FFCP PHASE1:Mm9::chr3:115591004..115591055,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr3:115591004..115591055,- to FFCP PHASE1:Mm9::chr3:115591004..115591055,-: NSchange) |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=68161 | |EntrezGene=68161 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q8CEK0 | |UniProt=Q8CEK0 | ||
|association_with_transcript=0bp_to_ENSMUST00000067500,NR_015487,NR_027895,uc008rbq.2,uc012cwp.1_5end | |||
|cluster_id=chr3:115591004..115591055,- | |||
|description=CAGE_peak_1_at_A930005H10Rik_5end | |||
|id=chr3:115591004..115591055,- | |||
|ontology_enrichment_celltype=CL:0000221!1.52e-13!44;CL:0000133!1.52e-13!44;CL:0002319!4.31e-13!43;CL:0000540!1.07e-10!33;CL:0000047!1.07e-10!33;CL:0000031!1.07e-10!33;CL:0000404!1.07e-10!33;CL:0000144!2.34e-10!121;CL:0000012!2.34e-10!121;CL:0002321!4.61e-10!70;CL:0000220!4.61e-10!70;CL:0002371!7.03e-10!118;CL:0000055!1.64e-09!50;CL:0000723!2.05e-09!91;CL:0000048!2.05e-09!91;CL:0000117!2.36e-09!23;CL:0000337!2.36e-09!23;CL:0000548!5.17e-09!115;CL:0000004!5.17e-09!115;CL:0000255!5.17e-09!115;CL:0000034!3.60e-08!97;CL:0000393!4.48e-07!39;CL:0000211!4.48e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.52e-13,44;CL:0000133,1.52e-13,44;CL:0002319,4.31e-13,43;CL:0000540,1.07e-10,33;CL:0000047,1.07e-10,33;CL:0000031,1.07e-10,33;CL:0000404,1.07e-10,33;CL:0002321,4.61e-10,70;CL:0000723,2.03e-09,91;CL:0000048,2.03e-09,91;CL:0000117,2.36e-09,23;CL:0000337,2.36e-09,23;CL:0000034,3.60e-08,97;CL:0000393,4.48e-07,39;CL:0000211,4.48e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.96e-21!73;UBERON:0005743!4.96e-21!73;UBERON:0000073!4.65e-19!75;UBERON:0001016!4.65e-19!75;UBERON:0001049!2.19e-13!52;UBERON:0005068!2.19e-13!52;UBERON:0006241!2.19e-13!52;UBERON:0007135!2.19e-13!52;UBERON:0000955!2.64e-12!50;UBERON:0006238!2.64e-12!50;UBERON:0002616!4.18e-12!49;UBERON:0002020!1.68e-11!34;UBERON:0004121!6.14e-11!102;UBERON:0000924!6.14e-11!102;UBERON:0006601!6.14e-11!102;UBERON:0000033!1.64e-10!63;UBERON:0007811!1.77e-10!86;UBERON:0002791!4.98e-09!29;UBERON:0003528!4.98e-09!29;UBERON:0001893!4.98e-09!29;UBERON:0003080!2.09e-08!40;UBERON:0002346!2.34e-08!71;UBERON:0003075!2.34e-08!71;UBERON:0007284!2.34e-08!71;UBERON:0002780!5.31e-08!39;UBERON:0001890!5.31e-08!39;UBERON:0006240!5.31e-08!39;UBERON:0000153!7.71e-08!94;UBERON:0000477!1.42e-07!154;UBERON:0000064!5.34e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.96e-21,73;UBERON:0001016,4.65e-19,75;UBERON:0000073,1.28e-14,54;UBERON:0004121,9.25e-14,95;UBERON:0000924,9.25e-14,95;UBERON:0006601,9.25e-14,95;UBERON:0001049,2.19e-13,52;UBERON:0005068,2.19e-13,52;UBERON:0006241,2.19e-13,52;UBERON:0007135,2.19e-13,52;UBERON:0002020,1.68e-11,34;UBERON:0002346,2.29e-11,64;UBERON:0003075,2.29e-11,64;UBERON:0007284,2.29e-11,64;UBERON:0000955,1.27e-10,47;UBERON:0006238,1.27e-10,47;UBERON:0002616,1.98e-10,46;UBERON:0010314,2.39e-10,92;UBERON:0010371,3.00e-09,73;UBERON:0003528,4.98e-09,29;UBERON:0002791,4.98e-09,29;UBERON:0001893,4.98e-09,29;UBERON:0003080,2.09e-08,40;UBERON:0002780,5.31e-08,39;UBERON:0001890,5.31e-08,39;UBERON:0006240,5.31e-08,39;UBERON:0011216,5.85e-08,194;UBERON:0000483,6.16e-08,174;UBERON:0000119,1.06e-07,176 | |||
