FF:10034-101E7: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	parietal lobe, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10641
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	parietal lobe
dev stage	35-89 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	636571
catalog number	Cat:636571
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005014

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10641		CAGE		DRX008702		DRR009574

Accession ID Hg19

Library id		BAM		CTSS
CNhs10641		DRZ000999		DRZ002384

Accession ID Hg38

Library id		BAM		CTSS
CNhs10641		DRZ012349		DRZ013734

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.331
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.136
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.368
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0519
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.12
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.529
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0267
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.14
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.11
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.14
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.14
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0267
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.029
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.243
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0267
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0756
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.179
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.965
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0267
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0741
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.586
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0267
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0267
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.64
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0148
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.331
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0267
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.125
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.368
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0267
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.311
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.238
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.559
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.453
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.682
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0267
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.129
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.12
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0267
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.725
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0982
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.14
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.433
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0267
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.16
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0267
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10641

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00839
MA0003.1	MA0003.1	0.383
MA0004.1	MA0004.1	0.481
MA0006.1	MA0006.1	0.393
MA0007.1	MA0007.1	0.218
MA0009.1	MA0009.1	0.247
MA0014.1	MA0014.1	0.694
MA0017.1	MA0017.1	0.00361
MA0018.2	MA0018.2	0.0422
MA0019.1	MA0019.1	0.705
MA0024.1	MA0024.1	0.968
MA0025.1	MA0025.1	0.171
MA0027.1	MA0027.1	0.519
MA0028.1	MA0028.1	0.108
MA0029.1	MA0029.1	0.167
MA0030.1	MA0030.1	0.0993
MA0031.1	MA0031.1	0.812
MA0035.2	MA0035.2	0.141
MA0038.1	MA0038.1	0.0379
MA0039.2	MA0039.2	0.277
MA0040.1	MA0040.1	0.361
MA0041.1	MA0041.1	0.161
MA0042.1	MA0042.1	0.597
MA0043.1	MA0043.1	0.314
MA0046.1	MA0046.1	0.0925
MA0047.2	MA0047.2	0.146
MA0048.1	MA0048.1	0.105
MA0050.1	MA0050.1	0.00307
MA0051.1	MA0051.1	0.0724
MA0052.1	MA0052.1	0.0587
MA0055.1	MA0055.1	0.00375
MA0057.1	MA0057.1	0.948
MA0058.1	MA0058.1	0.449
MA0059.1	MA0059.1	0.0794
MA0060.1	MA0060.1	0.179
MA0061.1	MA0061.1	0.00904
MA0062.2	MA0062.2	0.0277
MA0065.2	MA0065.2	5.6965e-4
MA0066.1	MA0066.1	0.0291
MA0067.1	MA0067.1	0.687
MA0068.1	MA0068.1	0.37
MA0069.1	MA0069.1	0.517
MA0070.1	MA0070.1	0.0492
MA0071.1	MA0071.1	0.0399
MA0072.1	MA0072.1	0.52
MA0073.1	MA0073.1	0.368
MA0074.1	MA0074.1	0.18
MA0076.1	MA0076.1	0.27
MA0077.1	MA0077.1	0.177
MA0078.1	MA0078.1	0.874
MA0079.2	MA0079.2	0.375
MA0080.2	MA0080.2	6.0115e-8
MA0081.1	MA0081.1	0.0613
MA0083.1	MA0083.1	0.163
MA0084.1	MA0084.1	0.606
MA0087.1	MA0087.1	0.327
MA0088.1	MA0088.1	0.144
MA0090.1	MA0090.1	0.264
MA0091.1	MA0091.1	0.415
MA0092.1	MA0092.1	0.386
MA0093.1	MA0093.1	0.521
MA0099.2	MA0099.2	2.45716e-10
MA0100.1	MA0100.1	0.69
MA0101.1	MA0101.1	0.00595
MA0102.2	MA0102.2	0.172
MA0103.1	MA0103.1	0.22
MA0104.2	MA0104.2	0.428
MA0105.1	MA0105.1	3.64246e-4
MA0106.1	MA0106.1	0.0305
MA0107.1	MA0107.1	0.00959
MA0108.2	MA0108.2	0.318
MA0111.1	MA0111.1	0.432
MA0112.2	MA0112.2	0.00104
MA0113.1	MA0113.1	0.297
MA0114.1	MA0114.1	0.00409
MA0115.1	MA0115.1	0.342
MA0116.1	MA0116.1	0.00304
MA0117.1	MA0117.1	0.946
MA0119.1	MA0119.1	0.0489
MA0122.1	MA0122.1	0.869
MA0124.1	MA0124.1	0.704
MA0125.1	MA0125.1	0.253
MA0131.1	MA0131.1	0.927
MA0135.1	MA0135.1	0.0158
MA0136.1	MA0136.1	7.19597e-10
MA0137.2	MA0137.2	0.504
MA0138.2	MA0138.2	0.171
MA0139.1	MA0139.1	0.394
MA0140.1	MA0140.1	0.016
MA0141.1	MA0141.1	0.0159
MA0142.1	MA0142.1	0.82
MA0143.1	MA0143.1	0.795
MA0144.1	MA0144.1	0.278
MA0145.1	MA0145.1	0.251
MA0146.1	MA0146.1	0.0132
MA0147.1	MA0147.1	0.295
MA0148.1	MA0148.1	0.127
MA0149.1	MA0149.1	0.0157
MA0150.1	MA0150.1	0.00381
MA0152.1	MA0152.1	0.981
MA0153.1	MA0153.1	0.389
MA0154.1	MA0154.1	0.0392
MA0155.1	MA0155.1	0.696
MA0156.1	MA0156.1	2.19848e-5
MA0157.1	MA0157.1	0.724
MA0159.1	MA0159.1	0.00566
MA0160.1	MA0160.1	0.0509
MA0162.1	MA0162.1	0.119
MA0163.1	MA0163.1	1.42459e-6
MA0164.1	MA0164.1	0.754
MA0258.1	MA0258.1	0.0115
MA0259.1	MA0259.1	0.724

