FF:10157-103A4: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005804 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10028;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008701;DRR009573;DRZ000998;DRZ002383;DRZ012348;DRZ013733 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001872,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010034 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.38!238.31!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.24!171.76!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.16!159.36!RORB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.15!140.34!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.09!121.95!SOX10;;chr4:81118647..81118666,+!p1@PRDM8!1.97!119.46!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.94!97.56!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.91!SOX2;;chr9:114287433..114287513,+!p1@ZNF483!1.86!178.58!ZNF483;;chr10:64134120..64134183,+!p1@ZNF365!1.82!77.71!ZNF365;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.82!64.49!SMARCE1;;chr17:37764128..37764258,-!p1@NEUROD2!1.80!61.39!NEUROD2;;chr2:162272785..162272836,+!p1@TBR1!1.78!58.70!TBR1;;chr11:113930425..113930471,+!p1@ZBTB16!1.76!79.99!ZBTB16;;chr12:26277817..26277863,-!p2@BHLHE41!1.76!74.82!BHLHE41;;chr14:29235961..29236008,+!p1@FOXG1!1.76!56.22!FOXG1;;chr8:40755333..40755352,-!p1@ZMAT4!1.75!54.98!ZMAT4;;chr11:61520075..61520136,+!p1@C11orf9!1.73!107.27!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.43!POU3F3;;chr2:2334997..2335053,-!p1@MYT1L!1.70!48.57!MYT1L;;chr5:88178983..88179012,-!p1@MEF2C!1.69!351.16!MEF2C;;chr2:95963052..95963106,+!p1@KCNIP3!1.69!48.16!KCNIP3;;chr8:53322304..53322340,-!p1@ST18!1.69!47.74!ST18;;chr12:106976678..106976708,+!p2@RFX4!1.69!47.74!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.64!72.55!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!1.64!42.16!OLIG2;;chr15:80733570..80733659,+!p2@ARNT2!1.63!41.54!ARNT2;;chrX:25034067..25034088,-!p1@ARX!1.60!38.65!ARX;;chr19:46801639..46801699,+!p1@HIF3A!1.59!38.03!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.59!37.82!NFIX;;chr2:166326200..166326216,+!p1@CSRNP3!1.58!53.95!CSRNP3;;chr18:53070846..53070902,-!p6@TCF4!1.58!37.41!TCF4;;chr19:13135386..13135435,+!p4@NFIX!1.57!35.96!NFIX;;chr15:80735246..80735321,+!p3@ARNT2!1.54!33.48!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.52!32.45!TEF;;chr4:57547454..57547469,-!p1@HOPX!1.52!32.24!HOPX;;chr21:34442540..34442560,+!p2@OLIG1!1.52!32.24!OLIG1;;chr2:60781201..60781258,-!p3@BCL11A!1.51!31.00!BCL11A;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.38!SOX2;;chr14:29236269..29236285,+!p3@FOXG1!1.49!29.97!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!1.48!28.94!ZNF385A;;chr12:26277956..26277980,-!p1@BHLHE41!1.47!100.04!