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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004976
|DRA_sample_Accession=CAGE@SAMD00004976
|accession_numbers=CAGE;DRX008731;DRR009603;DRZ001028;DRZ002413
|accession_numbers=CAGE;DRX008731;DRR009603;DRZ001028;DRZ002413;DRZ012378;DRZ013763
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 42: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520fetal%252c%2520pool1.CNhs10651.10044-101F8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520fetal%252c%2520pool1.CNhs10651.10044-101F8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520fetal%252c%2520pool1.CNhs10651.10044-101F8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520fetal%252c%2520pool1.CNhs10651.10044-101F8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520fetal%252c%2520pool1.CNhs10651.10044-101F8.hg38.nobarcode.ctss.bed.gz
|id=FF:10044-101F8
|id=FF:10044-101F8
|is_a=EFO:0002091;;FF:0010044
|is_a=EFO:0002091;;FF:0010044
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|library_id=CNhs10651
|library_id=CNhs10651
|library_id_phase_based=2:CNhs10651
|library_id_phase_based=2:CNhs10651
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10044
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10044
|name=spleen, fetal, pool1
|name=spleen, fetal, pool1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 91: Line 101:
|top_motifs=GATA6:3.15709699536;RBPJ:2.5130499179;TLX2:1.99413437494;ETS1,2:1.98691558232;SP1:1.87257441649;TFAP4:1.86958798187;MAZ:1.79696130892;NFATC1..3:1.77290197033;XCPE1{core}:1.74125860121;SPIB:1.62453831741;STAT1,3:1.61779143823;PATZ1:1.58739850672;TFCP2:1.56753061454;ELF1,2,4:1.53422418251;SMAD1..7,9:1.48677958321;TBP:1.46874527828;T:1.44863723126;SPZ1:1.4156143703;FOX{D1,D2}:1.4141480731;ZNF148:1.38702650452;MZF1:1.36497764945;FOX{F1,F2,J1}:1.33761231929;SPI1:1.29550493771;RREB1:1.22114094344;PRDM1:1.13609428674;STAT2,4,6:1.13200893007;EGR1..3:1.12856549297;IRF7:1.10154563013;GTF2A1,2:1.09468862366;MTE{core}:1.07651226692;SOX{8,9,10}:1.03746869263;POU5F1:1.01370685048;NANOG{mouse}:1.00837969251;SOX5:1.00614945809;POU2F1..3:0.984375373238;RXRA_VDR{dimer}:0.976897579959;MYFfamily:0.966153008531;IRF1,2:0.965184527168;MED-1{core}:0.947967222972;PAX6:0.916224276226;HMX1:0.90907257011;EP300:0.874343405479;FOX{I1,J2}:0.850652282401;GTF2I:0.850188233196;SRF:0.820004149373;HIC1:0.814470084921;TFAP2{A,C}:0.80902867725;BREu{core}:0.80255557462;TGIF1:0.774802581704;SREBF1,2:0.753301362001;HSF1,2:0.739882229268;HIF1A:0.738400086619;PAX5:0.732293862873;TLX1..3_NFIC{dimer}:0.715993457918;HAND1,2:0.686750693808;IKZF1:0.68421763278;ZNF238