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10641

Novel motif	Logo	P-value
1	1	0.0314
10	10	0.0228
100	100	0.256
101	101	0.914
102	102	0.784
103	103	0.182
104	104	0.183
105	105	0.348
106	106	0.0595
107	107	0.126
108	108	0.829
109	109	0.00959
11	11	0.0143
110	110	0.0385
111	111	0.063
112	112	0.289
113	113	0.666
114	114	0.0835
115	115	0.918
116	116	0.18
117	117	0.00892
118	118	0.0963
119	119	0.104
12	12	0.799
120	120	0.13
121	121	0.682
122	122	0.549
123	123	0.619
124	124	0.0302
125	125	0.153
126	126	0.0324
127	127	0.484
128	128	0.154
129	129	0.544
13	13	0.00135
130	130	0.551
131	131	0.0619
132	132	0.716
133	133	0.00304
134	134	0.259
135	135	0.15
136	136	0.0103
137	137	0.794
138	138	0.822
139	139	0.0699
14	14	0.898
140	140	0.141
141	141	0.221
142	142	0.896
143	143	0.0151
144	144	0.805
145	145	0.0786
146	146	0.664
147	147	0.976
148	148	0.142
149	149	0.293
15	15	0.0757
150	150	0.184
151	151	0.663
152	152	0.155
153	153	0.741
154	154	0.602
155	155	0.366
156	156	0.484
157	157	0.431
158	158	0.788
159	159	0.0722
16	16	0.067
160	160	0.194
161	161	0.189
162	162	0.965
163	163	0.929
164	164	0.0161
165	165	0.0265
166	166	0.773
167	167	0.304
168	168	0.694
169	169	0.00772
17	17	0.161
18	18	0.186
19	19	0.208
2	2	0.989
20	20	0.097
21	21	0.0816
22	22	0.271
23	23	0.463
24	24	0.109
25	25	0.482
26	26	7.12615e-5
27	27	0.969
28	28	0.7
29	29	0.00977
3	3	0.0247
30	30	0.592
31	31	0.907
32	32	0.0266
33	33	0.0718
34	34	0.836
35	35	0.473
36	36	0.0901
37	37	0.0396
38	38	0.324
39	39	0.264
4	4	0.977
40	40	0.0589
41	41	0.457
42	42	0.168
43	43	0.106
44	44	0.0782
45	45	0.828
46	46	0.0455
47	47	0.0608
48	48	0.0534
49	49	0.137
5	5	0.465
50	50	0.371
51	51	0.514
52	52	0.627
53	53	0.916
54	54	0.506
55	55	0.351
56	56	0.477
57	57	0.23
58	58	0.297
59	59	0.134
6	6	0.562
60	60	0.0792
61	61	0.0648
62	62	0.163
63	63	0.17
64	64	0.21
65	65	0.29
66	66	0.311
67	67	0.33
68	68	0.377
69	69	0.381
7	7	0.0611
70	70	0.0211
71	71	0.00733
72	72	0.468
73	73	0.0508
74	74	0.655
75	75	0.0293
76	76	0.363
77	77	0.231
78	78	0.00291
79	79	0.172
8	8	0.0463
80	80	0.989
81	81	0.532
82	82	0.446
83	83	0.163
84	84	0.63
85	85	0.232
86	86	0.211
87	87	0.00851
88	88	0.867
89	89	0.531
9	9	0.544
90	90	0.0326
91	91	0.435
92	92	0.464
93	93	0.701
94	94	0.0573
95	95	0.0291
96	96	0.965
97	97	0.774
98	98	0.196
99	99	0.784