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!1.45!36.38!ARNT2;;chr10:119302232..119302265,+!p1@EMX2!1.43!26.04!EMX2;;chr8:145560111..145560165,-!p2@SCRT1!1.43!25.84!SCRT1;;chr8:53322347..53322378,-!p2@ST18!1.43!25.63!ST18;;chr7:31380292..31380351,-!p1@NEUROD6!1.42!25.22!NEUROD6;;chr8:145560371..145560449,-!p1@SCRT1!1.41!24.80!SCRT1;;chr11:8102846..8102892,+!p1@TUB!1.40!33.28!TUB;;chr16:1031762..1031781,+!p1@SOX8!1.40!23.98!SOX8;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.56!LHX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.39!23.36!PKNOX2;;chr11:31832862..31832884,-!p2@PAX6!1.39!23.36!PAX6;;chr10:48355030..48355090,+!p1@ZNF488!1.38!29.35!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.36!21.91!NKX6-2;;chr14:33403881..33403924,+!p1@NPAS3!1.35!21.50!NPAS3;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.20!SOX15;;chr15:31658288..31658338,+!p4@KLF13!1.34!20.88!KLF13;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.84!ASCL1;;chr14:29234581..29234601,+!p2@FOXG1!1.32!19.84!FOXG1;;chr12:54785074..54785122,-!p2@ZNF385A!1.31!29.56!ZNF385A;;chr6:126112039..126112062,+!p8@NCOA7!1.31!23.15!NCOA7;;chr9:77112225..77112238,+!p2@RORB!1.30!18.81!RORB;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.30!18.81!POU3F3;;chr1:61548069..61548102,+!p3@NFIA!1.29!44.23!NFIA;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.63!PROX1;;chr5:92920256..92920282,+!p7@NR2F1!1.28!21.70!NR2F1;;chr11:113930401..113930422,+!p3@ZBTB16!1.28!18.19!ZBTB16;;chr5:88179017..88179046,-!p2@MEF2C!1.27!69.45!MEF2C;;chr19:57352109..57352153,-!p2@ZIM2!1.27!17.78!ZIM2;;chr2:162272889..162272915,+!p2@TBR1!1.27!17.78!TBR1;;chr11:31832658..31832681,-!p1@PAX6!1.26!17.36!PAX6;;chr19:38085768..38085821,+!p1@ZNF540!1.25!24.80!ZNF540;;chr15:31631789..31631811,+!p13@KLF13!1.25!16.95!KLF13;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.95!HIF3A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.24!16.53!ZBED1;;chr2:2330039..2330072,-!p6@MYT1L!1.24!16.53!MYT1L;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.98!BCL11A;;chr6:15401104..15401166,+!p5@JARID2!1.23!15.91!JARID2;;chr11:47400078..47400106,-!p1@SPI1!1.23!15.91!SPI1;;chr17:38256822..38256851,-!p1@NR1D1!1.22!119.46!NR1D1;;chr14:33403648..33403710,+!p3@NPAS3!1.22!15.71!NPAS3;;chr3:126076242..126076257,-!p1@KLF15!1.21!19.02!KLF15;;chrX:118739835..118739862,-!p1@NKRF!1.21!16.74!NKRF;;chr2:162272716..162272753,+!p3@TBR1!1.21!15.29!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.21!15.09!RFX4;;chr17:70117153..70117174,+!p1@SOX9!1.20!151.91!SOX9;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.62!SATB2;;chr1:244219775..244219893,+!p2@ZNF238!1.20!20.05!ZNF238;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.67!DACH2;;chr9:3525910..3525955,-!p4@RFX3!1.19!42.78!RFX3;;chr3:141105705..141105770,+!p4@ZBTB38!1.18!17.36!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.18!16.12!HOPX;;chr7:63505799..63505904,+!p1@ZNF727!1.18!14.26!ZNF727;;chr2:2328299..2328363,-!p3@MYT1L!1.18!14.05!MYT1L;;chr16:67198633..67198671,+!p1@HSF4!1.17!13.85!HSF4;;chr9:126773880..126773895,+!p2@LHX2!1.17!13.85!LHX2;;chr9:3525867..3525902,-!p3@RFX3!1.16!46.30!RFX3;;chr16:85932760..85932775,+!p1@IRF8!1.16!13.43!IRF8;;chr2:166428839..166428859,+!p2@CSRNP3!1.16!13.43!CSRNP3;;chr2:95963120..95963136,+!p2@KCNIP3!1.16!13.43!KCNIP3;;chr14:58798013..58798071,+!p2@ARID4A!1.16!13.43!ARID4A;;