Data source

Data sources used in FANTOM5 SSTAR

CAGE peaks

• CAGE peak location (with the robust threshold) , annotation, and expression
  • Human
  • Mouse
• Ontology-based sample term enrichment analysis
  • Human
  • Mouse

Genes

• Transcription factors (curated list)
  • Human
  • Mouse

• Gene details (obtained from EntrezGene)
  • Human and Mouse

Coexpression module

• FFCP member list
  • Human
  • Mouse
• Sample ontology enrichment analysis
  • human
  • mouse
• GOStat results on Coexpression module
  • human
  • mouse
• Pathway enrichment analysis
  • human
  • mouse
• TFBS overrepresentation
  • human_novel_motif
  • human_jaspar_motif
  • mouse_novel_motif
  • mouse_jaspar_motif
• ENCODE_TF_ChIP-seq_peak enrichment analysis
• Relative expression of the co-expression module
  • human
  • mouse

Motifs

• Novel motifs GREAT analysis results
  • Human
  • Mouse
• Novel motifs Significance of the correlation with CAGE expression
  • Human
  • Mouse
• Jaspar motifs Significance of the correlation with CAGE expression
  • Human
  • Mouse

Sample

• sample name and attributes
  • Human
  • Mouse
• Transcription factors, relative expression
• HOMER motifs
• Repeat family, relative expression
  • human
  • mouse

Ontology

• Sample ontology(FF), Cell ontology(CL), Human disease ontology(DOID) and Uber anatomy ontology (UBERON)
• Ontology mapping: FF sample <--> CL, DOID, UBERON, FF term

CAGEd-oPOSSUM

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs The CAGEd-oPOSSUM resource developed at Wyeth W. Wasserman's lab , Centre for Molecular Medicine and Therapeutics at The University of British Columbia, CA. a member of FANTOM5 consortium.

• Pre-computed Analysis Results (Human & Mouse)
• Human precomputed results
• Mouse precomputed results