;UBERON:0000033!2.36e-22!63;UBERON:0004121!5.86e-22!102;UBERON:0000924!5.86e-22!102;UBERON:0006601!5.86e-22!102;UBERON:0003056!6.82e-19!49;UBERON:0003080!1.03e-18!40;UBERON:0002020!1.13e-18!34;UBERON:0002780!3.68e-18!39;UBERON:0001890!3.68e-18!39;UBERON:0006240!3.68e-18!39;UBERON:0002791!1.05e-15!29;UBERON:0003528!1.05e-15!29;UBERON:0001893!1.05e-15!29;UBERON:0007811!3.87e-12!86;UBERON:0000956!1.45e-11!21;UBERON:0001869!1.45e-11!21;UBERON:0000203!1.45e-11!21;UBERON:0000153!3.57e-11!94;UBERON:0002619!3.36e-10!17;UBERON:0002021!4.13e-08!10;UBERON:0000411!4.13e-08!10;UBERON:0001950!4.13e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.35e-26,54;UBERON:0002346,1.31e-25,64;UBERON:0003075,1.31e-25,64;UBERON:0007284,1.31e-25,64;UBERON:0001016,3.80e-25,75;UBERON:0001049,4.06e-25,52;UBERON:0005068,4.06e-25,52;UBERON:0006241,4.06e-25,52;UBERON:0007135,4.06e-25,52;UBERON:0001017,5.47e-25,73;UBERON:0010371,4.41e-22,73;UBERON:0000955,4.84e-22,47;UBERON:0006238,4.84e-22,47;UBERON:0002616,1.91e-21,46;UBERON:0004121,3.42e-21,95;UBERON:0000924,3.42e-21,95;UBERON:0006601,3.42e-21,95;UBERON:0003056,3.57e-19,49;UBERON:0003080,5.44e-19,40;UBERON:0002020,5.98e-19,34;UBERON:0002780,1.98e-18,39;UBERON:0001890,1.98e-18,39;UBERON:0006240,1.98e-18,39;UBERON:0010314,1.30e-17,92;UBERON:0003528,6.18e-16,29;UBERON:0002791,6.18e-16,29;UBERON:0001893,6.18e-16,29;UBERON:0000956,9.96e-12,21;UBERON:0001869,9.96e-12,21;UBERON:0000203,9.96e-12,21;UBERON:0002619,2.44e-10,17;UBERON:0002021,3.23e-08,10;UBERON:0000411,3.23e-08,10;UBERON:0001950,3.23e-08,10|phase1_expression=4.16387002472464,0,0,0,0,0.671517087647559,0,0,0.84473233291,1.17032263160997,0,0,0,0.0874204024189974,0.666219523631325,0,0,0.157731082679119,0.137114433605739,0.42438965179803,28.4044589104573,0.695036658406197,1.04479915655574,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0.288851619751275,0.831173226792462,0.408338712524738,0,0.7813353445238,0,0,0,0,17.3737608806297,16.3216859263418,8.25960384727567,30.5132624295735,3.05235218932625,27.6804590245434,9.13820525649132,6.29938897314131,4.31257693094915,0,0,0,2.57259436035947,3.15186783932632,0.515672092277442,31.7636843549569,31.739458756322,38.6637156138769,19.6529828600097,16.0073063300005,0.899899717281399,0,1.4209602298922,1.79760066311043,3.84218305321555,9.53944433237994,9.99043943654511,7.57169860864975,65.6997264128748,59.1927689750324,9.18680994112155,4.50473713785711,9.19218786610021,49.5521464497249,85.039767164735,61.4426133024974,37.4557057153751,33.1185269840723,27.6084086395083,44.669279840221,57.4017862232314,109.403545408196,77.7819465650483,61.6469377860116,39.8894814066143,3.3319525066601,7.55715601067855,4.05810284182349,0.860423876981386,0,0,0,0,7.8648875273781,5.79463096765396,4.1565760736459,3.88673531961374,5.0703631119605,12.8326477414318,2.54805239706646,0,2.38140145112336,2.02687892380079,1.51657333504435,4.5673551887624,0.258937883647172,4.60