chr6:143266185..143266238,-!p2@HIVEP2!1.15!17.98!HIVEP2;;chr7:73038839..73038862,-!p1@MLXIPL!1.15!13.23!MLXIPL;;chr11:125034605..125034636,+!p2@PKNOX2!1.15!13.02!PKNOX2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.30!ID4;;chr3:24536253..24536328,-!p1@THRB!1.14!24.39!THRB;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!20.88!ZBTB16;;chr19:38720294..38720348,-!p1@DPF1!1.14!16.12!DPF1;;chrX:70315688..70315709,+!p1@FOXO4!1.13!29.35!FOXO4;;chr6:28321971..28321995,-!p1@ZNF323!1.13!12.61!ZNF323;;chr17:38219209..38219230,+!p1@THRA!1.12!158.12!THRA;;chr1:8585945..8586056,-!p3@RERE!1.11!40.30!RERE;;chr3:141105235..141105307,+!p7@ZBTB38!1.11!11.99!ZBTB38;;chr14:24020938..24020988,-!p1@ZFHX2!1.10!16.53!ZFHX2;;chr8:30890810..30890880,-!p1@PURG!1.10!11.57!PURG;;chr1:151032860..151032918,+!p1@MLLT11!1.09!135.38!MLLT11;;chr12:24715376..24715432,-!p1@SOX5!1.09!14.26!SOX5;;chr14:33408072..33408114,+!p2@NPAS3!1.08!13.02!NPAS3;;chr20:42544782..42544828,+!p4@TOX2!1.08!11.16!TOX2;;chr3:21792682..21792720,-!p1@ZNF385D!1.08!11.16!ZNF385D;;chr5:178368186..178368238,+!p1@ZNF454!1.07!19.22!ZNF454;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.19!TCF4;;chr16:67198683..67198698,+!p2@HSF4!1.07!10.75!HSF4;;chr1:40105299..40105326,-!p1@HEYL!1.07!10.75!HEYL;;chr10:38265517..38265591,-!p1@ZNF25!1.06!41.13!ZNF25;;chr19:53636125..53636178,-!p1@ZNF415!1.06!29.97!ZNF415;;chr5:88179518..88179569,-!p5@MEF2C!1.06!13.85!MEF2C;;chr2:180726291..180726311,-!p1@ZNF385B!1.06!10.54!ZNF385B;;chr3:187463179..187463201,-!p2@BCL6!1.05!43.20!BCL6;;chr15:61521417..61521460,-!p2@RORA!1.05!23.15!RORA;;chr13:46549911..46549956,-!p3@ZC3H13!1.05!14.67!ZC3H13;;chr10:64134045..64134083,+!p3@ZNF365!1.05!10.33!ZNF365;;chr19:7580549..7580596,+!p3@ZNF358!1.05!10.33!ZNF358;;chr2:162273241..162273253,+!p4@TBR1!1.05!10.33!TBR1;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.13!HSF4;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.77!TCF4;;chr7:64023410..64023428,-!p2@ZNF680!1.04!15.71!ZNF680;;chr19:13135566..13135577,+!p9@NFIX!1.04!9.92!NFIX;;chr12:24102576..24102623,-!p2@SOX5!1.04!9.92!SOX5;;chr9:126774058..126774081,+!p3@LHX2!1.04!9.92!LHX2;;chr2:113057415..113057477,+!p3@ZC3H6!1.03!12.61!ZC3H6;;chr11:31832807..31832823,-!p4@PAX6!1.03!9.71!PAX6;;chr21:39870339..39870443,-!p1@ERG!1.03!9.71!ERG;;chr14:73360799..73360817,-!p1@DPF3!1.02!33.28!DPF3;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.51!NKRF;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.51!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.02!9.51!ZNF366;;chr3:18466787..18466839,-!p1@SATB1!1.01!41.75!SATB1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.01!19.84!ZNF395;;chr5:138609489..138609542,+!p8@MATR3!1.01!9.30!MATR3;;chr9:14314946..14314983,-!p8@NFIB!1.01!9.30!NFIB;;chr5:139487608..139487663,+!p3@PURA!1.00!19.43!PURA;;chr20:51588873..51588953,+!p1@TSHZ2!1.00!11.99!TSHZ2;;chr11:125034586..125034604,+!p3@PKNOX2!1.00!9.09!PKNOX2;;chr16:67197952..67197990,+!p5@HSF4!1.00!9.09!HSF4;;chr3:24536332..24536358,-!p2@THRB!1.00!8.89!THRB;;chr2:214016314..214016343,-!p2@IKZF2!0.99!14.88!IKZF2;;chr2:162273254..162273267,+!p6@TBR1!0.99!8.68!TBR1;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.68!SOX7;;chr3:114819124..114819200,-!p3@ZBTB20!0.98!20.26!ZBTB20;;chr2:2335070..2335098,-!p4@MYT1L!0.98!8.47!MYT1L;;chr3:114343039..114343085,-!p8@ZBTB20!0.98!8.47!ZBTB20;;chr4:57547751..57547764,-!p6@HOPX!0.98!8.47!HOPX;;chr10:31610110..31610159,+!p2@ZEB1!0.98!8.47!ZEB1;;chr12:106976656..106976672,+!p4@RFX4!0.98!8.47!RFX4;;chr15:31631813..31631825,+!p17@KLF13!0.98!8.47!KLF13;;chr18:53070913..53070933,-!p16@TCF4!0.98!8.47!TCF4;;chr12:26277929..26277955,-!p3@BHLHE41!0.97!11.99!BHLHE41;;chr3:18466660..18466676,-!p5@SATB1!0.97!9.92!SATB1;;chr18:45935720..45935772,-!p1@ZBTB7C!0.97!8.27!ZBTB7C;;chr8:93074803..93074845,-!p1@RUNX1T1!0.97!8.27!RUNX1T1;;chr6:126112074..126112144,+!p1@NCOA7!0.96!112.44!NCOA7;;chr13:45151434..45151507,-!p3@TSC22D1!0.96!46.30!TSC22D1;;chr6:28321827..28321856,-!p5@ZNF323!0.96!8.06!ZNF323;;chr2:166428861..166428883,+!p3@CSRNP3!0.96!8.06!CSRNP3;;chr2:42721205..42721307,+!p4@MTA3!0.96!8.06!MTA3;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.06!EGR4;;chr7:64023441..64023462,-!p1@ZNF680!0.95!64.90!ZNF680;;chr5:172483347..172483407,+!p1@C5orf41!0.95!61.59!CREBRF;;chr16:79634624..79634642,-!p1@MAF!0.95!32.24!MAF;;chr20:3388541..3388575,-!p2@C20orf194!0.95!31.62!C20orf194;;chr19:4065848..4065909,-!p4@ZBTB7A!0.95!15.71!ZBTB7A;;chr10:64133862..64133884,+!p4@ZNF365!0.95!7.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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.38!238.31!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.24!171.76!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.16!159.36!RORB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.15!140.34!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.09!121.95!SOX10;;chr4:81118647..81118666,+!p1@PRDM8!1.97!119.46!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.94!97.56!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.91!SOX2;;chr9:114287433..114287513,+!p1@ZNF483!1.86!178.58!ZNF483;;chr10:64134120..64134183,+!p1@ZNF365!1.82!77.71!ZNF365;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.82!64.49!SMARCE1;;chr17:37764128..37764258,-!p1@NEUROD2!1.80!61.39!NEUROD2;;chr2:162272785..162272836,+!p1@TBR1!1.78!58.70!TBR1;;chr11:113930425..113930471,+!p1@ZBTB16!1.76!79.99!ZBTB16;;chr12:26277817..26277863,-!p2@BHLHE41!1.76!74.82!BHLHE41;;chr14:29235961..29236008,+!p1@FOXG1!1.76!56.22!FOXG1;;chr8:40755333..40755352,-!p1@ZMAT4!1.75!54.98!ZMAT4;;chr11:61520075..61520136,+!p1@C11orf9!1.73!107.27!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.43!POU3F3;;chr2:2334997..2335053,-!p1@MYT1L!1.70!48.57!MYT1L;;chr5:88178983..88179012,-!p1@MEF2C!1.69!351.16!MEF2C;;chr2:95963052..95963106,+!p1@KCNIP3!1.69!48.16!KCNIP3;;chr8:53322304..53322340,-!p1@ST18!1.69!47.74!ST18;;chr12:106976678..106976708,+!p2@RFX4!1.69!47.74!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.64!72.55!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!1.64!42.16!OLIG2;;chr15:80733570..80733659,+!p2@ARNT2!1.63!41.54!ARNT2;;chrX:25034067..25034088,-!p1@ARX!1.60!38.65!ARX;;chr19:46801639..46801699,+!p1@HIF3A!1.59!38.03!