FFCP PHASE1:Mm9::chrX:7182500..7182528,-: Difference between revisions
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{{FFCP|EntrezGene=54646|HGNC=|UniProt=|association_with_transcript=0bp_to_ENSMUST00000126170_5end|description=CAGE_peak_1_at_Ppp1r3f_5end|id=chrX:7182500..7182528,-|ontology_enrichment_celltype=CL:0000723!4.26e-10!91;CL:0000048!4.26e-10!91;CL:0000034!4.99e-09!97;CL:0000049!8.86e-09!19;CL:0002319!8.17e-08!43;CL:0000988!8.65e-08!32;CL:0002032!8.65e-08!32;CL:0000037!8.65e-08!32;CL:0000566!8.65e-08!32;CL:0000837!8.65e-08!32;CL:0000540!9.68e-08!33;CL:0000047!9.68e-08!33;CL:0000031!9.68e-08!33;CL:0000404!9.68e-08!33;CL:0000221!1.11e-07!44;CL:0000133!1.11e-07!44;CL:0000117!1.81e-07!23;CL:0000337!1.81e-07!23;CL:0000763!4.66e-07!16|ontology_enrichment_celltype_v019_2=CL:0000723,4.26e-10,91;CL:0000048,4.26e-10,91;CL:0000034,4.99e-09,97;CL:0000049,8.86e-09,19;CL:0002319,8.17e-08,43;CL:0000988,8.65e-08,32;CL:0002032,8.65e-08,32;CL:0000037,8.65e-08,32;CL:0000837,8.65e-08,32;CL:0000540,9.68e-08,33;CL:0000047,9.68e-08,33;CL:0000031,9.68e-08,33;CL:0000404,9.68e-08,33;CL:0000221,1.11e-07,44;CL:0000133,1.11e-07,44;CL:0000117,1.81e-07,23;CL:0000337,1.81e-07,23;CL:0000763,4.66e-07,16|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.23e-14!75;UBERON:0001016!1.23e-14!75;UBERON:0001017!4.76e-14!73;UBERON:0005743!4.76e-14!73;UBERON:0002020!3.94e-12!34;UBERON:0002791!1.96e-11!29;UBERON:0003528!1.96e-11!29;UBERON:0001893!1.96e-11!29;UBERON:0001049!7.40e-11!52;UBERON:0005068!7.40e-11!52;UBERON:0006241!7.40e-11!52;UBERON:0007135!7.40e-11!52;UBERON:0004121!7.57e-11!102;UBERON:0000924!7.57e-11!102;UBERON:0006601!7.57e-11!102;UBERON:0000955!1.19e-10!50;UBERON:0006238!1.19e-10!50;UBERON:0002616!3.68e-10!49;UBERON:0000033!6.05e-10!63;UBERON:0000956!8.51e-09!21;UBERON:0001869!8.51e-09!21;UBERON:0000203!8.51e-09!21;UBERON:0002346!1.05e-08!71;UBERON:0003075!1.05e-08!71;UBERON:0007284!1.05e-08!71;UBERON:0003080!3.09e-08!40;UBERON:0003056!5.12e-08!49;UBERON:0007811!7.51e-08!86;UBERON:0002780!8.27e-08!39;UBERON:0001890!8.27e-08!39;UBERON:0006240!8.27e-08!39;UBERON:0002371!3.06e-07!16;UBERON:0002619!7.99e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.23e-14,75;UBERON:0001017,4.76e-14,73;UBERON:0004121,9.75e-13,95;UBERON:0000924,9.75e-13,95;UBERON:0006601,9.75e-13,95;UBERON:0002020,3.94e-12,34;UBERON:0003528,1.96e-11,29;UBERON:0002791,1.96e-11,29;UBERON:0001893,1.96e-11,29;UBERON:0000073,4.63e-11,54;UBERON:0001049,7.40e-11,52;UBERON:0005068,7.40e-11,52;UBERON:0006241,7.40e-11,52;UBERON:0007135,7.40e-11,52;UBERON:0002346,7.93e-11,64;UBERON:0003075,7.93e-11,64;UBERON:0007284,7.93e-11,64;UBERON:0000955,3.10e-10,47;UBERON:0006238,3.10e-10,47;UBERON:0002616,9.54e-10,46;UBERON:0000956,8.51e-09,21;UBERON:0001869,8.51e-09,21;UBERON:0000203,8.51e-09,21;UBERON:0010371,2.15e-08,73;UBERON:0003080,3.09e-08,40;UBERON:0003056,5.12e-08,49;UBERON:0002780,8.27e-08,39;UBERON:0001890,8.27e-08,39;UBERON:0006240,8.27e-08,39;UBERON:0002371,3.06e-07,16;UBERON:0011216,5.93e-07,194;UBERON:0002619,7.99e-07,17|phase1_expression=6.56610273129655,2.