FFCP PHASE1:Mm9::chrX:97925256..97925302,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=71584|HGNC=|MCL_coexpression_id=3765|UniProt=Q9ESM6|association_with_transcript=0bp_to_ENSMUST00000019503,ENSMUST00000156336_5end|description=CAGE_peak_3_at_Gdpd2_5end|id=chrX:97925256..97925302,+|ontology_enrichment_celltype=CL:0002319!1.44e-13!43;CL:0000221!2.07e-13!44;CL:0000133!2.07e-13!44;CL:0000055!6.21e-13!50;CL:0000393!1.99e-10!39;CL:0000211!1.99e-10!39;CL:0000540!2.82e-10!33;CL:0000047!2.82e-10!33;CL:0000031!2.82e-10!33;CL:0000404!2.82e-10!33|ontology_enrichment_celltype_v019_2=CL:0002319,6.92e-15,43;CL:0000221,3.62e-14,44;CL:0000133,3.62e-14,44;CL:0000540,1.42e-11,33;CL:0000047,1.42e-11,33;CL:0000031,1.42e-11,33;CL:0000404,1.42e-11,33;CL:0000393,1.67e-11,39;CL:0000211,1.67e-11,39;CL:0000117,1.97e-07,23;CL:0000337,1.97e-07,23;CL:0002321,5.98e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.46e-17!73;UBERON:0005743!2.46e-17!73;UBERON:0000073!8.62e-17!75;UBERON:0001016!8.62e-17!75;UBERON:0004121!1.40e-15!102;UBERON:0000924!1.40e-15!102;UBERON:0006601!1.40e-15!102;UBERON:0002346!2.47e-10!71;UBERON:0003075!2.47e-10!71;UBERON:0007284!2.47e-10!71;UBERON:0001049!4.99e-09!52;UBERON:0005068!4.99e-09!52;UBERON:0006241!4.99e-09!52;UBERON:0007135!4.99e-09!52;UBERON:0000033!4.69e-08!63;UBERON:0000955!1.05e-07!50;UBERON:0006238!1.05e-07!50;UBERON:0002616!1.16e-07!49;UBERON:0002020!3.85e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-16,73;UBERON:0001016,4.68e-16,75;UBERON:0004121,1.81e-14,95;UBERON:0000924,1.81e-14,95;UBERON:0006601,1.81e-14,95;UBERON:0002346,2.53e-09,64;UBERON:0003075,2.53e-09,64;UBERON:0007284,2.53e-09,64;UBERON:0010371,3.86e-09,73;UBERON:0000073,1.55e-08,54;UBERON:0001049,1.01e-07,52;UBERON:0005068,1.01e-07,52;UBERON:0006241,1.01e-07,52;UBERON:0007135,1.01e-07,52;UBERON:0002020,3.75e-07,34|phase1_expression=2.88267924788629,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,1.99865857089398,3.84703008040669,1.39912375625629,0.157731082679119,0,0.42438965179803,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5140067862145,12.7734933336588,16.5192076945513,0.782391344348039,30.741547049643,38.4450819785326,29.5533446592911,9.23910382727393,23.0004102983955,0,0,0,0,0.286533439938757,0.515672092277442,4.24864567805155,6.34789175126439,1.26766280701236,0.677689064138264,0.889294796111139,0,0,0,10.7856039786626,17.28982373947,1.65903379693564,1.08004750665353,1.05162480675691,7.42692559449889,5.96345060569357,0.61245399607477,1.24599112323707,0,6.60695285996332,3.19218345212969,3.99376986466233,3.16527090552465,3.47653045689157,4.68822033501084,5.30447698102624,3.37657566019008,3.0559649555362,7.36571463684169,5.26775218956681,4.10078780815661,0.075726193333184,1.13357340160178,0,0,0,0,0,0,2.24711072210803,3.57903677413921,1.29893002301434,2.47337702157238,0.985903938436763,2.56652954828636,15.2883143823987,0,0,0,0,1.25602267690966,0.258937883647172,0,0.693941307064543,1.82679286987285,1.15307748628029,1.50722640552623,1.52865319276416,0.125666591329675,0.494389935468748,0,18.5768215909474,7.27950824763341,6.40440403535141,8.24287930329878,0,0.585561594023094,0.628340120440365,0,0,0,0,3.89455662452539,2.28750301409313,1.88481528169297,1.73824320192276,1.79000820131231,4.1557608911912,1.62241263067758,6.00852246716866,9.82815067819735,0.252722758433675,0.841767423545896,1.82168620147785,1.60931473103431,2.16074555766419,2.86339153887859,1.97305847538851,0.768682321709099,1.21812241927647,1.81092359517311,0,0.756424320671277,0.175951124163949,0.657587197282725,0.834141747676794,1.0447564995665,3.2925141825271,2.38841120182192,0,0,0,0,0.234526059981096,0.180062061461015,0,0.393528463494808,0,0.465067889500816,0,0.583826711835847,0.658239399653922,0.656669856316381,0.162137619091711,0.146199987425332,0.219550115291051,0.134206