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.59!37.82!NFIX;;chr2:166326200..166326216,+!p1@CSRNP3!1.58!53.95!CSRNP3;;chr18:53070846..53070902,-!p6@TCF4!1.58!37.41!TCF4;;chr19:13135386..13135435,+!p4@NFIX!1.57!35.96!NFIX;;chr15:80735246..80735321,+!p3@ARNT2!1.54!33.48!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.52!32.45!TEF;;chr4:57547454..57547469,-!p1@HOPX!1.52!32.24!HOPX;;chr21:34442540..34442560,+!p2@OLIG1!1.52!32.24!OLIG1;;chr2:60781201..60781258,-!p3@BCL11A!1.51!31.00!BCL11A;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.38!SOX2;;chr14:29236269..29236285,+!p3@FOXG1!1.49!29.97!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!1.48!28.94!ZNF385A;;chr12:26277956..26277980,-!p1@BHLHE41!1.47!100.04!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!1.45!36.38!ARNT2;;chr10:119302232..119302265,+!p1@EMX2!1.43!26.04!EMX2;;chr8:145560111..145560165,-!p2@SCRT1!1.43!25.84!SCRT1;;chr8:53322347..53322378,-!p2@ST18!1.43!25.63!ST18;;chr7:31380292..31380351,-!p1@NEUROD6!1.42!25.22!NEUROD6;;chr8:145560371..145560449,-!p1@SCRT1!1.41!24.80!SCRT1;;chr11:8102846..8102892,+!p1@TUB!1.40!33.28!TUB;;chr16:1031762..1031781,+!p1@SOX8!1.40!23.98!SOX8;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.56!LHX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.39!23.36!PKNOX2;;chr11:31832862..31832884,-!p2@PAX6!1.39!23.36!PAX6;;chr10:48355030..48355090,+!p1@ZNF488!1.38!29.35!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.36!21.91!NKX6-2;;chr14:33403881..33403924,+!p1@NPAS3!1.35!21.50!NPAS3;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.20!SOX15;;chr15:31658288..31658338,+!p4@KLF13!1.34!20.88!KLF13;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.84!ASCL1;;chr14:29234581..29234601,+!p2@FOXG1!1.32!19.84!FOXG1;;chr12:54785074..54785122,-!p2@ZNF385A!1.31!29.56!ZNF385A;;chr6:126112039..126112062,+!p8@NCOA7!1.31!23.15!NCOA7;;chr9:77112225..77112238,+!p2@RORB!1.30!18.81!RORB;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.30!18.81!POU3F3;;chr1:61548069..61548102,+!p3@NFIA!1.29!44.23!NFIA;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.63!PROX1;;chr5:92920256..92920282,+!p7@NR2F1!1.28!21.70!NR2F1;;chr11:113930401..113930422,+!p3@ZBTB16!1.28!18.19!ZBTB16;;chr5:88179017..88179046,-!p2@MEF2C!1.27!69.45!MEF2C;;chr19:57352109..57352153,-!p2@ZIM2!1.27!17.78!ZIM2;;chr2:162272889..162272915,+!p2@TBR1!1.27!17.78!TBR1;;chr11:31832658..31832681,-!p1@PAX6!1.26!17.36!PAX6;;chr19:38085768..38085821,+!p1@ZNF540!1.25!24.80!ZNF540;;chr15:31631789..31631811,+!p13@KLF13!1.25!16.95!KLF13;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.95!HIF3A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.24!16.53!ZBED1;;chr2:2330039..2330072,-!p6@MYT1L!1.24!16.53!MYT1L;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.98!BCL11A;;chr6:15401104..15401166,+!p5@JARID2!1.23!15.91!JARID2;;chr11:47400078..47400106,-!p1@SPI1!1.23!15.91!SPI1;;chr17:38256822..38256851,-!p1@NR1D1!1.22!119.46!NR1D1;;chr14:33403648..33403710,+!p3@NPAS3!1.22!15.71!NPAS3;;chr3:126076242..126076257,-!p1@KLF15!1.21!19.02!KLF15;;chrX:118739835..118739862,-!p1@NKRF!1.21!16.74!NKRF;;chr2:162272716..162272753,+!p3@TBR1!1.21!15.29!