|phase1_expression=8.80818659076367,11.5161884520989,11.8299802241279,6.95667686005709,7.01254021924886,9.56911849897772,10.2789561862031,45.4514098514348,8.16574588479667,7.95819389494778,4.96532107853964,2.71225340584144,42.6289817528702,48.2560621352866,8.32774404539157,9.92128810210147,4.89693314689703,26.3410908074128,24.5434836154272,26.3121584114779,11.3958008802433,6.95036658406197,9.14199261986274,12.6394014006791,12.6175104586944,18.9496548157957,15.9381938578858,12.0663890304098,11.5914285868388,11.5933859689568,13.082100128663,8.89042942843484,6.1506478758457,0,9.53210345179206,9.14290549471708,11.8418226632174,15.4856703372656,15.626706890476,13.6116173433188,16.4704816648684,9.56263678941824,7.76816564849846,6.54663453473002,4.96746962975621,3.30384153891027,32.8604364626176,20.2763395433815,30.5363794000916,26.4424662741025,15.9584520652913,33.0630898039435,11.9125650300993,22.4862264023517,22.1821907434026,5.91696702882678,5.73066879877513,6.70373719960675,14.1621522601718,16.9277113367051,19.6487735086916,7.79342423759004,6.22506357277798,18.4479442042687,22.7439263390404,31.2611250576284,29.6604109413221,49.5641613864805,12.4427534770173,13.6355997715008,13.4607975264884,23.9946826899195,28.2711732418065,11.6366259254206,8.33855597858656,7.35375029288017,55.0579404996944,22.2175968268227,44.0850750445419,17.013331117195,12.8997577479398,12.5019208933622,46.0651948352279,28.7008931116157,39.1163514308634,32.1145158166298,24.2031857358475,13.4207600994216,3.10477392666055,3.85414956544606,9.56552812715537,11.185510400758,17.6792546764015,30.2233787317178,16.2444104361917,10.7526452903361,21.3475518600263,5.62420064507591,7.53379413348319,10.6001872353102,17.8871143116384,14.115912515575,15.2883143823987,14.2213340630666,2.81438353314578,4.56047757855178,4.04419556011827,13.9304333257253,22.0097201100096,8.46120192669501,4.3371331691534,4.87144765299426,2.53677046981664,5.72746034099966,5.52666923537813,7.41432888845085,3.46072954828123,11.2787498397531,11.4999371753484,9.54424414689714,6.62524555381181,10.1823803158397,13.0474232852686,10.2473278954042,12.1479089951804,7.15279754584056,7.0690923458493,9.59844369589452,6.35351135365323,19.0234112044125,21.5025283324754,6.53402630986895,21.9018643442268,16.1100738118108,19.9476522777178,14.6017136760982,3.7680564624617,10.0769646194175,14.1524744722858,8.62811609134543,5.98554037628437,10.5754968039398,5.22180176435513,6.63101198477146,5.44291993210623,8.32739181851524,6.1843138209421,12.9351685369508,4.31135985865684,4.16033376369202,5.10258260075452,5.04150184583422,2.78047249225598,5.92028683087683,6.37924622864625,3.78165106955137,4.21327912387941,7.46308930632674,6.53576048609863,8.07790512888457,11.7263029990548,13.5046546095761,9.2330446878232,15.3476100762975,13.2669717083145,13.9520366850245,10.9992094573844,11.3262382096154,8.3925523455875,10.5067177010621,12.6467342891535,10.3801991071986,14.4903076092093,15.0311189011616,17.8746456279508,6.38008596751563,7.59963200862735,7.40461586657924,5.97207101498655,3.94802342162745,4.12375876230699,7.05892336181699,7.11609740303585,6.46767128782701,6.64340686162316,9.88193728344065,8.04272668160862,6.56556357735798,6.04388670069272,5.39291645192533,7.3486936957396,6.96994456390285,2.46568271239006,3.08470984046268,5.63538678365402,4.48032921259691,6.40043207653165,4.20814919341911,7.8413306034079,9.74226976665374,12.2459007716272,9.13139013021324,7.41131567717872,6.50695912292767,6.09332884850929,4.94696647246678,6.28866376304359,5.30589751455317,5.34714288740982,4.60313819921297,5.0261920300261,4.3929826110093,10.0637744569148,3.72140947668503,4.05648975048929,4.2938409251009,8.07288360848605,10.1313139486307,9.05290631816363,4.54779388249163,2.60743962307241,4.58311731593008,5.63256595892405,8.71032538697442,7.14130922658041,5.65887578787617,9.30047350226527,9.96591103419487,5.89982644032702,7.70157579163969,8.46156411142888,7.81104916340163,9.04747703635634,8.70249094109935,4.91764273019036,8.00216564283724,22.4770825982909,15.8235776899474,2.62295912602681,25.4995636476417,14.1978698737316,10.1514073517126,12.0637102730367,13.3822526853429,11.8083297263669,12.7384