418760372,3.15434922846191,3.39585220851639,0,0,0.213288250535234,0.232236671860439,0.38660238396628,0.201683524623343,0.444756087689741,0.190225626112559,0,0.494096864172033,1.00534083520108,0.795825888164603,0.19496408711912,0,0,0,0.379335801906163,0.571242563048644,4.50830942692322,0.407302655690628,1.16371492300575,0.701358198903186,0.189709611372772,0,0,0.123397163921801,0.296452627087149,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0.575392274901621,0,0,0,0,0.312037673114561,0,0,0,2.03228509183265,0,0.162964976442026,0.169745085775188,0.234690248288502,1.17254380209271,5.95109102215034,9.36641509717434,1.7339865851681,0.44292937929755,0.637819074629948,1.14704320301017,1.20879487306127,6.79850575333104,0,0,0,0.275936746304732,4.97706828962155,3.39913891117389,1.3114795630134,0.757412781613119,2.2085575359138,4.29482618726302,11.8482868753039,3.58453196928828,2.45078541490634,3.39691836946599,2.83367491172426,3.79932615284705,3.55759000151871,1.28528526568723,6.38730383437209,6.23229612835393,4.72372182125371,4.94910368917606,0,1.21390318077491,0.604647113929502,0.565815239267694,2.65771703592696,0.307435147943927,2.06742634534577,1.81766864738753,1.78248689192361,0.948110273807448,0,1.03135543248187,0.340439605753788,1.08036656418786,0.776152102696527,0.857348140126369,1.24138163549592,1.96205699362278,2.30368628842969,1.2178597964584,10.0908834467395,0.21183207086382,0.220528398054962,1.15420377059036,2.58343082713449,2.0506394475573,1.43246812803764,1.14898629821543,0.582961673259701,4.07935664423121,35.0285305635598,44.1667897441296,116.487357715549,26.5599524376614,35.5404992074665,30.8850533828806,0,0,0,0,0,3.04979200690273,0.86404272657441,1.88179466413022,2.62035076495413,1.61837215661785,0.909188012978695,0.26175594198403,0,0,0,1.64468200648377,0.827292452285488,0.972255941720238,1.03327858782185,2.19642963138012,0.469428954583016,1.3020438484395,1.04859344425711,0.724752362478018,0.288030006257865,0,1.21635129174099,1.1298205288131,0.389762468933385,0,0.198681354781265,0,0.295379054349154,0.100966449948148,0,0.100826185136841,0.194915761479505,0,0,0.226730383615211,0,0,0,0,0.187682475451182,1.09890974560359,0,1.50471631210609,2.82375921308533,3.22227665555024,1.14579102687879,1.71853182343688,0.685082519770642,1.5107877947794,1.35004500046361,0.45032120322422,3.17199686288943,0.51776031175182,0.415149390336707,1.99512436700516,2.56100408631201,2.67417388775123,0.628839487883947,1.10306105070008,2.00022055021454,2.67845574410562,2.24643446714271,2.77966932940177,1.52087579934144,2.07488975524684,1.87283014939765,0.960377286073039,2.06767688240208,2.85776214769844,0.927074607558844,1.54327376370964,3.70877310722976,1.91358596174717,2.05721551431249,1.95223386775271,1.66905332963125,2.32554266611726,1.2234219453993,1.4384483341585,0.914639864363863,2.10455769150274,1.35804113845862,0.561142271657738,2.01679530811096,0.788035859004508,1.63692417267876,0.929621047115796,1.73615949883027,2.49810577937946,3.27504251823572,3.22306581072447,3.06061331310149,3.08827986767322,3.47801753430632|short_description=p3@Gdpd2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=71584 | |||
|HGNC= | |||
|MCL_coexpression_id=3765 | |||
|TSSclassifier=NA | |||
|UniProt=Q9ESM6 | |||
|association_with_transcript=0bp_to_ENSMUST00000019503,ENSMUST00000156336_5end | |||
|cluster_id=chrX:97925256..97925302,+ | |||
|description=CAGE_peak_3_at_Gdpd2_5end | |||
