FFCP PHASE1:Mm9::chr3:107698767..107698819,+: Difference between revisions
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{{FFCP|EntrezGene=14866|HGNC=|MCL_coexpression_id=0|UniProt=P48774|association_with_transcript=0bp_to_NM_010360,uc008qxs.1_5end|description=CAGE_peak_1_at_Gstm5_5end|id=chr3:107698767..107698819,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.36e-13!63;UBERON:0002346!4.95e-12!71;UBERON:0003075!4.95e-12!71;UBERON:0007284!4.95e-12!71;UBERON:0003056!7.82e-11!49;UBERON:0001049!3.80e-10!52;UBERON:0005068!3.80e-10!52;UBERON:0006241!3.80e-10!52;UBERON:0007135!3.80e-10!52;UBERON:0000955!1.01e-09!50;UBERON:0006238!1.01e-09!50;UBERON:0002616!1.10e-09!49;UBERON:0001017!1.09e-08!73;UBERON:0005743!1.09e-08!73;UBERON:0000025!1.14e-08!114;UBERON:0004111!1.36e-08!122;UBERON:0004121!1.43e-08!102;UBERON:0000924!1.43e-08!102;UBERON:0006601!1.43e-08!102;UBERON:0000073!4.05e-08!75;UBERON:0001016!4.05e-08!75;UBERON:0003103!8.23e-08!43;UBERON:0003080!1.05e-07!40;UBERON:0000468!1.19e-07!333;UBERON:0002780!3.19e-07!39;UBERON:0001890!3.19e-07!39;UBERON:0006240!3.19e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0010314,7.24e-18,92;UBERON:0002346,6.15e-13,64;UBERON:0003075,6.15e-13,64;UBERON:0007284,6.15e-13,64;UBERON:0010371,4.94e-11,73;UBERON:0000073,6.28e-11,54;UBERON:0003056,7.79e-11,49;UBERON:0001049,3.78e-10,52;UBERON:0005068,3.78e-10,52;UBERON:0006241,3.78e-10,52;UBERON:0007135,3.78e-10,52;UBERON:0004121,6.35e-09,95;UBERON:0000924,6.35e-09,95;UBERON:0006601,6.35e-09,95;UBERON:0001017,1.08e-08,73;UBERON:0000025,1.14e-08,114;UBERON:0004111,1.36e-08,122;UBERON:0000955,1.75e-08,47;UBERON:0006238,1.75e-08,47;UBERON:0002616,1.92e-08,46;UBERON:0001016,4.04e-08,75;UBERON:0003103,8.21e-08,43;UBERON:0003080,1.04e-07,40;UBERON:0002780,3.18e-07,39;UBERON:0001890,3.18e-07,39;UBERON:0006240,3.18e-07,39|phase1_expression=49.3258449082765,8.72438519098403,7.27998783023258,6.0492842261366,6.01074875935617,9.06548068324205,14.0167584357315,0.258246646883153,0,0,0,0,0,0,24.650122374359,36.8504986649483,48.9693314689703,0.946386496074713,1.23402990245165,2.97072756258621,324.695281796784,0.198581902401771,0,16.1592347021341,10.3234176480227,5.7423196411502,12.0613358924541,11.4199753323521,11.7814520062952,9.07308467135751,15.299405235216,8.89042942843484,11.6862309641068,0,23.9746844393558,24.7689621584154,21.4377824075488,0.837063261473815,0,1.0470474879476,0,0,0.971020706062307,45.8264417431101,40.7535263502449,30.6523076110008,21.9069576417451,31.8316728315452,39.3238267094705,51.5239232546851,33.0367955035856,28.7505128729943,0,0,0,35.7590616089966,51.862552628915,51.0515371354668,26.3011399117477,20.6306481916093,22.1840991227163,22.0248945844936,10.6715375533337,5.84934816232909,8.89979726310277,4.9733608046227,15.2796056364386,14.6002956022191,19.9084055632277,16.0657066614712,17.2466468308133,39.1341848633211,46.8241306817421,20.3334726696824,15.7186572469908,13.7882817991503,37.4393995397922,47.8827517819454,59.7529414366787,28.4874381497219,31.6547246864337,34.3802824567462,75.3794097303729,87.2282045549104,55.0073691996516,35.0608016713665,40.5759290277443,25.5367240780662,8.85996461998253,24.6363285948121,22.8992946074325,18.9293252935905,15.6393406752783,19.9690180905992,16.2444104361917,13.8888335000174,73.4524317289062,19.9403477416328,29.615604524727,18.3736578745377,47.7459193042947,26.9485602570067,7.64415719119937,0,21.8655951421326,18.4952701796822,15.1657333504435,72.9634991404793,4.14300613835475,25.0867215019554,31.0538734911383,33.1867371360234,23.0615497256059,24.8692356911827,21.2835559915626,19.35265506477,21.0115722574218,35.4268424453784,20.3460426948471,25.0738617418484,27.3843482890888,30.0622656943838,16.775258509631,28.1069565131085,25.1336048176146,11.4955674843866,8.2672435909085,7.7987355029143,7.37007317023775,56.1714897768085,35.2275464170342,18.9738071690425,40.848715245185,33.7544403676036,58.5962285657959,45.4275536589721,34.5235443452572,26.3742777693397,61.6643530578166,34.3020225094953,48.1445638962004,50.1186587664971,46.6360916195855,41.1424152691502,36.0593445502038,42