438854975,11.334699646897,10.8134667427185,16.602086673754,12.2102100240287,7.38088443082997,7.12262414669021,7.16702621155735,5.27904393512113,5.30980553359851,5.09839335925461,5.13950046840077,6.41257271170054,8.26845300066164,4.61152721915891,5.68542244970086,6.5436071305951,7.84294232446387,5.05658812697306,5.27093042874994,6.18813259489121,17.702859499197,7.56256594931503,6.20921682157222,5.35842587578981,6.56158864476412,7.84822797449111,9.05019613311665,10.3518082698964,2.81606049676452,2.96564899209348,15.8780446599573,13.5206727412014,6.13564821444441,4.88534691918062,5.252383136138,4.59594519286172,6.41257840585672,25.4032663754398,10.7648654902647,2.68302928352189,5.18544676635193,8.4765805652111,9.70529016819279,8.69357058184786,10.1987057996313,11.056164733569,12.714397590007,16.2294005062569,4.27053591334533,6.30290348093231,6.48032044930808,7.73626695253534,7.64268973111622,7.1478103583955,7.43881101528023,6.80565449158477,9.59150802359267,11.1841076355647,11.837551712368,3.73791365109947,2.48187735685646,4.4723773319131,4.26227417476513,5.91346439217724,5.75050469364194,4.55715346953825,4.71867049915699,5.31485065817213,10.0810502190253,11.0603892219862,5.6763060281246,7.60061083019722,8.70469513951227,8.59328139203911,7.15252877212554,9.61563596159751,8.56599257612548,8.88504759543699,10.592746125045,8.97353047717881,10.5254511198933,8.27421838106833,11.5708133159753,12.2434407152214,2.44184548711471,0.358855426437903,0.167884616364078,12.9437028001568,3.37828455812128,6.41030684935428,7.28852488868824,6.01886524842436,14.1187960654267,12.4287813856938,16.6139698897425,12.5452823110892,19.8673930733486,20.3956352295219,16.8755625057951,16.2115633160719,24.0165476761628,20.7104124700728,4.25528125095124,11.5717213286299,4.60980735536162,6.80698807791223,5.8691685535835,8.45680138870065,8.22312892865976,7.82933217507798,7.38114182061175,6.82282471762253,8.87177549615839,8.48818536237343,6.367622507952,6.4665403928918,5.80098236451694,7.1444053692461,6.72129090480162,5.59436739344745,5.35711671044299,6.91834924631667,7.88599280486455,6.92155644021416,5.48403236878838,8.57543858130738,5.36423468367385,7.53070010235921,6.76833499629258,7.10288220882176,5.02475221229689,8.41713407486608,5.93175090620871,7.97886307242064,6.54769669071503,6.97215785336847,7.13754460630223,6.99469618226249,8.88940112092552,9.23945532407683,13.390183244819,8.6030653456611,10.8977882741598 | |phase1_expression=8.80818659076367,11.5161884520989,11.8299802241279,6.95667686005709,7.01254021924886,9.56911849897772,10.2789561862031,45.4514098514348,8.16574588479667,7.95819389494778,4.96532107853964,2.71225340584144,42.6289817528702,48.2560621352866,8.32774404539157,9.92128810210147,4.89693314689703,26.3410908074128,24.5434836154272,26.3121584114779,11.3958008802433,6.95036658406197,9.14199261986274,12.6394014006791,12.6175104586944,18.9496548157957,15.9381938578858,12.0663890304098,11.5914285868388,11.5933859689568,13.082100128663,8.89042942843484,6.1506478758457,0,9.53210345179206,9.14290549471708,11.8418226632174,15.4856703372656,15.626706890476,13.6116173433188,16.4704816648684,9.56263678941824,7.76816564849846,6.54663453473002,4.96746962975621,3.30384153891027,32.8604364626176,20.2763395433815,30.5363794000916,26.4424662741025,15.9584520652913,33.0630898039435,11.9125650300993,22.4862264023517,22.1821907434026,5.91696702882678,5.73066879877513,6.70373719960675,14.1621522601718,16.9277113367051,19.6487735086916,7.79342423759004,6.22506357277798,18.4479442042687,22.7439263390404,31.2611250576284,29.6604109413221,49.5641613864805,12.4427534770173,13.6355997715008,13.4607975264884,23.9946826899195,28.2711732418065,11.6366259254