|id=chrX:97925256..97925302,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.44e-13!43;CL:0000221!2.07e-13!44;CL:0000133!2.07e-13!44;CL:0000055!6.21e-13!50;CL:0000393!1.99e-10!39;CL:0000211!1.99e-10!39;CL:0000540!2.82e-10!33;CL:0000047!2.82e-10!33;CL:0000031!2.82e-10!33;CL:0000404!2.82e-10!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.92e-15,43;CL:0000221,3.62e-14,44;CL:0000133,3.62e-14,44;CL:0000540,1.42e-11,33;CL:0000047,1.42e-11,33;CL:0000031,1.42e-11,33;CL:0000404,1.42e-11,33;CL:0000393,1.67e-11,39;CL:0000211,1.67e-11,39;CL:0000117,1.97e-07,23;CL:0000337,1.97e-07,23;CL:0002321,5.98e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.46e-17!73;UBERON:0005743!2.46e-17!73;UBERON:0000073!8.62e-17!75;UBERON:0001016!8.62e-17!75;UBERON:0004121!1.40e-15!102;UBERON:0000924!1.40e-15!102;UBERON:0006601!1.40e-15!102;UBERON:0002346!2.47e-10!71;UBERON:0003075!2.47e-10!71;UBERON:0007284!2.47e-10!71;UBERON:0001049!4.99e-09!52;UBERON:0005068!4.99e-09!52;UBERON:0006241!4.99e-09!52;UBERON:0007135!4.99e-09!52;UBERON:0000033!4.69e-08!63;UBERON:0000955!1.05e-07!50;UBERON:0006238!1.05e-07!50;UBERON:0002616!1.16e-07!49;UBERON:0002020!3.85e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-16,73;UBERON:0001016,4.68e-16,75;UBERON:0004121,1.81e-14,95;UBERON:0000924,1.81e-14,95;UBERON:0006601,1.81e-14,95;UBERON:0002346,2.53e-09,64;UBERON:0003075,2.53e-09,64;UBERON:0007284,2.53e-09,64;UBERON:0010371,3.86e-09,73;UBERON:0000073,1.55e-08,54;UBERON:0001049,1.01e-07,52;UBERON:0005068,1.01e-07,52;UBERON:0006241,1.01e-07,52;UBERON:0007135,1.01e-07,52;UBERON:0002020,3.75e-07,34 | |||
|phase1_expression=2.88267924788629,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,1.99865857089398,3.84703008040669,1.39912375625629,0.157731082679119,0,0.42438965179803,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5140067862145,12.7734933336588,16.5192076945513,0.782391344348039,30.741547049643,38.4450819785326,29.5533446592911,9.23910382727393,23.0004102983955,0,0,0,0,0.286533439938757,0.515672092277442,4.24864567805155,6.34789175126439,1.26766280701236,0.677689064138264,0.889294796111139,0,0,0,10.7856039786626,17.28982373947,1.65903379693564,1.08004750665353,1.05162480675691,7.42692559449889,5.96345060569357,0.61245399607477,1.24599112323707,0,6.60695285996332,3.19218345212969,3.99376986466233,3.16527090552465,3.47653045689157,4.68822033501084,5.30447698102624,3.37657566019008,3.0559649555362,7.36571463684169,5.26775218956681,4.10078780815661,0.075726193333184,1.13357340160178,0,0,0,0,0,0,2.24711072210803,3.57903677413921,1.29893002301434,2.47337702157238,0.985903938436763,2.56652954828636,15.2883143823987,0,0,0,0,1.25602267690966,0.258937883647172,0,0.693941307064543,1.82679286987285,1.15307748628029,1.50722640552623,1.52865319276416,0.125666591329675,0.494389935468748,0,18.5768215909474,7.27950824763341,6.40440403535141,8.24287930329878,0,0.585561594023094,0.628340120440365,0,0,0,0,3.89455662452539,2.28750301409313,1.88481528169297,1.73824320192276,1.79000820131231,4.1557608911912,1.62241263067758,6.00852246716866,9.82815067819735,0.252722758433675,0.841767423545896,1.82168620147785,1.60931473103431,2.16074555766419,2.86339153887859,1.97305847538851,0.768682321709099,1.21812241927647,1.81092359517311,0,0.756424320671277,0.175951124163949,0.657587197282725,0.834141747676794,1.0447564995665,3.2925141825271,2.38841120182192,0,0,0,0,0.234526059981096,0.180062061461015,0,0.393528463494808,0,0.465067889500816,0,0.583826711835847,0.658239399653922,0.656669856316381,0.162137619091711,0.146199987425332,0.219550115291051,0.134206418760372,3.15434922846191,3.39585220851639,0,0,0.213288250535234,0.232236671860439,0.38660238396628,0.201683524623343,0.444756087689741,0.190225626112559,0,0.494096864172033,1.00534083520108,0.795825888164603,0.19496408711912,0,0,0,0.379335801906163,0.571242563048644,4.50830942692322,0.407302655690628,1.16371492300575,0.701358198903186,0.189709611372772,0,0,0.123397163921801,0.296452627087149,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0.575392274901621,0,0,0,0,0.312037673114561,0,0,0,2.03228509183265,0,0.162964976442026,0.169745085775188,0.234690248288502,1.17254380209271,5.95109102215034,9.36641509717434,1.7339865851