FFCP PHASE1:Mm9::chr11:63892980..63893029,+: Difference between revisions
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{{FFCP|EntrezGene=66456|HGNC=|MCL_coexpression_id=463|UniProt=|association_with_transcript=0bp_to_ENSMUST00000135037,NR_033780,uc007jkq.2_5end|description=CAGE_peak_1_at_2810001G20Rik_5end|id=chr11:63892980..63893029,+|ontology_enrichment_celltype=CL:0000117!6.94e-11!23;CL:0000337!6.94e-11!23;CL:0000540!7.70e-09!33;CL:0000047!7.70e-09!33;CL:0000031!7.70e-09!33;CL:0000404!7.70e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,6.93e-11,23;CL:0000337,6.93e-11,23;CL:0000540,7.69e-09,33;CL:0000047,7.69e-09,33;CL:0000031,7.69e-09,33;CL:0000404,7.69e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!2.84e-24!63;UBERON:0002346!3.12e-24!71;UBERON:0003075!3.12e-24!71;UBERON:0007284!3.12e-24!71;UBERON:0001049!7.06e-23!52;UBERON:0005068!7.06e-23!52;UBERON:0006241!7.06e-23!52;UBERON:0007135!7.06e-23!52;UBERON:0001017!6.94e-21!73;UBERON:0005743!6.94e-21!73;UBERON:0003056!3.05e-20!49;UBERON:0000955!1.24e-19!50;UBERON:0006238!1.24e-19!50;UBERON:0000073!2.56e-19!75;UBERON:0001016!2.56e-19!75;UBERON:0004121!2.81e-19!102;UBERON:0000924!2.81e-19!102;UBERON:0006601!2.81e-19!102;UBERON:0002616!2.95e-19!49;UBERON:0003080!7.77e-17!40;UBERON:0002780!3.63e-16!39;UBERON:0001890!3.63e-16!39;UBERON:0006240!3.63e-16!39;UBERON:0002020!2.28e-15!34;UBERON:0000153!3.95e-13!94;UBERON:0002791!1.91e-12!29;UBERON:0003528!1.91e-12!29;UBERON:0001893!1.91e-12!29;UBERON:0007811!3.31e-12!86;UBERON:0004111!3.08e-09!122;UBERON:0000956!3.83e-09!21;UBERON:0001869!3.83e-09!21;UBERON:0000203!3.83e-09!21;UBERON:0000025!9.35e-09!114;UBERON:0002619!2.11e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.36e-26,64;UBERON:0003075,2.36e-26,64;UBERON:0007284,2.36e-26,64;UBERON:0010371,2.87e-24,73;UBERON:0010314,1.98e-23,92;UBERON:0001049,7.03e-23,52;UBERON:0005068,7.03e-23,52;UBERON:0006241,7.03e-23,52;UBERON:0007135,7.03e-23,52;UBERON:0000073,2.15e-22,54;UBERON:0001017,6.92e-21,73;UBERON:0004121,2.81e-20,95;UBERON:0000924,2.81e-20,95;UBERON:0006601,2.81e-20,95;UBERON:0003056,3.03e-20,49;UBERON:0000955,1.59e-19,47;UBERON:0006238,1.59e-19,47;UBERON:0001016,2.56e-19,75;UBERON:0002616,3.75e-19,46;UBERON:0003080,7.75e-17,40;UBERON:0002780,3.62e-16,39;UBERON:0001890,3.62e-16,39;UBERON:0006240,3.62e-16,39;UBERON:0002020,2.27e-15,34;UBERON:0003528,1.91e-12,29;UBERON:0002791,1.91e-12,29;UBERON:0001893,1.91e-12,29;UBERON:0004111,3.07e-09,122;UBERON:0000956,3.83e-09,21;UBERON:0001869,3.83e-09,21;UBERON:0000203,3.83e-09,21;UBERON:0000025,9.33e-09,114;UBERON:0002619,2.11e-07,17|phase1_expression=31.869620573854,0.697950815278722,0.454999239389536,0.30246421130683,0.500895729946347,1.00727563147134,0.233612640595526,2.7115897922731,0.985521055061667,0.468129052643987,8.90333434772626,2.87179772383211,9.75844160607873,2.71003247498892,7.66152452176024,9.92128810210147,7.69518065940961,6.30924330716475,7.95263714913285,6.36584477697045,5.6128571499706,6.95036658406197,10.9703911438353,1.11994695955385,1.37645568640302,0,0,0.646413698057667,0.380046838912748,0.252030129759931,0.443461021310609,6.35030673459631,6.76571266343027,0,6.35473563452804,3.98963148860382,4.28755