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Template:FFCP others: Difference between revisions

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<tr><th scope="row" align="right">Ensembl_transcript_id:</th><td>{{{ensembl_transcript_id}}}</td></tr>
<tr><th scope="row" align="right">Ensembl_transcript_id:</th><td>{{{ensembl_transcript_id}}}</td></tr>
{{#ifeq:{{{species}}}|Gallus gallus||<tr><th scope="row" align="right">Ensembl_gene_id:</th><td>{{{ensembl_gene_id}}}</td></tr>}}
{{#ifeq:{{{species}}}|Gallus gallus||<tr><th scope="row" align="right">Ensembl_gene_id:</th><td>{{{ensembl_gene_id}}}</td></tr>}}
<tr><th scope="row" align="right">Ensembl_gene_name:</th><td>{{{ensembl_gene_name}}}</td></tr>
{{#if:{{{ensembl_gene_name|}}}|<tr><th scope="row" align="right">Ensembl_gene_name:</th><td>{{{ensembl_gene_name}}}</td></tr>|}}
<tr><th scope="row" align="right">Augustus_gene_name:</th><td>{{{augustus_gene_name}}}</td></tr>
<tr><th scope="row" align="right">Augustus_gene_name:</th><td>{{{augustus_gene_name}}}</td></tr>
<tr><th scope="row" align="right">RefSeq_transcript_id:</th><td>{{{refseq_transcript_id}}}</td></tr>
<tr><th scope="row" align="right">RefSeq_transcript_id:</th><td>{{{refseq_transcript_id}}}</td></tr>

Revision as of 14:56, 13 September 2018


CAGE_peaks_ID:{{{cage_peaks_id}}}
Chr:{{{chromosome}}}
Start:{{{start}}}
End:{{{end}}}
Score:{{{score}}}
Strand:{{{strand}}}
Ensembl_transcript_id:{{{ensembl_transcript_id}}}
Ensembl_gene_id:{{{ensembl_gene_id}}}
Augustus_gene_name:{{{augustus_gene_name}}}
RefSeq_transcript_id:{{{refseq_transcript_id}}}
Genscan_gene_name:{{{genscan_gene_name}}}
EST_gene_name:{{{est_gene_name}}}


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression







  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data


Cell type
Ontology termp-valuen


Uber anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen






"FFCP others" is not a number.

Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Cage peaks id" (as page type) with input value "{{{cage_peaks_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Start" (as page type) with input value "{{{start}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "End" (as page type) with input value "{{{end}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Score" (as page type) with input value "{{{score}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Ensembl transcript id" (as page type) with input value "{{{ensembl_transcript_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Ensembl gene id" (as page type) with input value "{{{ensembl_gene_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Ensembl gene name" (as page type) with input value "{{{ensembl_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Augustus gene name" (as page type) with input value "{{{augustus_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Refseq transcript id" (as page type) with input value "{{{refseq_transcript_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Genscan gene name" (as page type) with input value "{{{genscan_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Est gene name" (as page type) with input value "{{{est_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Aldb lincRNA" (as page type) with input value "{{{aldb_lincRNA}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Noncode" (as page type) with input value "{{{noncode}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.