681,0.44292937929755,0.637819074629948,1.14704320301017,1.20879487306127,6.79850575333104,0,0,0,0.275936746304732,4.97706828962155,3.39913891117389,1.3114795630134,0.757412781613119,2.2085575359138,4.29482618726302,11.8482868753039,3.58453196928828,2.45078541490634,3.39691836946599,2.83367491172426,3.79932615284705,3.55759000151871,1.28528526568723,6.38730383437209,6.23229612835393,4.72372182125371,4.94910368917606,0,1.21390318077491,0.604647113929502,0.565815239267694,2.65771703592696,0.307435147943927,2.06742634534577,1.81766864738753,1.78248689192361,0.948110273807448,0,1.03135543248187,0.340439605753788,1.08036656418786,0.776152102696527,0.857348140126369,1.24138163549592,1.96205699362278,2.30368628842969,1.2178597964584,10.0908834467395,0.21183207086382,0.220528398054962,1.15420377059036,2.58343082713449,2.0506394475573,1.43246812803764,1.14898629821543,0.582961673259701,4.07935664423121,35.0285305635598,44.1667897441296,116.487357715549,26.5599524376614,35.5404992074665,30.8850533828806,0,0,0,0,0,3.04979200690273,0.86404272657441,1.88179466413022,2.62035076495413,1.61837215661785,0.909188012978695,0.26175594198403,0,0,0,1.64468200648377,0.827292452285488,0.972255941720238,1.03327858782185,2.19642963138012,0.469428954583016,1.3020438484395,1.04859344425711,0.724752362478018,0.288030006257865,0,1.21635129174099,1.1298205288131,0.389762468933385,0,0.198681354781265,0,0.295379054349154,0.100966449948148,0,0.100826185136841,0.194915761479505,0,0,0.226730383615211,0,0,0,0,0.187682475451182,1.09890974560359,0,1.50471631210609,2.82375921308533,3.22227665555024,1.14579102687879,1.71853182343688,0.685082519770642,1.5107877947794,1.35004500046361,0.45032120322422,3.17199686288943,0.51776031175182,0.415149390336707,1.99512436700516,2.56100408631201,2.67417388775123,0.628839487883947,1.10306105070008,2.00022055021454,2.67845574410562,2.24643446714271,2.77966932940177,1.52087579934144,2.07488975524684,1.87283014939765,0.960377286073039,2.06767688240208,2.85776214769844,0.927074607558844,1.54327376370964,3.70877310722976,1.91358596174717,2.05721551431249,1.95223386775271,1.66905332963125,2.32554266611726,1.2234219453993,1.4384483341585,0.914639864363863,2.10455769150274,1.35804113845862,0.561142271657738,2.01679530811096,0.788035859004508,1.63692417267876,0.929621047115796,1.73615949883027,2.49810577937946,3.27504251823572,3.22306581072447,3.06061331310149,3.08827986767322,3.47801753430632 | |||
|short_description=p3@Gdpd2 | |||
}} |
Latest revision as of 00:55, 2 October 2015
Short description: | p3@Gdpd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gdpd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3765 |
Association with transcript: | 0bp_to_ENSMUST00000019503, ENSMUST00000156336_5end |
EntrezGene: | Gdpd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.92e-15 | 43 |
ectodermal cell | 3.62e-14 | 44 |
neurectodermal cell | 3.62e-14 | 44 |
neuron | 1.42e-11 | 33 |
neuronal stem cell | 1.42e-11 | 33 |
neuroblast | 1.42e-11 | 33 |
electrically signaling cell | 1.42e-11 | 33 |
electrically responsive cell | 1.67e-11 | 39 |
electrically active cell | 1.67e-11 | 39 |
CNS neuron (sensu Vertebrata) | 1.97e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.97e-07 | 23 |
embryonic cell | 5.98e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.27e-16 | 73 |
nervous system | 4.68e-16 | 75 |
ectoderm-derived structure | 1.81e-14 | 95 |
ectoderm | 1.81e-14 | 95 |
presumptive ectoderm | 1.81e-14 | 95 |
neurectoderm | 2.53e-09 | 64 |
neural plate | 2.53e-09 | 64 |
presumptive neural plate | 2.53e-09 | 64 |
ecto-epithelium | 3.86e-09 | 73 |
regional part of nervous system | 1.55e-08 | 54 |
neural tube | 1.01e-07 | 52 |
neural rod | 1.01e-07 | 52 |
future spinal cord | 1.01e-07 | 52 |
neural keel | 1.01e-07 | 52 |
gray matter | 3.75e-07 | 34 |