648150975,20.0895182753716,17.1893775795236,21.4644735029257,19.9998705930545,20.4913645487534,29.1306211818692,2.89562681343828,3.54819259268301,4.03802854755699,19.559783608701,8.72100625521786,10.9843091367236,7.97162586204562,5.87942970826523,4.31257693094915,2.34895648480831,2.90144856804538,2.01656279485478,4.11615097657515,4.29800159908135,1.54701627683233,24.8849246857305,32.797440714866,22.8179305262225,5.42151251310611,8.89294796111139,5.39939830368839,0.988866362566974,2.8419204597844,8.08920298399693,8.4528027170742,18.8715094401429,24.5710807763677,21.0324961351382,25.1372866275347,30.9215957332259,17.7611658861683,16.3895755441184,26.6573448116906,7.70811166995721,17.8762273319263,17.8183578577242,20.9699197491008,19.3953804437108,20.3156214517136,28.1974828991395,27.5753678915523,14.515833538797,22.3917724959987,23.7760706934502,25.1639251864156,5.6794644999888,3.09843396437821,11.0148505706638,7.74381489283248,1.3599426674155,3.77792234146472,5.84798775702902,6.2723764193627,3.37066608316204,4.94247935476367,5.19572009205738,4.94675404314476,38.7319404385871,10.2661181931454,7.64415719119937,0,1.73192832808971,1.26679932737549,2.02209778005913,3.4255163915718,6.47344709117929,8.46120192669501,13.8788261412909,10.3518262626128,6.91846491768175,9.79697163592047,8.81915303517786,9.17366116706631,3.95511948374998,7.22996784599558,3.5384422077995,8.25010934731787,8.17113618303456,7.27312879702833,7.45567044872489,24.8863677459815,20.5257772677186,4.34276993854605,2.87556298814209,6.59893004092748,4.82866862877646,29.6585466021549,20.5875271268382,14.7015591972051,19.8159725019195,24.5486839037117,25.973505569945,24.0117069340281,14.0538322113436,10.9478134136882,19.459652399393,8.20723237957248,19.1277051155174,26.4387420098494,22.3277040958633,19.591626318643,19.9346942513391,24.8540617352609,20.9891863013793,17.074422468775,10.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66456 | |||
|HGNC= | |||
|MCL_coexpression_id=463 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000135037,NR_033780,uc007jkq.2_5end | |||
|cluster_id=chr11:63892980..63893029,+ | |||
|description=CAGE_peak_1_at_2810001G20Rik_5end | |||
|id=chr11:63892980..63893029,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.94e-11!23;CL:0000337!6.94e-11!23;CL:0000540!7.70e-09!33;CL:0000047!7.70e-09!33;CL:0000031!7.70e-09!33;CL:0000404!7.70e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.93e-11,23;CL:0000337,6.93e-11,23;CL:0000540,7.69e-09,33;CL:0000047,7.69e-09,33;CL:0000031,7.69e-09,33;CL:0000404,7.69e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.84e-24!63;UBERON:0002346!3.12e-24!71;UBERON:0003075!3.12e-24!71;UBERON:0007284!3.12e-24!71;UBERON:0001049!7.06e-23!52;UBERON:0005068!7.06e-23!52;UBERON:0006241!7.06e-23!52;UBERON:0007135!7.06e-23!52;UBERON:0001017!6.94e-21!73;UBERON:0005743!6.94e-21!73;UBERON:0003056!3.05e-20!49;UBERON:0000955!1.24e-19!50;UBERON:0006238!1.24e-19!50;UBERON:0000073!2.56e-19!75;UBERON:0001016!2.56e-19!75;UBERON:0004121!2.81e-19!102;UBERON:0000924!2.81e-19!102;UBERON:0006601!2.81e-19!102;UBERON:0002616!2.95e-19!49;UBERON:0003080!7.77e-17!40;UBERON:0002780!3.63e-16!39;UBERON:0001890!3.63e-16!39;UBERON:0006