44282785347553,3.63999391511629,3.32710632437513,6.01074875935617,6.21153306073992,3.97141489012394,7.10178278928669,4.646027831005,1.63845168425395,9.24577028417727,10.4501528283891,13.8672591244277,14.5992072039726,13.6575002344422,12.755941845559,11.8925519281785,8.67520954735154,10.5578113876419,11.8829102503448,9.86502165752409,15.9858431433425,12.5375898786689,4.63978026100879,5.27641346454491,2.29692785646008,7.32295393470427,4.95583835177545,6.65081968097309,8.06496415231778,7.53883736228036,35.5617177137393,35.6737576799051,15.8481681015439,14.4425809875637,11.802659820453,11.2293145944303,6.69650609179052,16.4080422349998,6.28228492768558,5.29408339227913,7.5135003345429,6.311634589405,8.56098362233926,10.1376931219515,6.60768307782054,5.47673941043627,13.5175596955877,7.68901639570651,9.13820525649132,9.93903593540074,5.75010257459886,15.6037823633695,12.3311564141929,10.0828139742739,4.11615097657515,8.30946975822394,5.15672092277442,11.9366711907163,16.9277113367051,13.3104594736298,7.45457970552091,2.66788438833342,38.6956878431002,42.5212535903799,35.524005747305,17.6764065205859,16.9056054341484,14.7239249478038,15.7956947848078,16.6156719467592,11.1403883917483,11.9269012113871,13.1065155160001,10.6388472830242,22.0612508786405,9.91042928994498,13.5348578370299,9.36999852863085,12.5291973343684,10.3381037270723,12.5019208933622,13.6799669510677,18.0084035210138,12.9878510610289,12.6690291753677,9.25415925194169,11.9295645328192,13.6307147999731,11.1090193356975,7.24661221754194,13.7667820317022,4.0798280022465,9.71465744948071,5.84798775702902,2.68816132258401,6.88177658645584,6.13549161281008,6.23486411046885,3.5333957451034,8.59144860637751,2.56652954828636,0,0,9.09262372247099,6.08063677140237,11.62706223534,7.87868770061514,6.99132285847364,8.60964406575984,9.36820764537134,8.52503339273995,6.6878494204257,6.63179618431539,5.40908052824242,6.28332956648377,9.88779870937496,7.95296463059514,13.2691582792481,6.63244084784378,9.27534377533653,6.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54646 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000126170_5end | |||
|cluster_id=chrX:7182500..7182528,- | |||
|description=CAGE_peak_1_at_Ppp1r3f_5end | |||
|id=chrX:7182500..7182528,- | |||
|ontology_enrichment_celltype=CL:0000723!4.26e-10!91;CL:0000048!4.26e-10!91;CL:0000034!4.99e-09!97;CL:0000049!8.86e-09!19;CL:0002319!8.17e-08!43;CL:0000988!8.65e-08!32;CL:0002032!8.65e-08!32;CL:0000037!8.65e-08!32;CL:0000566!8.65e-08!32;CL:0000837!8.65e-08!32;CL:0000540!9.68e-08!33;CL:0000047!9.68e-08!33;CL:0000031!9.68e-08!33;CL:0000404!9.68e-08!33;CL:0000221!1.11e-07!44;CL:0000133!1.11e-07!44;CL:0000117!1.81e-07!23;CL:0000337!1.81e-07!23;CL:0000763!4.66e-07!16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,4.26e-10,91;CL:0000048,4.26e-10,91;CL:0000034,4.99e-09,97;CL:0000049,8.86e-09,19;CL:0002319,8.17e-08,43;CL:0000988,8.65e-08,32;CL:0002032,8.65e-08,32;CL:0000037,8.65e-08,32;CL:0000837,8.65e-08,32;CL:0000540,9.68e-08,33;CL:0000047,9.68e-08,33;CL:0000031,9.68e-08,33;CL:0000404,9.68e-08,33;CL:0000221,1.11e-07,44;CL:0000133,1.11e-07,44;CL:0000117,1.81e-07,23;CL:0000337,1.81e-07,23;CL:0000763,4.66e-07,16 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.23e-14!75;UBERON:0001016!1.23e-14!75;UBERON:0001017!4.76e-14!73;UBERON:0005743!4.76e-14!73;UBERON:0002020!3.94e-12!34;UBERON:0002791!1.96e-11!29;UBERON:0003528!1.96e-11!29;UBERON:0001893!1.96e-11!29;UBERON:0001049!7.40e-11!52;UBERON:0005068!7.40e-11!52;UBERON:0006241!7.40e-11!52;UBERON:0007135!7.40e-11!52;UBERON:0004121!7.57e-11!102;UBERON:0000924!7.57e-11!102;UBERON:0006601!7.57e-11!102;UBERON:0000955!1.19e-10!50;UBERON:0006238!1.19e-10!50;UBERON:0002616!3.68e-10!49;UBERON:0000033!6.05e-10!63;UBERON:0000956!8.51e-09!21;UBERON:0001869!8.51e-09!21;UBERON:0000203!8.51e-09!21;UBERON:0002346!1.05e-08!71;UBERON:0003075!1.05e-08!71;UBERON:0007284!1.05e-08!71;UBERON:0003080!3.09e-08!40;UBERON:0003056!5.12e-08!49;UBERON:0007811!7.51e-08!86;UBERON:0002780!8.27e-08!39;UBERON:0001890!8.27e-08!39;UBERON:0006240!8.27e-08!39;UBERON:0002371!3.06e-07!16;UBERON:0002619!7.99e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.23e-14,75;UBERON:0001017,4.76e-14,73;UBERON:0004121,9.75e-13,95;UBERON:0000924,9.75e-13,95;UBERON:0006601,9.75e-13,95;UBERON:0002020,3.94e-12,34;UBERON:0003528,1.96e-11,29;UBERON:0002791,1.96e-11,29;UBERON:0001893,1.96e-11,29;UBERON:0000073,4.63e-11,54;UBERON:0001049,7.40e-11,52;UBERON:0005068,7.40e-11,52;UBERON:0006241,7.40e-11,52;UBERON:0007135,7.40e-11,52;UBERON:0002346,7.93e-11,64;UBERON:0003075,7.93e-11,64;UBERON:0007284,7.93e-11,64;UBERON:0000955,3.10e-10,47;UBERON:0006238,3.10e-10,47;UBERON:0002616,9.54e-10,46;UBERON:0000956,8.51e-09,21;UBERON:0001869,8.51e-09,21;UBERON:0000203,8.51e-09,21;UBERON:0010371,2.15e-08,73;UBERON:0003080,3.09e-08,40;UBERON:0003056,5.12e-08,49;UBERON:0002780,8.27e-08,39;UBERON:0001890,8.27e-08,39;UBERON:0006240,8.27e-08,39;UBERON:0002371,3.06e-07,16;UBERON:0011216,5.93e-07,194;UBERON:0002619,7.99e-07,17 | |||
|phase1_expression=6.56610273129655,2.44282785347553,3.63999391511629,3.32710632437513,6.01074875935617,6.21153306073992,3.97141489012394,7.10178278928669,4.646027831005,1.63845168425395,9.24577028417727,10.4501528283891,13.8672591244277,14.5992072039726,13.6575002344422,12.755941845559,11.8925519281785,8.67520954735154,10.5578113876419,11.8829102503448,9.86502165752409,15.9858431433425,12.5375898786689,4.63978026100879,5.27641346454491,2.29692785646008,7.32295393470427,4.95583835177545,6.65081968097309,8.06496415231778,7.53883736228036,35.5617177137393,35.6737576799051,15.8481681015439,14.4425809875637,11.802659820453,11.2293145944303,6.69650609179052,16.4080422349998,6.28228492768558,5.29408339227913,7.5135003345429,6.311634589405,8.56098362233926,10.1376931219515,6.60768307782054,5.47673941043627,13.5175596955877,7.68901639570651,9.13820525649132,9.93903593540074,5.75010257459886,15.6037823633695,12.3311564141929,10.0828139742739,4.11615097657515,8.30946975822394,5.15672092277442,11.9366711907163,16.9277113367051,13.3104594736298,7.45457970552091,2.66788438833342,38.6956878431002,42.5212535903799,35.524005747