FFCP PHASE1:Mm9::chr4:86221624..86221635,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68441 | |EntrezGene=68441 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q80X95 | |UniProt=Q80X95 | ||
|association_with_transcript=47bp_to_ENSMUST00000091064,NM_178376,uc008tlw.2_5end | |association_with_transcript=47bp_to_ENSMUST00000091064,NM_178376,uc008tlw.2_5end | ||
|cluster_id=chr4:86221624..86221635,+ | |||
|description=CAGE_peak_3_at_Rraga_5end | |description=CAGE_peak_3_at_Rraga_5end | ||
|id=chr4:86221624..86221635,+ | |id=chr4:86221624..86221635,+ | ||
|ontology_enrichment_celltype=CL:0000055!8.45e-12!50;CL:0000393!2.36e-11!39;CL:0000211!2.36e-11!39;CL:0000221!3.59e-11!44;CL:0000133!3.59e-11!44;CL:0002319!7.98e-11!43;CL:0000540!5.91e-10!33;CL:0000047!5.91e-10!33;CL:0000031!5.91e-10!33;CL:0000404!5.91e-10!33;CL:0002321!1.47e-08!70;CL:0000220!1.47e-08!70;CL:0000723!3.76e-07!91;CL:0000048!3.76e-07!91 | |ontology_enrichment_celltype=CL:0000055!8.45e-12!50;CL:0000393!2.36e-11!39;CL:0000211!2.36e-11!39;CL:0000221!3.59e-11!44;CL:0000133!3.59e-11!44;CL:0002319!7.98e-11!43;CL:0000540!5.91e-10!33;CL:0000047!5.91e-10!33;CL:0000031!5.91e-10!33;CL:0000404!5.91e-10!33;CL:0002321!1.47e-08!70;CL:0000220!1.47e-08!70;CL:0000723!3.76e-07!91;CL:0000048!3.76e-07!91 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.35e-11,39;CL:0000211,2.35e-11,39;CL:0000221,3.58e-11,44;CL:0000133,3.58e-11,44;CL:0002319,7.98e-11,43;CL:0000540,5.91e-10,33;CL:0000047,5.91e-10,33;CL:0000031,5.91e-10,33;CL:0000404,5.91e-10,33;CL:0002321,1.44e-08,70;CL:0000723,3.70e-07,91;CL:0000048,3.70e-07,91 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.49e-19!73;UBERON:0005743!8.49e-19!73;UBERON:0000073!9.99e-19!75;UBERON:0001016!9.99e-19!75;UBERON:0002346!6.29e-15!71;UBERON:0003075!6.29e-15!71;UBERON:0007284!6.29e-15!71;UBERON:0004121!2.01e-14!102;UBERON:0000924!2.01e-14!102;UBERON:0006601!2.01e-14!102;UBERON:0001049!3.62e-12!52;UBERON:0005068!3.62e-12!52;UBERON:0006241!3.62e-12!52;UBERON:0007135!3.62e-12!52;UBERON:0000955!1.44e-11!50;UBERON:0006238!1.44e-11!50;UBERON:0002616!3.10e-11!49;UBERON:0000033!2.32e-10!63;UBERON:0000025!4.00e-10!114;UBERON:0004111!5.80e-09!122;UBERON:0003080!6.14e-09!40;UBERON:0003056!1.21e-08!49;UBERON:0002780!1.38e-08!39;UBERON:0001890!1.38e-08!39;UBERON:0006240!1.38e-08!39;UBERON:0002020!3.73e-08!34;UBERON:0002100!5.26e-07!98;UBERON:0000475!5.96e-07!200;UBERON:0002791!7.19e-07!29;UBERON:0003528!7.19e-07!29;UBERON:0001893!7.19e-07!29;UBERON:0000480!7.24e-07!308;UBERON:0000467!7.24e-07!308 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.49e-19,73;UBERON:0001016,9.98e-19,75;UBERON:0002346,2.07e-13,64;UBERON:0003075,2.07e-13,64;UBERON:0007284,2.07e-13,64;UBERON:0004121,8.01e-13,95;UBERON:0000924,8.01e-13,95;UBERON:0006601,8.01e-13,95;UBERON:0000073,1.21e-12,54;UBERON:0001049,3.62e-12,52;UBERON:0005068,3.62e-12,52;UBERON:0006241,3.62e-12,52;UBERON:0007135,3.62e-12,52;UBERON:0010314,8.71e-11,92;UBERON:0000955,9.41e-11,47;UBERON:0006238,9.41e-11,47;UBERON:0002616,2.00e-10,46;UBERON:0010371,3.36e-10,73;UBERON:0000025,4.00e-10,114;UBERON:0004111,5.80e-09,122;UBERON:0003080,6.14e-09,40;UBERON:0003056,1.21e-08,49;UBERON:0002780,1.38e-08,39;UBERON:0001890,1.38e-08,39;UBERON:0006240,1.38e-08,39;UBERON:0002020,3.73e-08,34;UBERON:0003528,7.18e-07,29;UBERON:0002791,7.18e-07,29;UBERON:0001893,7.18e-07,29 | |||
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| ||
|short_description=p3@Rraga | |short_description=p3@Rraga | ||
}} | }} |
Latest revision as of 06:19, 27 September 2015
Short description: | p3@Rraga |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rraga_5end |
Coexpression cluster: | NA |
Association with transcript: | 47bp_to_ENSMUST00000091064, NM_178376, uc008tlw.2_5end |
EntrezGene: | Rraga |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.35e-11 | 39 |
electrically active cell | 2.35e-11 | 39 |
ectodermal cell | 3.58e-11 | 44 |
neurectodermal cell | 3.58e-11 | 44 |
neural cell | 7.98e-11 | 43 |
neuron | 5.91e-10 | 33 |
neuronal stem cell | 5.91e-10 | 33 |
neuroblast | 5.91e-10 | 33 |
electrically signaling cell | 5.91e-10 | 33 |
embryonic cell | 1.44e-08 | 70 |
somatic stem cell | 3.70e-07 | 91 |
multi fate stem cell | 3.70e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.49e-19 | 73 |
nervous system | 9.98e-19 | 75 |
neurectoderm | 2.07e-13 | 64 |
neural plate | 2.07e-13 | 64 |
presumptive neural plate | 2.07e-13 | 64 |
ectoderm-derived structure | 8.01e-13 | 95 |
ectoderm | 8.01e-13 | 95 |
presumptive ectoderm | 8.01e-13 | 95 |
regional part of nervous system | 1.21e-12 | 54 |
neural tube | 3.62e-12 | 52 |
neural rod | 3.62e-12 | 52 |
future spinal cord | 3.62e-12 | 52 |
neural keel | 3.62e-12 | 52 |
structure with developmental contribution from neural crest | 8.71e-11 | 92 |
brain | 9.41e-11 | 47 |
future brain | 9.41e-11 | 47 |
regional part of brain | 2.00e-10 | 46 |
ecto-epithelium | 3.36e-10 | 73 |
tube | 4.00e-10 | 114 |
anatomical conduit | 5.80e-09 | 122 |
anterior neural tube | 6.14e-09 | 40 |
pre-chordal neural plate | 1.21e-08 | 49 |
regional part of forebrain | 1.38e-08 | 39 |
forebrain | 1.38e-08 | 39 |
future forebrain | 1.38e-08 | 39 |
gray matter | 3.73e-08 | 34 |
brain grey matter | 7.18e-07 | 29 |
regional part of telencephalon | 7.18e-07 | 29 |
telencephalon | 7.18e-07 | 29 |