170631100957,2.94925055502431,4.26251669636998,7.37969591219387,3.91878865436819,5.05631440683531,3.64433114856059,0.494389935468748,3.61498392299779,1.76922110389975,5.82360659810673,4.19598885074748,1.45462575940567,3.72783522436244,60.3128441843787,88.386510275278,0.255457055208591,0.359445373517761,0,0.254140454146129,44.0384479850179,54.4425717354165,27.3926487606044,250.48084539707,289.214182240604,52.5703752735687,101.076306891213,10.9986512958342,2.98576729464223,2.77995034277042,5.26104639716185,1.30120442962704,4.13823787980251,3.60124259610698,5.57607825992146,9.79725587779121,7.17436833595159,8.71426038405478,9.05461797586555,1.29340795759705,1.89106080167819,1.23165786914764,4.82230611340665,2.78047249225598,6.96504333044333,5.76189981942242,2.38841120182192,0,0.257347907114715,0,0.414251545071004,1.6416824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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=73340 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q6PD36,Q3UH69 | |||
|association_with_transcript=-8bp_to_NM_030689,uc007wul.1_5end | |||
|cluster_id=chr15:79635147..79635162,- | |||
|description=CAGE_peak_1_at_Nptxr_5end | |||
|id=chr15:79635147..79635162,- | |||
|ontology_enrichment_celltype=CL:0000117!2.12e-11!23;CL:0000337!2.12e-11!23;CL:0000221!4.84e-09!44;CL:0000133!4.84e-09!44;CL:0002319!5.82e-09!43;CL:0000055!1.23e-08!50;CL:0000393!4.28e-08!39;CL:0000211!4.28e-08!39;CL:0000540!5.04e-08!33;CL:0000047!5.04e-08!33;CL:0000031!5.04e-08!33;CL:0000404!5.04e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.47e-11,23;CL:0000337,1.47e-11,23;CL:0000221,3.63e-09,44;CL:0000133,3.63e-09,44;CL:0002319,4.38e-09,43;CL:0000540,3.92e-08,33;CL:0000047,3.92e-08,33;CL:0000031,3.92e-08,33;CL:0000404,3.92e-08,33;CL:0000393,3.93e-08,39;CL:0000211,3.93e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.23e-25!71;UBERON:0003075!4.23e-25!71;UBERON:0007284!4.23e-25!71;UBERON:0000073!9.18e-25!75;UBERON:0001016!9.18e-25!75;UBERON:0001049!9.69e-25!52;UBERON:0005068!9.69e-25!52;UBERON:0006241!9.69e-25!52;UBERON:0007135!9.69e-25!52;UBERON:0001017!1.31e-24!73;UBERON:0005743!1.31e-24!73;UBERON:0000955!1.35e-23!50;UBERON:0006238!1.35e-23!50;UBERON:0002616!5.34e-23!49;UBERON:0000033!2.36e-22!63;UBERON:0004121!5.86e-22!102;UBERON:0000924!5.86e-22!102;UBERON:0006601!5.86e-22!102;UBERON:0003056!6.82e-19!49;UBERON:0003080!1.03e-18!40;UBERON:0002020!1.13e-18!34;UBERON:0002780!3.68e-18!39;UBERON:0001890!3.68e-18!39;UBERON:0006240!3.68e-18!39;UBERON:0002791!1.05e-15!29;UBERON:0003528!1.05e-15!29;UBERON:0001893!1.05e-15!29;UBERON:0007811!3.87e-12!86;UBERON:0000956!1.45e-11!21;UBERON:0001869!1.45e-11!21;UBERON:0000203!1.45e-11!21;UBERON:0000153!3.57e-11!94;UBERON:0002619!3.36e-10!17;UBERON:0002021!4.13e-08!10;UBERON:0000411!4.13e-08!10;UBERON:0001950!4.13e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.35e-26,54;UBERON:0002346,1.31e-25,64;UBERON:0003075,