240!3.63e-16!39;UBERON:0002020!2.28e-15!34;UBERON:0000153!3.95e-13!94;UBERON:0002791!1.91e-12!29;UBERON:0003528!1.91e-12!29;UBERON:0001893!1.91e-12!29;UBERON:0007811!3.31e-12!86;UBERON:0004111!3.08e-09!122;UBERON:0000956!3.83e-09!21;UBERON:0001869!3.83e-09!21;UBERON:0000203!3.83e-09!21;UBERON:0000025!9.35e-09!114;UBERON:0002619!2.11e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.36e-26,64;UBERON:0003075,2.36e-26,64;UBERON:0007284,2.36e-26,64;UBERON:0010371,2.87e-24,73;UBERON:0010314,1.98e-23,92;UBERON:0001049,7.03e-23,52;UBERON:0005068,7.03e-23,52;UBERON:0006241,7.03e-23,52;UBERON:0007135,7.03e-23,52;UBERON:0000073,2.15e-22,54;UBERON:0001017,6.92e-21,73;UBERON:0004121,2.81e-20,95;UBERON:0000924,2.81e-20,95;UBERON:0006601,2.81e-20,95;UBERON:0003056,3.03e-20,49;UBERON:0000955,1.59e-19,47;UBERON:0006238,1.59e-19,47;UBERON:0001016,2.56e-19,75;UBERON:0002616,3.75e-19,46;UBERON:0003080,7.75e-17,40;UBERON:0002780,3.62e-16,39;UBERON:0001890,3.62e-16,39;UBERON:0006240,3.62e-16,39;UBERON:0002020,2.27e-15,34;UBERON:0003528,1.91e-12,29;UBERON:0002791,1.91e-12,29;UBERON:0001893,1.91e-12,29;UBERON:0004111,3.07e-09,122;UBERON:0000956,3.83e-09,21;UBERON:0001869,3.83e-09,21;UBERON:0000203,3.83e-09,21;UBERON:0000025,9.33e-09,114;UBERON:0002619,2.11e-07,17 | |||
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| |||
|short_description=p1@2810001G20Rik | |||
}} |
Latest revision as of 21:44, 1 October 2015
Short description: | p1@2810001G20Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2810001G20Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:463 |
Association with transcript: | 0bp_to_ENSMUST00000135037, NR_033780, uc007jkq.2_5end |
EntrezGene: | 2810001G20Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.93e-11 | 23 |
neuroblast (sensu Vertebrata) | 6.93e-11 | 23 |
neuron | 7.69e-09 | 33 |
neuronal stem cell | 7.69e-09 | 33 |
neuroblast | 7.69e-09 | 33 |
electrically signaling cell | 7.69e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.36e-26 | 64 |
neural plate | 2.36e-26 | 64 |
presumptive neural plate | 2.36e-26 | 64 |
ecto-epithelium | 2.87e-24 | 73 |
structure with developmental contribution from neural crest | 1.98e-23 | 92 |
neural tube | 7.03e-23 | 52 |
neural rod | 7.03e-23 | 52 |
future spinal cord | 7.03e-23 | 52 |
neural keel | 7.03e-23 | 52 |
regional part of nervous system | 2.15e-22 | 54 |
central nervous system | 6.92e-21 | 73 |
ectoderm-derived structure | 2.81e-20 | 95 |
ectoderm | 2.81e-20 | 95 |
presumptive ectoderm | 2.81e-20 | 95 |
pre-chordal neural plate | 3.03e-20 | 49 |
brain | 1.59e-19 | 47 |
future brain | 1.59e-19 | 47 |
nervous system | 2.56e-19 | 75 |
regional part of brain | 3.75e-19 | 46 |
anterior neural tube | 7.75e-17 | 40 |
regional part of forebrain | 3.62e-16 | 39 |
forebrain | 3.62e-16 | 39 |
future forebrain | 3.62e-16 | 39 |
gray matter | 2.27e-15 | 34 |
brain grey matter | 1.91e-12 | 29 |
regional part of telencephalon | 1.91e-12 | 29 |
telencephalon | 1.91e-12 | 29 |
anatomical conduit | 3.07e-09 | 122 |
cerebral cortex | 3.83e-09 | 21 |
cerebral hemisphere | 3.83e-09 | 21 |
pallium | 3.83e-09 | 21 |
tube | 9.33e-09 | 114 |
regional part of cerebral cortex | 2.11e-07 | 17 |