:0.681327145403;MAFB:0.669585828606;ZFP161:0.655233597687;NR5A1,2:0.648344159676;TFAP2B:0.646630399843;ZNF423:0.645337955534;RUNX1..3:0.62653454701;FOXO1,3,4:0.604383936668;GCM1,2:0.599458393323;ATF2:0.556745919999;HNF4A_NR2F1,2:0.545288813212;RXR{A,B,G}:0.526376126927;HNF1A:0.52326549844;NKX2-1,4:0.498559360111;MTF1:0.473951211822;HES1:0.472757668152;ESR1:0.439565042438;GZF1:0.407926551586;NFY{A,B,C}:0.403129465092;PBX1:0.390296169057;SOX2:0.369297810769;NFKB1_REL_RELA:0.345638367611;EBF1:0.336509153522;MEF2{A,B,C,D}:0.331074424608;MYBL2:0.318222909099;CUX2:0.271803968382;CEBPA,B_DDIT3:0.269729322012;HBP1_HMGB_SSRP1_UBTF:0.265103371225;GFI1:0.221695277627;FOXA2:0.203959447668;NHLH1,2:0.187912644615;GATA4:0.162174047562;TOPORS:0.148763269579;AR:0.129269388398;GLI1..3:0.124715032076;FOXP3:0.112853836175;MYOD1:0.0930680001625;bHLH_family:0.0711855104963;JUN:0.0573008595514;GFI1B:0.0530089158194;EN1,2:0.0488642033411;LEF1_TCF7_TCF7L1,2:0.0392757906158;TBX4,5:0.0221187365668;RORA:0.00898011145339;IKZF2:0.00222045661355;LMO2:-0.00112705530957;REST:-0.00387786404238;NANOG:-0.00456937569874;ZNF143:-0.0139447715296;DMAP1_NCOR{1,2}_SMARC:-0.0290487668505;PAX2:-0.0378606477269;BPTF:-0.0478416829652;FOXN1:-0.0480232702204;PAX1,9:-0.0762036829032;PAX3,7:-0.0799916496728;E2F1..5:-0.0846821830264;TEAD1:-0.12328039942;CREB1:-0.12826429633;ATF4:-0.139977640938;NFIL3:-0.151475103639;TAL1_TCF{3,4,12}:-0.163775580657;NKX3-2:-0.182598876043;NR3C1:-0.255489210476;NR6A1:-0.257714343611;ZEB1:-0.263079240887;NR1H4:-0.297383670974;NFE2L2:-0.304768300787;MYB:-0.319661299008;SOX17:-0.319826418555;SNAI1..3:-0.321857238699;OCT4_SOX2{dimer}:-0.354356783851;ZIC1..3:-0.355116844279;ATF5_CREB3:-0.358006493515;VSX1,2:-0.372903284259;KLF4:-0.376040374455;PPARG:-0.413058009803;AHR_ARNT_ARNT2:-0.440254516345;NRF1:-0.442212836848;HLF:-0.459574747326;HOX{A6,A7,B6,B7}:-0.469487698887;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.476222860534;NFE2:-0.496941697615;ADNP_IRX_SIX_ZHX:-0.507761906387;PRRX1,2:-0.508887899807;XBP1:-0.50940339432;ZNF384:-0.515833649581;DBP:-0.51952018638;NKX3-1:-0.547163362464;FOXD3:-0.547810785051;ATF6:-0.553813596134;FOXP1:-0.564381693353;NKX2-3_NKX2-5:-0.596329163545;RFX2..5_RFXANK_RFXAP:-0.642462985378;STAT5{A,B}:-0.657769866501;TFDP1:-0.698467305417;HMGA1,2:-0.70204615577;FOSL2:-0.705234274174;POU1F1:-0.719327683336;FOS_FOS{B,L1}_JUN{B,D}:-0.722162261526;CRX:-0.774753615145;NFIX:-0.783708090326;POU6F1:-0.811975406538;FOXL1:-0.814556870953;BACH2:-0.822863114962;ZBTB6:-0.888138753887;FOXQ1:-0.893952661941;ELK1,4_GABP{A,B1}:-0.89412333105;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