1.31e-25,64;UBERON:0007284,1.31e-25,64;UBERON:0001016,3.80e-25,75;UBERON:0001049,4.06e-25,52;UBERON:0005068,4.06e-25,52;UBERON:0006241,4.06e-25,52;UBERON:0007135,4.06e-25,52;UBERON:0001017,5.47e-25,73;UBERON:0010371,4.41e-22,73;UBERON:0000955,4.84e-22,47;UBERON:0006238,4.84e-22,47;UBERON:0002616,1.91e-21,46;UBERON:0004121,3.42e-21,95;UBERON:0000924,3.42e-21,95;UBERON:0006601,3.42e-21,95;UBERON:0003056,3.57e-19,49;UBERON:0003080,5.44e-19,40;UBERON:0002020,5.98e-19,34;UBERON:0002780,1.98e-18,39;UBERON:0001890,1.98e-18,39;UBERON:0006240,1.98e-18,39;UBERON:0010314,1.30e-17,92;UBERON:0003528,6.18e-16,29;UBERON:0002791,6.18e-16,29;UBERON:0001893,6.18e-16,29;UBERON:0000956,9.96e-12,21;UBERON:0001869,9.96e-12,21;UBERON:0000203,9.96e-12,21;UBERON:0002619,2.44e-10,17;UBERON:0002021,3.23e-08,10;UBERON:0000411,3.23e-08,10;UBERON:0001950,3.23e-08,10 | |||
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| |||
|short_description=p1@Nptxr | |||
}} |
Latest revision as of 03:14, 27 September 2015
Short description: | p1@Nptxr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nptxr_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -8bp_to_NM_030689, uc007wul.1_5end |
EntrezGene: | Nptxr |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.47e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.47e-11 | 23 |
ectodermal cell | 3.63e-09 | 44 |
neurectodermal cell | 3.63e-09 | 44 |
neural cell | 4.38e-09 | 43 |
neuron | 3.92e-08 | 33 |
neuronal stem cell | 3.92e-08 | 33 |
neuroblast | 3.92e-08 | 33 |
electrically signaling cell | 3.92e-08 | 33 |
electrically responsive cell | 3.93e-08 | 39 |
electrically active cell | 3.93e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.35e-26 | 54 |
neurectoderm | 1.31e-25 | 64 |
neural plate | 1.31e-25 | 64 |
presumptive neural plate | 1.31e-25 | 64 |
nervous system | 3.80e-25 | 75 |
neural tube | 4.06e-25 | 52 |
neural rod | 4.06e-25 | 52 |
future spinal cord | 4.06e-25 | 52 |
neural keel | 4.06e-25 | 52 |
central nervous system | 5.47e-25 | 73 |
ecto-epithelium | 4.41e-22 | 73 |
brain | 4.84e-22 | 47 |
future brain | 4.84e-22 | 47 |
regional part of brain | 1.91e-21 | 46 |
ectoderm-derived structure | 3.42e-21 | 95 |
ectoderm | 3.42e-21 | 95 |
presumptive ectoderm | 3.42e-21 | 95 |
pre-chordal neural plate | 3.57e-19 | 49 |
anterior neural tube | 5.44e-19 | 40 |
gray matter | 5.98e-19 | 34 |
regional part of forebrain | 1.98e-18 | 39 |
forebrain | 1.98e-18 | 39 |
future forebrain | 1.98e-18 | 39 |
structure with developmental contribution from neural crest | 1.30e-17 | 92 |
brain grey matter | 6.18e-16 | 29 |
regional part of telencephalon | 6.18e-16 | 29 |
telencephalon | 6.18e-16 | 29 |
cerebral cortex | 9.96e-12 | 21 |
cerebral hemisphere | 9.96e-12 | 21 |
pallium | 9.96e-12 | 21 |
regional part of cerebral cortex | 2.44e-10 | 17 |
occipital lobe | 3.23e-08 | 10 |
visual cortex | 3.23e-08 | 10 |
neocortex | 3.23e-08 | 10 |