206,8.33855597858656,7.35375029288017,55.0579404996944,22.2175968268227,44.0850750445419,17.013331117195,12.8997577479398,12.5019208933622,46.0651948352279,28.7008931116157,39.1163514308634,32.1145158166298,24.2031857358475,13.4207600994216,3.10477392666055,3.85414956544606,9.56552812715537,11.185510400758,17.6792546764015,30.2233787317178,16.2444104361917,10.7526452903361,21.3475518600263,5.62420064507591,7.53379413348319,10.6001872353102,17.8871143116384,14.115912515575,15.2883143823987,14.2213340630666,2.81438353314578,4.56047757855178,4.04419556011827,13.9304333257253,22.0097201100096,8.46120192669501,4.3371331691534,4.87144765299426,2.53677046981664,5.72746034099966,5.52666923537813,7.41432888845085,3.46072954828123,11.2787498397531,11.4999371753484,9.54424414689714,6.62524555381181,10.1823803158397,13.0474232852686,10.2473278954042,12.1479089951804,7.15279754584056,7.0690923458493,9.59844369589452,6.35351135365323,19.0234112044125,21.5025283324754,6.53402630986895,21.9018643442268,16.1100738118108,19.9476522777178,14.6017136760982,3.7680564624617,10.0769646194175,14.1524744722858,8.62811609134543,5.98554037628437,10.5754968039398,5.22180176435513,6.63101198477146,5.44291993210623,8.32739181851524,6.1843138209421,12.9351685369508,4.31135985865684,4.16033376369202,5.10258260075452,5.04150184583422,2.78047249225598,5.92028683087683,6.37924622864625,3.78165106955137,4.21327912387941,7.46308930632674,6.53576048609863,8.07790512888457,11.7263029990548,13.5046546095761,9.2330446878232,15.3476100762975,13.2669717083145,13.9520366850245,10.9992094573844,11.3262382096154,8.3925523455875,10.5067177010621,12.6467342891535,10.3801991071986,14.4903076092093,15.0311189011616,17.8746456279508,6.38008596751563,7.59963200862735,7.40461586657924,5.97207101498655,3.94802342162745,4.12375876230699,7.05892336181699,7.11609740303585,6.46767128782701,6.64340686162316,9.88193728344065,8.04272668160862,6.56556357735798,6.04388670069272,5.39291645192533,7.3486936957396,6.96994456390285,2.46568271239006,3.08470984046268,5.63538678365402,4.48032921259691,6.40043207653165,4.20814919341911,7.8413306034079,9.74226976665374,12.2459007716272,9.13139013021324,7.41131567717872,6.50695912292767,6.09332884850929,4.94696647246678,6.28866376304359,5.30589751455317,5.34714288740982,4.60313819921297,5.0261920300261,4.3929826110093,10.0637744569148,3.72140947668503,4.05648975048929,4.2938409251009,8.07288360848605,10.1313139486307,9.05290631816363,4.54779388249163,2.60743962307241,4.58311731593008,5.63256595892405,8.71032538697442,7.14130922658041,5.65887578787617,9.30047350226527,9.96591103419487,5.89982644032702,7.70157579163969,8.46156411142888,7.81104916340163,9.04747703635634,8.70249094109935,4.91764273019036,8.00216564283724,22.4770825982909,15.8235776899474,2.62295912602681,25.4995636476417,14.1978698737316,10.1514073517126,12.0637102730367,13.3822526853429,11.8083297263669,12.7384438854975,11.334699646897,10.8134667427185,16.602086673754,12.2102100240287,7.38088443082997,7.12262414669021,7.16702621155735,5.27904393512113,5.30980553359851,5.09839335925461,5.13950046840077,6.41257271170054,8.26845300066164,4.61152721915891,5.68542244970086,6.5436071305951,7.84294232446387,5.05658812697306,5.27093042874994,6.18813259489121,17.702859499197,7.56256594931503,6.20921682157222,5.35842587578981,6.56158864476412,7.84822797449111,9.05019613311665,10.3518082698964,2.81606049676452,2.96564899209348,15.8780446599573,13.5206727412014,6.13564821444441,4.88534691918062,5.252383136138,4.59594519286172,6.41257840585672,25.4032663754398,10.7648654902647,2.68302928352189,5.18544676635193,8.4765805652111,9.70529016819279,8.69357058184786,10.1987057996313,11.056164