.944580335096;ALX4:-0.982465477337;PDX1:-0.992693269043;POU3F1..4:-1.01565582055;YY1:-1.02187057782;CDC5L:-1.04666998941;TP53:-1.05289370954;FOXM1:-1.07166870012;RFX1:-1.07183921643;ESRRA:-1.11699713124;HOXA9_MEIS1:-1.12147919211;NFE2L1:-1.14781906189;LHX3,4:-1.28046906439;PITX1..3:-1.2885529525;ALX1:-1.29095874784;ARID5B:-1.30200599075;CDX1,2,4:-1.33026352619;HOX{A5,B5}:-1.35212367657;NKX6-1,2:-1.36925494063;AIRE:-1.38523199193;UFEwm:-1.41322743266;HOX{A4,D4}:-1.50311702418;EVI1:-1.56376904173;PAX8:-1.72921814983;PAX4:-1.94116937682;TEF:-1.99287977518;NKX2-2,8:-2.1807833262;ONECUT1,2:-2.36414750686;ZBTB16:-2.74449639513
|top_motifs=GATA6:3.15709699536;RBPJ:2.5130499179;TLX2:1.99413437494;ETS1,2:1.98691558232;SP1:1.87257441649;TFAP4:1.86958798187;MAZ:1.79696130892;NFATC1..3:1.77290197033;XCPE1{core}:1.74125860121;SPIB:1.62453831741;STAT1,3:1.61779143823;PATZ1:1.58739850672;TFCP2:1.56753061454;ELF1,2,4:1.53422418251;SMAD1..7,9:1.48677958321;TBP:1.46874527828;T:1.44863723126;SPZ1:1.4156143703;FOX{D1,D2}:1.4141480731;ZNF148:1.38702650452;MZF1:1.36497764945;FOX{F1,F2,J1}:1.33761231929;SPI1:1.29550493771;RREB1:1.22114094344;PRDM1:1.13609428674;STAT2,4,6:1.13200893007;EGR1..3:1.12856549297;IRF7:1.10154563013;GTF2A1,2:1.09468862366;MTE{core}:1.07651226692;SOX{8,9,10}:1.03746869263;POU5F1:1.01370685048;NANOG{mouse}:1.00837969251;SOX5:1.00614945809;POU2F1..3:0.984375373238;RXRA_VDR{dimer}:0.976897579959;MYFfamily:0.966153008531;IRF1,2:0.965184527168;MED-1{core}:0.947967222972;PAX6:0.916224276226;HMX1:0.90907257011;EP300:0.874343405479;FOX{I1,J2}:0.850652282401;GTF2I:0.850188233196;SRF:0.820004149373;HIC1:0.814470084921;TFAP2{A,C}:0.80902867725;BREu{core}:0.80255557462;TGIF1:0.774802581704;SREBF1,2:0.753301362001;HSF1,2:0.739882229268;HIF1A:0.738400086619;PAX5:0.732293862873;TLX1..3_NFIC{dimer}:0.715993457918;HAND1,2:0.686750693808;IKZF1:0.68421763278;ZNF238:0.681327145403;MAFB:0.669585828606;ZFP161:0.655233597687;NR5A1,2:0.648344159676;TFAP2B:0.646630399843;ZNF423:0.645337955534;RUNX1..3:0.62653454701;FOXO1,3,4:0.604383936668;GCM1,2:0.599458393323;ATF2:0.556745919999;HNF4A_NR2F1,2:0.545288813212;RXR{A,B,G}:0.526376126927;HNF1A:0.52326549844;NKX2-1,4:0.498559360111;MTF1:0.473951211822;HES1:0.472757668152;ESR1:0.439565042438;GZF1:0.407926551586;NFY{A,B,C}:0.403129465092;PBX1:0.390296169057;SOX2:0.369297810769;NFKB1_REL_RELA:0.345638367611;EBF1:0.336509153522;MEF2{A,B,C,D}:0.331074424608;MYBL2:0.318222909099;CUX2:0.271803968382;CEBPA,B_DDIT3:0.269729322012;HBP1_HMGB_SSRP1_UBTF:0.265103371225;GFI1:0.221695277627;FOXA2:0.203959447668;NHLH1,2:0.187912644615;GATA4:0.162174047562;TOPORS:0.148763269