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.21!15.09!RFX4;;chr17:70117153..70117174,+!p1@SOX9!1.20!151.91!SOX9;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.62!SATB2;;chr1:244219775..244219893,+!p2@ZNF238!1.20!20.05!ZNF238;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.67!DACH2;;chr9:3525910..3525955,-!p4@RFX3!1.19!42.78!RFX3;;chr3:141105705..141105770,+!p4@ZBTB38!1.18!17.36!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.18!16.12!HOPX;;chr7:63505799..63505904,+!p1@ZNF727!1.18!14.26!ZNF727;;chr2:2328299..2328363,-!p3@MYT1L!1.18!14.05!MYT1L;;chr16:67198633..67198671,+!p1@HSF4!1.17!13.85!HSF4;;chr9:126773880..126773895,+!p2@LHX2!1.17!13.85!LHX2;;chr9:3525867..3525902,-!p3@RFX3!1.16!46.30!RFX3;;chr16:85932760..85932775,+!p1@IRF8!1.16!13.43!IRF8;;chr2:166428839..166428859,+!p2@CSRNP3!1.16!13.43!CSRNP3;;chr2:95963120..95963136,+!p2@KCNIP3!1.16!13.43!KCNIP3;;chr14:58798013..58798071,+!p2@ARID4A!1.16!13.43!ARID4A;;chr6:143266185..143266238,-!p2@HIVEP2!1.15!17.98!HIVEP2;;chr7:73038839..73038862,-!p1@MLXIPL!1.15!13.23!MLXIPL;;chr11:125034605..125034636,+!p2@PKNOX2!1.15!13.02!PKNOX2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.30!ID4;;chr3:24536253..24536328,-!p1@THRB!1.14!24.39!THRB;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!20.88!ZBTB16;;chr19:38720294..38720348,-!p1@DPF1!1.14!16.12!DPF1;;chrX:70315688..70315709,+!p1@FOXO4!1.13!29.35!FOXO4;;chr6:28321971..28321995,-!p1@ZNF323!1.13!12.61!ZNF323;;chr17:38219209..38219230,+!p1@THRA!1.12!158.12!THRA;;chr1:8585945..8586056,-!p3@RERE!1.11!40.30!RERE;;chr3:141105235..141105307,+!p7@ZBTB38!1.11!11.99!ZBTB38;;chr14:24020938..24020988,-!p1@ZFHX2!1.10!16.53!ZFHX2;;chr8:30890810..30890880,-!p1@PURG!1.10!11.57!PURG;;chr1:151032860..151032918,+!p1@MLLT11!1.09!135.38!MLLT11;;chr12:24715376..24715432,-!p1@SOX5!1.09!14.26!SOX5;;chr14:33408072..33408114,+!p2@NPAS3!1.08!13.02!NPAS3;;chr20:42544782..42544828,+!p4@TOX2!1.08!11.16!TOX2;;chr3:21792682..21792720,-!p1@ZNF385D!1.08!11.16!ZNF385D;;chr5:178368186..178368238,+!p1@ZNF454!1.07!19.22!ZNF454;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.19!TCF4;;chr16:67198683..67198698,+!p2@HSF4!1.07!10.75!HSF4;;chr1:40105299..40105326,-!p1@HEYL!1.07!10.75!HEYL;;chr10:38265517..38265591,-!p1@ZNF25!1.06!41.13!ZNF25;;chr19:53636125..53636178,-!p1@ZNF415!1.06!29.97!ZNF415;;chr5:88179518..88179569,-!p5@MEF2C!1.06!13.85!MEF2C;;chr2:180726291..180726311,-!p1@ZNF385B!1.06!10.54!ZNF385B;;chr3:187463179..187463201,-!p2@BCL6!1.05!43.20!BCL6;;chr15:61521417..61521460,-!p2@RORA!1.05!23.15!RORA;;chr13:46549911..46549956,-!p3@ZC3H13!1.05!14.67!ZC3H13;;chr10:64134045..64134083,+!p3@ZNF365!1.05!10.33!ZNF365;;chr19:7580549..7580596,+!p3@ZNF358!1.05!10.33!ZNF358;;chr2:162273241..162273253,+!p4@TBR1!1.05!10.33!TBR1;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.13!HSF4;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.77!TCF4;;chr7:64023410..64023428,-!p2@ZNF680