305,17.6764065205859,16.9056054341484,14.7239249478038,15.7956947848078,16.6156719467592,11.1403883917483,11.9269012113871,13.1065155160001,10.6388472830242,22.0612508786405,9.91042928994498,13.5348578370299,9.36999852863085,12.5291973343684,10.3381037270723,12.5019208933622,13.6799669510677,18.0084035210138,12.9878510610289,12.6690291753677,9.25415925194169,11.9295645328192,13.6307147999731,11.1090193356975,7.24661221754194,13.7667820317022,4.0798280022465,9.71465744948071,5.84798775702902,2.68816132258401,6.88177658645584,6.13549161281008,6.23486411046885,3.5333957451034,8.59144860637751,2.56652954828636,0,0,9.09262372247099,6.08063677140237,11.62706223534,7.87868770061514,6.99132285847364,8.60964406575984,9.36820764537134,8.52503339273995,6.6878494204257,6.63179618431539,5.40908052824242,6.28332956648377,9.88779870937496,7.95296463059514,13.2691582792481,6.63244084784378,9.27534377533653,6.78825354389311,9.31958806090611,19.9090941967852,23.458031163107,8.9409969323007,20.967646788536,16.7972764678154,19.9500256504712,16.3271796951257,17.3850229071078,13.0680526197379,19.8159725019195,13.0414883238469,11.8439185398949,12.8170597823529,4.78645010096487,9.70374370758726,4.80173241023982,10.9429765060966,7.28674480591141,9.42598628177239,7.38254732201932,8.59017461663576,9.18492738542926,11.5302348256365,12.8371362646828,9.8307280880826,7.11374376678379,5.29497024469894,8.09375171154165,7.67185063496512,7.22922847986555,6.61679116392116,6.79081050146213,6.56813080501028,14.0442637462647,9.77922047035918,20.1756084570871,4.55676699578104,7.97388603935727,6.30217215113552,6.62885259638589,7.47704080640135,5.86215028972037,9.99895962426754,9.12129564758705,8.17357396570186,9.05079174524142,6.07419617092652,6.80978000185188,8.18719929581861,7.02560368931362,10.3338942445486,12.8276868624118,11.1136981369627,7.26921322564356,8.19796756656987,7.67837701926842,8.12828351511535,7.98978260196979,12.7060620512706,18.902133726814,19.9736907418187,9.96511029243474,19.2697777027093,16.5881237808178,13.7279965708394,14.622306533934,3.59527763461689,10.3746263939853,7.96565093017469,8.34538764193559,7.5404018322421,3.38123207019241,7.73875045812194,7.17624202520215,8.97738494596078,10.2443190141297,12.251642282307,13.815888050041,13.5736880313981,12.4510103376603,9.34332592010127,8.45203678986773,11.2431056192427,10.9544465549792,13.0235666266305,12.2220408855082,8.63088412352432,7.62035565842666,6.86403532970204,4.31304619582064,7.81495990103857,7.48890415474945,6.56705082662491,9.14926808961752,9.16642690590398,11.4546977903295,7.01118223550794,6.19266910479698,5.7713329163564,4.45911471748154,7.20276906999808,9.28370199455454,5.85400943573396,6.30540576424764,7.9727288273559,7.17546458958692,11.4704320301017,10.3610989119537,8.82359257347221,21.1107797514981,22.3001330365671,8.35999264132362,9.3818493743609,14.7706542788769,14.417037450841,2.13115428989678,8.58401152494868,7.2566890465739,14.055794794679,10.9865932843727,10.7535959078648,13.1451217708613,8.77537245445381,17.8116708736954,13.151513606009,8.69633111482352,17.6