579;AR:0.129269388398;GLI1..3:0.124715032076;FOXP3:0.112853836175;MYOD1:0.0930680001625;bHLH_family:0.0711855104963;JUN:0.0573008595514;GFI1B:0.0530089158194;EN1,2:0.0488642033411;LEF1_TCF7_TCF7L1,2:0.0392757906158;TBX4,5:0.0221187365668;RORA:0.00898011145339;IKZF2:0.00222045661355;LMO2:-0.00112705530957;REST:-0.00387786404238;NANOG:-0.00456937569874;ZNF143:-0.0139447715296;DMAP1_NCOR{1,2}_SMARC:-0.0290487668505;PAX2:-0.0378606477269;BPTF:-0.0478416829652;FOXN1:-0.0480232702204;PAX1,9:-0.0762036829032;PAX3,7:-0.0799916496728;E2F1..5:-0.0846821830264;TEAD1:-0.12328039942;CREB1:-0.12826429633;ATF4:-0.139977640938;NFIL3:-0.151475103639;TAL1_TCF{3,4,12}:-0.163775580657;NKX3-2:-0.182598876043;NR3C1:-0.255489210476;NR6A1:-0.257714343611;ZEB1:-0.263079240887;NR1H4:-0.297383670974;NFE2L2:-0.304768300787;MYB:-0.319661299008;SOX17:-0.319826418555;SNAI1..3:-0.321857238699;OCT4_SOX2{dimer}:-0.354356783851;ZIC1..3:-0.355116844279;ATF5_CREB3:-0.358006493515;VSX1,2:-0.372903284259;KLF4:-0.376040374455;PPARG:-0.413058009803;AHR_ARNT_ARNT2:-0.440254516345;NRF1:-0.442212836848;HLF:-0.459574747326;HOX{A6,A7,B6,B7}:-0.469487698887;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.476222860534;NFE2:-0.496941697615;ADNP_IRX_SIX_ZHX:-0.507761906387;PRRX1,2:-0.508887899807;XBP1:-0.50940339432;ZNF384:-0.515833649581;DBP:-0.51952018638;NKX3-1:-0.547163362464;FOXD3:-0.547810785051;ATF6:-0.553813596134;FOXP1:-0.564381693353;NKX2-3_NKX2-5:-0.596329163545;RFX2..5_RFXANK_RFXAP:-0.642462985378;STAT5{A,B}:-0.657769866501;TFDP1:-0.698467305417;HMGA1,2:-0.70204615577;FOSL2:-0.705234274174;POU1F1:-0.719327683336;FOS_FOS{B,L1}_JUN{B,D}:-0.722162261526;CRX:-0.774753615145;NFIX:-0.783708090326;POU6F1:-0.811975406538;FOXL1:-0.814556870953;BACH2:-0.822863114962;ZBTB6:-0.888138753887;FOXQ1:-0.893952661941;ELK1,4_GABP{A,B1}:-0.89412333105;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.944580335096;ALX4:-0.982465477337;PDX1:-0.992693269043;POU3F1..4:-1.01565582055;YY1:-1.02187057782;CDC5L:-1.04666998941;TP53:-1.05289370954;FOXM1:-1.07166870012;RFX1:-1.07183921643;ESRRA:-1.11699713124;HOXA9_MEIS1:-1.12147919211;NFE2L1:-1.14781906189;LHX3,4:-1.28046906439;PITX1..3:-1.2885529525;ALX1:-1.29095874784;ARID5B:-1.30200599075;CDX1,2,4:-1.33026352619;HOX{A5,B5}:-1.35212367657;NKX6-1,2:-1.36925494063;AIRE:-1.38523199193;UFEwm:-1.41322743266;HOX{A4,D4}:-1.50311702418;EVI1:-1.56376904173;PAX8:-1.72921814983;PAX4:-1.94116937682;TEF:-1.99287977518;NKX2-2,8:-2.1807833262;ONECUT1,2:-2.36414750686;ZBTB16:-2.74449639513
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10044-101F8;search_select_hide=table117:FF:10044-101F8
}}
}}