.0213002534307,40.0106363870042,34.4075483082891,32.9819029187249,34.2282005103753,40.2928074335443,35.7289043856947,38.0924731439069,22.984642990463,27.1632420058485,36.4232708277843,4.91549231119264,7.46308930632674,5.11494298912067,27.9619792922928,36.586065357051,36.192474353664,25.3316867076175,31.0887486160898,37.3326413187455,33.0198201545579,32.1928081679543,33.2781225746433,30.4435722339939,35.6243397051637,30.31973477015,42.251796365921,43.0318225970459,45.6301823785264,43.1094394556461,29.9452422023718,9.25172592354634,9.25576983322405,40.5247676016944,35.2999741227867,24.871420035164,26.4205417256579,28.6867676559883,31.0067770563471,12.3377556001573,29.97520975977,24.1281800448259,27.4559931416788,22.2259059315797,12.5834717211591,21.8299430373441,15.732160587095,22.1911444115106,34.1603052703089,37.1935527721165,32.9915151109409,43.8332620998834,28.7556861550306,33.7050742872291,37.78819788277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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14866 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=P48774 | |||
|association_with_transcript=0bp_to_NM_010360,uc008qxs.1_5end | |||
|cluster_id=chr3:107698767..107698819,+ | |||
|description=CAGE_peak_1_at_Gstm5_5end | |||
|id=chr3:107698767..107698819,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.36e-13!63;UBERON:0002346!4.95e-12!71;UBERON:0003075!4.95e-12!71;UBERON:0007284!4.95e-12!71;UBERON:0003056!7.82e-11!49;UBERON:0001049!3.80e-10!52;UBERON:0005068!3.80e-10!52;UBERON:0006241!3.80e-10!52;UBERON:0007135!3.80e-10!52;UBERON:0000955!1.01e-09!50;UBERON:0006238!1.01e-09!50;UBERON:0002616!1.10e-09!49;UBERON:0001017!1.09e-08!73;UBERON:0005743!1.09e-08!73;UBERON:0000025!1.14e-08!114;UBERON:0004111!1.36e-08!122;UBERON:0004121!1.43e-08!102;UBERON:0000924!1.43e-08!102;UBERON:0006601!1.43e-08!102;UBERON:0000073!4.05e-08!75;UBERON:0001016!4.05e-08!75;UBERON:0003103!8.23e-08!43;UBERON:0003080!1.05e-07!40;UBERON:0000468!1.19e-07!333;UBERON:0002780!3.19e-07!39;UBERON:0001890!3.19e-07!39;UBERON:0006240!3.19e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,7.24e-18,92;UBERON:0002346,6.15e-13,64;UBERON:0003075,6.15e-13,64;UBERON:0007284,6.15e-13,64;UBERON:0010371,4.94e-11,73;UBERON:0000073,6.28e-11,54;UBERON:0003056,7.79e-11,49;UBERON:0001049,3.78e-10,52;UBERON:0005068,3.78e-10,52;UBERON:0006241,3.78e-10,52;UBERON:0007135,3.78e-10,52;UBERON:0004121,6.35e-09,95;UBERON:0000924,6.35e-09,95;UBERON:0006601,6.35e-09,95;UBERON:0001017,1.08e-08,73;UBERON:0000025,1.14e-08,114;UBERON:0004111,1.36e-08,122;UBERON:0000955,1.75e-08,47;UBERON:0006238,1.75e-08,47;UBERON:0002616,1.92e-08,46;UBERON:0001016,4.04e-08,75;UBERON:0003103,8.21e-08,43;UBERON:0003080,1.04e-07,40;UBERON:0002780,3.18e-07,39;UBERON:0001890,3.18e-07,39;UBERON:0006240,3.18e-07,39 | |||
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| |||
|short_description=p1@Gstm5 | |||
}} |
Latest revision as of 07:14, 27 September 2015
Short description: | p1@Gstm5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gstm5_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_NM_010360, uc008qxs.1_5end |
EntrezGene: | Gstm5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 7.24e-18 | 92 |
neurectoderm | 6.15e-13 | 64 |
neural plate | 6.15e-13 | 64 |
presumptive neural plate | 6.15e-13 | 64 |
ecto-epithelium | 4.94e-11 | 73 |
regional part of nervous system | 6.28e-11 | 54 |
pre-chordal neural plate | 7.79e-11 | 49 |
neural tube | 3.78e-10 | 52 |
neural rod | 3.78e-10 | 52 |
future spinal cord | 3.78e-10 | 52 |
neural keel | 3.78e-10 | 52 |
ectoderm-derived structure | 6.35e-09 | 95 |
ectoderm | 6.35e-09 | 95 |
presumptive ectoderm | 6.35e-09 | 95 |
central nervous system | 1.08e-08 | 73 |
tube | 1.14e-08 | 114 |
anatomical conduit | 1.36e-08 | 122 |
brain | 1.75e-08 | 47 |
future brain | 1.75e-08 | 47 |
regional part of brain | 1.92e-08 | 46 |
nervous system | 4.04e-08 | 75 |
compound organ | 8.21e-08 | 43 |
anterior neural tube | 1.04e-07 | 40 |
regional part of forebrain | 3.18e-07 | 39 |
forebrain | 3.18e-07 | 39 |
future forebrain | 3.18e-07 | 39 |