733569,12.714397590007,16.2294005062569,4.27053591334533,6.30290348093231,6.48032044930808,7.73626695253534,7.64268973111622,7.1478103583955,7.43881101528023,6.80565449158477,9.59150802359267,11.1841076355647,11.837551712368,3.73791365109947,2.48187735685646,4.4723773319131,4.26227417476513,5.91346439217724,5.75050469364194,4.55715346953825,4.71867049915699,5.31485065817213,10.0810502190253,11.0603892219862,5.6763060281246,7.60061083019722,8.70469513951227,8.59328139203911,7.15252877212554,9.61563596159751,8.56599257612548,8.88504759543699,10.592746125045,8.97353047717881,10.5254511198933,8.27421838106833,11.5708133159753,12.2434407152214,2.44184548711471,0.358855426437903,0.167884616364078,12.9437028001568,3.37828455812128,6.41030684935428,7.28852488868824,6.01886524842436,14.1187960654267,12.4287813856938,16.6139698897425,12.5452823110892,19.8673930733486,20.3956352295219,16.8755625057951,16.2115633160719,24.0165476761628,20.7104124700728,4.25528125095124,11.5717213286299,4.60980735536162,6.80698807791223,5.8691685535835,8.45680138870065,8.22312892865976,7.82933217507798,7.38114182061175,6.82282471762253,8.87177549615839,8.48818536237343,6.367622507952,6.4665403928918,5.80098236451694,7.1444053692461,6.72129090480162,5.59436739344745,5.35711671044299,6.91834924631667,7.88599280486455,6.92155644021416,5.48403236878838,8.57543858130738,5.36423468367385,7.53070010235921,6.76833499629258,7.10288220882176,5.02475221229689,8.41713407486608,5.93175090620871,7.97886307242064,6.54769669071503,6.97215785336847,7.13754460630223,6.99469618226249,8.88940112092552,9.23945532407683,13.390183244819,8.6030653456611,10.8977882741598 | ||
|short_description=p1@A930005H10Rik | |||
}} | }} |
Latest revision as of 08:58, 27 September 2015
Short description: | p1@A930005H10Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_A930005H10Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000067500, NR_015487, NR_027895, uc008rbq.2, uc012cwp.1_5end |
EntrezGene: | A930005H10Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.52e-13 | 44 |
neurectodermal cell | 1.52e-13 | 44 |
neural cell | 4.31e-13 | 43 |
neuron | 1.07e-10 | 33 |
neuronal stem cell | 1.07e-10 | 33 |
neuroblast | 1.07e-10 | 33 |
electrically signaling cell | 1.07e-10 | 33 |
embryonic cell | 4.61e-10 | 70 |
somatic stem cell | 2.03e-09 | 91 |
multi fate stem cell | 2.03e-09 | 91 |
CNS neuron (sensu Vertebrata) | 2.36e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.36e-09 | 23 |
stem cell | 3.60e-08 | 97 |
electrically responsive cell | 4.48e-07 | 39 |
electrically active cell | 4.48e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.96e-21 | 73 |
nervous system | 4.65e-19 | 75 |
regional part of nervous system | 1.28e-14 | 54 |
ectoderm-derived structure | 9.25e-14 | 95 |
ectoderm | 9.25e-14 | 95 |
presumptive ectoderm | 9.25e-14 | 95 |
neural tube | 2.19e-13 | 52 |
neural rod | 2.19e-13 | 52 |
future spinal cord | 2.19e-13 | 52 |
neural keel | 2.19e-13 | 52 |
gray matter | 1.68e-11 | 34 |
neurectoderm | 2.29e-11 | 64 |
neural plate | 2.29e-11 | 64 |
presumptive neural plate | 2.29e-11 | 64 |
brain | 1.27e-10 | 47 |
future brain | 1.27e-10 | 47 |
regional part of brain | 1.98e-10 | 46 |
structure with developmental contribution from neural crest | 2.39e-10 | 92 |
ecto-epithelium | 3.00e-09 | 73 |
brain grey matter | 4.98e-09 | 29 |
regional part of telencephalon | 4.98e-09 | 29 |
telencephalon | 4.98e-09 | 29 |
anterior neural tube | 2.09e-08 | 40 |
regional part of forebrain | 5.31e-08 | 39 |
forebrain | 5.31e-08 | 39 |
future forebrain | 5.31e-08 | 39 |
organ system subdivision | 5.85e-08 | 194 |
epithelium | 6.16e-08 | 174 |
cell layer | 1.06e-07 | 176 |