726724031994,7.09700426041343,5.52003371368491,5.21238269931443,9.40329700943452,6.63725691699814,9.46844481004428,6.34879469625977,5.09233715340925,7.97315110778086,8.30074899448604,6.46070732920553,6.90714086007261,8.91243445961803,5.05658812697306,14.7586052004998,5.15677716240934,11.234506989875,6.30213829109586,6.98536892426874,6.00143698088458,4.78818630834139,8.91844088010353,7.56925494769756,6.69822888052118,5.16277757740163,7.83778662196135,6.17479514553893,5.27636009412736,5.32832608096488,6.45348296731268,8.47543642422269,9.02774948597837,9.03590593552537,11.8672193286726,14.1822831062218,9.70018279427146,7.9633646768976,13.1857919903284,12.1657862671712,10.9813523139131,10.3686842296252,9.6566502103324,10.9177979305495,2.86401185404534,7.11755985557555,6.50622294805916,9.828486014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| |||
|short_description=p1@Ppp1r3f | |||
}} |
Latest revision as of 00:25, 2 October 2015
Short description: | p1@Ppp1r3f |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ppp1r3f_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000126170_5end |
EntrezGene: | Ppp1r3f |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 4.26e-10 | 91 |
multi fate stem cell | 4.26e-10 | 91 |
stem cell | 4.99e-09 | 97 |
common myeloid progenitor | 8.86e-09 | 19 |
neural cell | 8.17e-08 | 43 |
hematopoietic cell | 8.65e-08 | 32 |
hematopoietic oligopotent progenitor cell | 8.65e-08 | 32 |
hematopoietic stem cell | 8.65e-08 | 32 |
hematopoietic multipotent progenitor cell | 8.65e-08 | 32 |
neuron | 9.68e-08 | 33 |
neuronal stem cell | 9.68e-08 | 33 |
neuroblast | 9.68e-08 | 33 |
electrically signaling cell | 9.68e-08 | 33 |
ectodermal cell | 1.11e-07 | 44 |
neurectodermal cell | 1.11e-07 | 44 |
CNS neuron (sensu Vertebrata) | 1.81e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.81e-07 | 23 |
myeloid cell | 4.66e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.23e-14 | 75 |
central nervous system | 4.76e-14 | 73 |
ectoderm-derived structure | 9.75e-13 | 95 |
ectoderm | 9.75e-13 | 95 |
presumptive ectoderm | 9.75e-13 | 95 |
gray matter | 3.94e-12 | 34 |
brain grey matter | 1.96e-11 | 29 |
regional part of telencephalon | 1.96e-11 | 29 |
telencephalon | 1.96e-11 | 29 |
regional part of nervous system | 4.63e-11 | 54 |
neural tube | 7.40e-11 | 52 |
neural rod | 7.40e-11 | 52 |
future spinal cord | 7.40e-11 | 52 |
neural keel | 7.40e-11 | 52 |
neurectoderm | 7.93e-11 | 64 |
neural plate | 7.93e-11 | 64 |
presumptive neural plate | 7.93e-11 | 64 |
brain | 3.10e-10 | 47 |
future brain | 3.10e-10 | 47 |
regional part of brain | 9.54e-10 | 46 |
cerebral cortex | 8.51e-09 | 21 |
cerebral hemisphere | 8.51e-09 | 21 |
pallium | 8.51e-09 | 21 |
ecto-epithelium | 2.15e-08 | 73 |
anterior neural tube | 3.09e-08 | 40 |
pre-chordal neural plate | 5.12e-08 | 49 |
regional part of forebrain | 8.27e-08 | 39 |
forebrain | 8.27e-08 | 39 |
future forebrain | 8.27e-08 | 39 |
bone marrow | 3.06e-07 | 16 |
organ system subdivision | 5.93e-07 | 194 |
regional part of cerebral cortex | 7.99e-07 | 17 |