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10641

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010034 human parietal lobe - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010034 (human parietal lobe - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008593
+|DRA_sample_Accession=CAGE@SAMD00005014
+|accession_numbers=CAGE;DRX008702;DRR009574;DRZ000999;DRZ002384;DRZ012349;DRZ013734
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001872,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.56!363.06!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.39!244.28!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.32!209.34!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.19!154.54!SOX10;;chr17:53342311..53342400,+!p1@HLF!2.08!136.28!HLF;;chr11:61520075..61520136,+!p1@C11orf9!1.99!199.63!C11orf9;;chr9:77112244..77112262,+!p1@RORB!1.94!96.14!RORB;;chr9:114287433..114287513,+!p1@ZNF483!1.91!199.57!ZNF483;;chr21:34398234..34398250,+!p1@OLIG2!1.91!80.79!OLIG2;;chr10:64134120..64134183,+!p1@ZNF365!1.86!85.29!ZNF365;;chr4:57547454..57547469,-!p1@HOPX!1.83!66.84!HOPX;;chr17:37764128..37764258,-!p1@NEUROD2!1.82!65.45!NEUROD2;;chr2:162272785..162272836,+!p1@TBR1!1.77!58.34!TBR1;;chr14:29235961..29236008,+!p1@FOXG1!1.77!57.96!FOXG1;;chr15:80733570..80733659,+!p2@ARNT2!1.76!56.88!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.73!52.57!SOX2;;chr2:2334997..2335053,-!p1@MYT1L!1.73!52.32!MYT1L;;chr2:145277882..145277967,-!p3@ZEB2!1.72!86.88!ZEB2;;chr2:95963052..95963106,+!p1@KCNIP3!1.69!47.82!KCNIP3;;chr2:166326200..166326216,+!p1@CSRNP3!1.68!68.11!CSRNP3;;chr5:88178983..88179012,-!p1@MEF2C!1.67!337.12!MEF2C;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.85!ZMAT4;;chr8:53322304..53322340,-!p1@ST18!1.67!45.72!ST18;;chr4:81118647..81118666,+!p1@PRDM8!1.65!56.76!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.65!43.69!POU3F3;;chr15:80735246..80735321,+!p3@ARNT2!1.64!43.12!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!1.61!40.21!NFIX;;chr21:34442540..34442560,+!p2@OLIG1!1.58!37.23!OLIG1;;chr19:13135582..13135600,+!p3@NFIX!1.54!33.61!NFIX;;chr16:1031762..1031781,+!p1@SOX8!1.53!33.10!SOX8;;chr12:26277817..26277863,-!p2@BHLHE41!1.52!42.62!BHLHE41;;chr22:41763452..41763466,+!p2@TEF!1.52!32.34!TEF;;chr18:53070846..53070902,-!p6@TCF4!1.51!31.33!TCF4;;chr10:134599649..134599653,-!p1@NKX6-2!1.51!31.33!NKX6-2;;chr7:31380292..31380351,-!p1@NEUROD6!1.50!30.63!NEUROD6;;chr2:60781201..60781258,-!p3@BCL11A!1.49!29.68!BCL11A;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.48!28.85!SMARCE1;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.92!ARNT2;;chr2:95963120..95963136,+!p2@KCNIP3!1.46!28.09!KCNIP3;;chr3:181429741..181429767,+!p2@SOX2!1.46!27.59!SOX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.42!36.34!ZBTB16;;chr11:125034640..125034655,+!p1@PKNOX2!1.41!24.99!PKNOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.41!24.86!ZIM2;;chr14:29236269..29236285,+!p3@FOXG1!1.41!24.54!FOXG1;;chr14:29234581..29234601,+!p2@FOXG1!1.40!23.91!FOXG1;;chr5:88179017..88179046,-!p2@MEF2C!1.39!91.26!MEF2C;;chr12:54779511..54779577,-!p5@ZNF385A!1.37!22.26!ZNF385A;;chr2:162272889..162272915,+!p2@TBR1!1.37!22.26!TBR1;;chrX:25034067..25034088,-!p1@ARX!1.36!21.69!ARX;;chr1:151032860..151032918,+!p1@MLLT11!1.35!248.40!MLLT11;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.32!19.91!