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{{Fontsize|3|CAGE Expression}}
{{Fontsize|3|CAGE Expression}}
----
----
<html><script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<html><script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
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*Click each plot point to find sample in table
*Click each plot point to find sample in table
<br>
{{Fontsize|3| Ontology-based sample term enrichment analysis}}{{#info:<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji
<br><br>link to source dataset<br>
[http://fantom.gsc.riken.jp/5/datafiles/latest/extra/Sample_ontology_enrichment_of_CAGE_peaks/ data]
}}
----
<html>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>


<style type="text/css" title="currentStyle">
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
.table_title{
text-align:left;
font-size:small;
text-decoration:underline;
color:darkgoldenrod;
}
</style>
<script type="text/javascript">
$(document).ready(function() {
    var oTable =  $('.enrichment_list').DataTable({
        dom: 'frtip',
scrollCollapse: false,
        columnDefs: [{ orderable: false, targets: [ 0 ] },  { type: "html-num", width: "50pt", targets: [1] }],
order: [[ 1, "asc" ]]
});
});
</script>
</html>
{{#if:{{{ontology_enrichment_celltype_v019_2}}}|
<div style="float:left;width:33%;">
<table class="enrichment_list stripe cell-border order-column compact"><caption class="table_title">Cell type</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html>
{{#arraymap:{{{ontology_enrichment_celltype_v019_2}}}|;|$
|{{#set:ffcp_ontology_enrichment_celltype={{#replace:$|,|;}}}}{{#ifexist:{{#explode:$|,|0}}|<tr><td>[[{{#explode:$|,|0}}|{{#show:{{#explode:$|,|0}}|?name}}]]</td><td>{{#explode:$|,|1}}</td><td>{{#explode:$|,|2}}</td></tr>| }}
|}}
<html></tbody></html></table>
</div>
}}{{#if:{{{ontology_enrichment_uberon_v019_2}}}|
<div style="float:left;width:33%;">
<table class="enrichment_list stripe cell-border order-column compact"><caption class="table_title">Uber anatomy</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html>
{{#arraymap:{{{ontology_enrichment_uberon_v019_2}}}|;|$
|{{#set:ffcp_ontology_enrichment_uberon={{#replace:$|,|;}}}}{{#ifexist:{{#explode:$|,|0}}|<tr><td>[[{{#explode:$|,|0}}|{{#show:{{#explode:$|,|0}}|?name}}]]</td><td>{{#explode:$|,|1}}</td><td>{{#explode:$|,|2}}</td></tr>| }}
|}}
<html></tbody></html></table>
</div>
}}{{#if:{{{ontology_enrichment_disease_v019_2}}}|
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption class="table_title">Disease</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html>
{{#arraymap:{{{ontology_enrichment_disease_v019_2}}}|;|$
|{{#set:ffcp_ontology_enrichment_disease={{#replace:$|,|;}}}}{{#ifexist:{{#explode:$|,|0}}|<tr><td>[[{{#explode:$|,|0}}|{{#show:{{#explode:$|,|0}}|?name}}]]</td><td>{{#explode:$|,|1}}</td><td>{{#explode:$|,|2}}</td></tr>| }}
|}}
<html></tbody></html></table>
</div>
}}
<div style="clear:both;"></div>
<!--
{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0
|<html>
|}}
-->
{{#arraymap:{{{short_description}}}|,|$|{{#set:short_description=$}}}}
{{#arraymap:{{{short_description}}}|,|$|{{#set:short_description=$}}}}
{{#arraymap:{{{description}}}|,|$|{{#set:description=$}}}}
{{#arraymap:{{{description}}}|,|$|{{#set:description=$}}}}
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{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}}
{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}}
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}}
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}}
{{#set:dpi_dataset={{{DPIdataset}}}}}
{{#set:TSS_like_by_RIKEN_classifier={{{TSSclassifier}}}}}
<!--{{#set:GencodeV16b_All_Build2_RSEM10_CPAT_consensus={{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}}}}-->{{#set:DHS_support={{{DHSsupport}}}}}


{{#set:cage_peaks_id={{{cage_peaks_id}}}}}
{{#set:cage_peaks_id={{{cage_peaks_id}}}}}
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{{#set:score={{{score}}}}}
{{#set:score={{{score}}}}}
{{#set:strand={{{strand}}}}}
{{#set:strand={{{strand}}}}}
{{#set:ensembl_transcript_id={{{ensembl_transcript_id}}}}}
{{#set:ensembl_transcript_id={{{ensembl_transcript_id|}}}}}
{{#set:ensembl_gene_id={{{ensembl_gene_id}}}}}
{{#set:ensembl_gene_id={{{ensembl_gene_id}}}}}
{{#set:ensembl_gene_name={{{ensembl_gene_name}}}}}
{{#set:ensembl_gene_name={{{ensembl_gene_name}}}}}
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{{#set:genscan_gene_name={{{genscan_gene_name}}}}}
{{#set:genscan_gene_name={{{genscan_gene_name}}}}}
{{#set:est_gene_name={{{est_gene_name}}}}}
{{#set:est_gene_name={{{est_gene_name}}}}}
{{#set:aldb_lincRNA={{{aldb_lincRNA}}}}}
{{#set:noncode={{{noncode}}}}}
{{#set:species={{{species}}}}}
{{#set:species={{{species}}}}}


[[Category:FFCP]]
[[Category:FFCP]]

Latest revision as of 13:07, 25 January 2019


CAGE_peaks_ID:{{{cage_peaks_id}}}
Chr:{{{chromosome}}}
Start:{{{start}}}
End:{{{end}}}
Score:{{{score}}}
Strand:{{{strand}}}
Ensembl_transcript_id:{{{ensembl_transcript_id}}}
Augustus_gene_name:{{{augustus_gene_name}}}
RefSeq_transcript_id:{{{refseq_transcript_id}}}
Genscan_gene_name:{{{genscan_gene_name}}}
EST_gene_name:{{{est_gene_name}}}


CAGE Expression






  • Click each plot point to find sample in table






"FFCP others" is not a number.


Property "Cage peaks id" (as page type) with input value "{{{cage_peaks_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Start" (as page type) with input value "{{{start}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "End" (as page type) with input value "{{{end}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Score" (as page type) with input value "{{{score}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.


Property "Ensembl gene id" (as page type) with input value "{{{ensembl_gene_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Ensembl gene name" (as page type) with input value "{{{ensembl_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Augustus gene name" (as page type) with input value "{{{augustus_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Refseq transcript id" (as page type) with input value "{{{refseq_transcript_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Genscan gene name" (as page type) with input value "{{{genscan_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Est gene name" (as page type) with input value "{{{est_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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