Latest revision as of 12:17, 3 June 2020

Name:spleen, fetal, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10651
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuespleen
dev stage12-31 weeks fetus
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3040796
catalog numberCat:636585
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004976
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10651 CAGE DRX008731 DRR009603
Accession ID Hg19

Library idBAMCTSS
CNhs10651 DRZ001028 DRZ002413
Accession ID Hg38

Library idBAMCTSS
CNhs10651 DRZ012378 DRZ013763
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.141
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood2.052811e-5
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.006
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0271
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.0271
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0227
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0.121
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.634
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0527
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0527
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0271
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.142
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.182
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.231
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0.443
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0768
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.162
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.284
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.233
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0271
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0271
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0768
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0271
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00546
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0.0768
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.492
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0533
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0271
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.233
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0768
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.251
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0271
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.578
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.123
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0271
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0.761
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.197
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0271
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0828
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.308
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0197
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.0271
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0.0271
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0271
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0414
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0.0271
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0527
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.347
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0411
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0996
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.504
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0271
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0271
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.36
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0271
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0233
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0.121
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.0271
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.233
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.53
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0768
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0271
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.181
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.00181
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0768
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0996
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10651

Jaspar motifP-value
MA0002.20.0596
MA0003.10.064
MA0004.10.786
MA0006.10.372
MA0007.10.747
MA0009.10.695
MA0014.10.48
MA0017.10.612
MA0018.20.321
MA0019.10.0288
MA0024.10.86
MA0025.10.151
MA0027.10.615
MA0028.10.0727
MA0029.10.432
MA0030.13.38285e-4
MA0031.10.0256
MA0035.28.99135e-5
MA0038.10.0611
MA0039.20.0788
MA0040.10.131
MA0041.10.15
MA0042.10.154
MA0043.10.673
MA0046.17.0815e-5
MA0047.20.0318
MA0048.10.0304
MA0050.11.09671e-8
MA0051.12.29752e-4
MA0052.12.7598e-5
MA0055.10.00456
MA0057.10.84
MA0058.10.988
MA0059.10.0154
MA0060.10.0564
MA0061.10.694
MA0062.20.534
MA0065.20.0814
MA0066.10.0785
MA0067.10.578
MA0068.13.00183e-4
MA0069.10.349
MA0070.10.252
MA0071.10.246
MA0072.10.264
MA0073.10.841
MA0074.10.383
MA0076.10.42
MA0077.10.408
MA0078.10.49
MA0079.20.0127
MA0080.25.30507e-15
MA0081.16.02527e-4
MA0083.10.13
MA0084.10.855
MA0087.10.182
MA0088.10.17
MA0090.10.702
MA0091.10.671
MA0092.10.939
MA0093.10.853
MA0099.21.32402e-7
MA0100.10.663
MA0101.10.202
MA0102.20.372
MA0103.10.108
MA0104.20.0275
MA0105.10.00428
MA0106.10.00833
MA0107.10.115
MA0108.22.22834e-14
MA0111.10.62
MA0112.20.0941
MA0113.10.907
MA0114.10.166
MA0115.10.233
MA0116.10.0567
MA0117.10.58
MA0119.10.0623
MA0122.10.069
MA0124.10.988
MA0125.10.4
MA0131.10.663
MA0135.10.0587
MA0136.14.00606e-14
MA0137.21.13006e-6
MA0138.20.377
MA0139.10.0996
MA0140.12.29674e-6
MA0141.10.269
MA0142.10.947
MA0143.10.507
MA0144.10.00312
MA0145.10.399
MA0146.10.796
MA0147.10.0206
MA0148.10.602
MA0149.10.179
MA0150.10.016
MA0152.10.982
MA0153.10.228
MA0154.10.694
MA0155.10.133
MA0156.17.46699e-13
MA0157.10.261
MA0159.10.223
MA0160.10.425
MA0162.10.34
MA0163.11.55949e-4
MA0164.10.505
MA0258.10.129
MA0259.10.0892



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10651

Novel motifP-value
10.0127
100.0166
1000.0303
1010.718
1020.768
1030.336
1040.518
1050.1
1060.854
1070.648
1080.442
1090.12
110.25
1100.286
1110.0481
1120.846
1130.15
1140.031
1150.789
1160.104
1170.032
1180.0578
1190.169
120.549
1200.219
1210.103
1220.167
1230.0372
1240.565
1250.256
1260.953
1270.974
1280.95
1290.183
130.0709
1300.274
1310.264
1320.875
1330.125
1340.344
1350.148
1360.776
1370.363
1380.915
1390.216
140.743
1400.156
1410.303
1420.508
1430.732
1440.82
1450.726
1460.352
1470.234
1480.0916
1490.654
150.0987
1500.714
1510.848
1520.234
1530.57
1540.225
1550.732
1560.476
1570.9
1580.634
1590.632
160.151
1600.95
1610.948
1620.945
1630.792
1640.0104
1650.604
1660.629
1670.00183
1680.0659
1690.617
170.637
180.2
190.719
20.177
200.141
210.463
220.603
230.708
240.702
250.655
260.0533
270.476
280.804
290.0307
30.274
300.0809
310.934
320.566
330.385
340.0501
350.243
360.199
370.165
380.929
390.94
40.617
400.319
410.905
420.451
430.41
440.364
450.192
460.177
470.121
480.317
490.254
50.317
500.427
510.879
520.435
530.64
540.788
550.347
560.872
570.0369
580.951
590.369
60.51
600.82
610.573
620.635
630.547
640.27
650.931
660.71
670.59
680.869
690.487
70.784
700.00305
710.0289
720.496
730.26
740.169
750.0429
760.0326
770.785
780.377
790.238
80.14
802.05596e-4
810.419
820.419
830.84
840.621
850.738
860.724
870.735
880.617
890.327
90.211
900.0594
910.876
920.561
930.903
940.251
950.175
960.621
970.896
980.124
990.944



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10651


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002106 (spleen)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010044 (human spleen - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)

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