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.47!HIF3A;;chr12:106976774..106976788,+!p1@RFX4!1.31!19.28!RFX4;;chr11:8102846..8102892,+!p1@TUB!1.30!26.38!TUB;;chr8:145560371..145560449,-!p1@SCRT1!1.30!19.02!SCRT1;;chr19:38720294..38720348,-!p1@DPF1!1.28!22.26!DPF1;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.55!HOPX;;chr1:214161272..214161322,+!p1@PROX1!1.27!24.73!PROX1;;chr14:33403881..33403924,+!p1@NPAS3!1.26!17.19!NPAS3;;chr1:244214577..244214593,+!p1@ZNF238!1.26!17.00!ZNF238;;chr10:48355030..48355090,+!p1@ZNF488!1.25!21.43!ZNF488;;chr12:106976678..106976708,+!p2@RFX4!1.25!16.74!RFX4;;chr17:7492684..7492778,-!p2@SOX15!1.24!34.69!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.24!25.30!ZNF385A;;chr10:64133862..64133884,+!p4@ZNF365!1.24!16.55!ZNF365;;chr19:38085768..38085821,+!p1@ZNF540!1.23!23.65!ZNF540;;chr6:15401104..15401166,+!p5@JARID2!1.23!16.11!JARID2;;chr7:63505799..63505904,+!p1@ZNF727!1.22!15.66!ZNF727;;chr19:30863271..30863338,+!p1@ZNF536!1.22!15.66!ZNF536;;chr8:53322347..53322378,-!p2@ST18!1.18!14.21!ST18;;chr2:166428839..166428859,+!p2@CSRNP3!1.18!14.14!CSRNP3;;chrX:85969626..85969664,+!p1@DACH2!1.18!14.14!DACH2;;chr9:126774018..126774055,+!p1@LHX2!1.18!14.01!LHX2;;chr6:19837592..19837621,+!p1@ID4!1.17!84.41!ID4;;chr1:151032922..151032951,+!p2@MLLT11!1.17!23.08!MLLT11;;chrX:118739835..118739862,-!p1@NKRF!1.17!15.09!NKRF;;chr8:145560111..145560165,-!p2@SCRT1!1.17!13.63!SCRT1;;chr12:26277956..26277980,-!p1@BHLHE41!1.16!48.70!BHLHE41;;chr8:22550982..22550999,-!p1@EGR3!1.16!37.54!EGR3;;chr19:46800289..46800327,+!p2@HIF3A!1.15!13.13!HIF3A;;chr3:24536253..24536328,-!p1@THRB!1.14!24.42!THRB;;chr15:31658288..31658338,+!p4@KLF13!1.13!12.62!KLF13;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.56!PKNOX2;;chr3:141105705..141105770,+!p4@ZBTB38!1.12!14.78!ZBTB38;;chr4:57522598..57522664,-!p3@HOPX!1.12!12.05!HOPX;;chr20:62680984..62680999,-!p1@SOX18!1.11!15.92!SOX18;;chrX:118739782..118739829,-!p2@NKRF!1.11!11.80!NKRF;;chr1:2461692..2461710,-!p1@HES5!1.10!11.73!HES5;;chr2:42721205..42721307,+!p4@MTA3!1.10!11.61!MTA3;;chr19:13134772..13134822,+!p2@NFIX!1.08!16.23!NFIX;;chr6:126112039..126112062,+!p8@NCOA7!1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001872;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10034-101E7
 |is_a=EFO:0002091;;FF:0010034
 |is_obsolete=
-|library_ids=CNhs10641
+|library_id=CNhs10641
+|library_id_phase_based=2:CNhs10641
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10034
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10034
 |name=parietal lobe, adult, pool1
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10641,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 62: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
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+|rna_tube_id=1.01E+09
 |rna_weight_ug=50
 |sample_age=
@@ Line 87: / Line 101: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10034-101E7;search_select_hide=table117:FF:10034-101E7
-|DRA_sample_Accession=CAGE@DRS008593
-|accession_numbers=DRX008702;DRR009574;DRZ000999;DRZ002384;CAGE
-|library_id=CNhs10641
 }}

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From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0