!1.04!15.71!ZNF680;;chr19:13135566..13135577,+!p9@NFIX!1.04!9.92!NFIX;;chr12:24102576..24102623,-!p2@SOX5!1.04!9.92!SOX5;;chr9:126774058..126774081,+!p3@LHX2!1.04!9.92!LHX2;;chr2:113057415..113057477,+!p3@ZC3H6!1.03!12.61!ZC3H6;;chr11:31832807..31832823,-!p4@PAX6!1.03!9.71!PAX6;;chr21:39870339..39870443,-!p1@ERG!1.03!9.71!ERG;;chr14:73360799..73360817,-!p1@DPF3!1.02!33.28!DPF3;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.51!NKRF;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.51!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.02!9.51!ZNF366;;chr3:18466787..18466839,-!p1@SATB1!1.01!41.75!SATB1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.01!19.84!ZNF395;;chr5:138609489..138609542,+!p8@MATR3!1.01!9.30!MATR3;;chr9:14314946..14314983,-!p8@NFIB!1.01!9.30!NFIB;;chr5:139487608..139487663,+!p3@PURA!1.00!19.43!PURA;;chr20:51588873..51588953,+!p1@TSHZ2!1.00!11.99!TSHZ2;;chr11:125034586..125034604,+!p3@PKNOX2!1.00!9.09!PKNOX2;;chr16:67197952..67197990,+!p5@HSF4!1.00!9.09!HSF4;;chr3:24536332..24536358,-!p2@THRB!1.00!8.89!THRB;;chr2:214016314..214016343,-!p2@IKZF2!0.99!14.88!IKZF2;;chr2:162273254..162273267,+!p6@TBR1!0.99!8.68!TBR1;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.68!SOX7;;chr3:114819124..114819200,-!p3@ZBTB20!0.98!20.26!ZBTB20;;chr2:2335070..2335098,-!p4@MYT1L!0.98!8.47!MYT1L;;chr3:114343039..114343085,-!p8@ZBTB20!0.98!8.47!ZBTB20;;chr4:57547751..57547764,-!p6@HOPX!0.98!8.47!HOPX;;chr10:31610110..31610159,+!p2@ZEB1!0.98!8.47!ZEB1;;chr12:106976656..106976672,+!p4@RFX4!0.98!8.47!RFX4;;chr15:31631813..31631825,+!p17@KLF13!0.98!8.47!KLF13;;chr18:53070913..53070933,-!p16@TCF4!0.98!8.47!TCF4;;chr12:26277929..26277955,-!p3@BHLHE41!0.97!11.99!BHLHE41;;chr3:18466660..18466676,-!p5@SATB1!0.97!9.92!SATB1;;chr18:45935720..45935772,-!p1@ZBTB7C!0.97!8.27!ZBTB7C;;chr8:93074803..93074845,-!p1@RUNX1T1!0.97!8.27!RUNX1T1;;chr6:126112074..126112144,+!p1@NCOA7!0.96!112.44!NCOA7;;chr13:45151434..45151507,-!p3@TSC22D1!0.96!46.30!TSC22D1;;chr6:28321827..28321856,-!p5@ZNF323!0.96!8.06!ZNF323;;chr2:166428861..166428883,+!p3@CSRNP3!0.96!8.06!CSRNP3;;chr2:42721205..42721307,+!p4@MTA3!0.96!8.06!MTA3;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.06!EGR4;;chr7:64023441..64023462,-!p1@ZNF680!0.95!64.90!ZNF680;;chr5:172483347..172483407,+!p1@C5orf41!0.95!61.59!CREBRF;;chr16:79634624..79634642,-!p1@MAF!0.95!32.24!MAF;;chr20:3388541..3388575,-!p2@C20orf194!0.95!31.62!C20orf194;;chr19:4065848..4065909,-!p4@ZBTB7A!0.95!15.71!ZBTB7A;;chr10:64133862..64133884,+!p4@ZNF365!0.95!7.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001872;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10157-103A4 | |id=FF:10157-103A4 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010034 | ||
|is_obsolete= | |||
|library_id=CNhs12317 | |||
|library_id_phase_based=2:CNhs12317 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10157 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10157 | |||
|name=parietal lobe, adult, donor10252 | |name=parietal lobe, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10028,,, | |profile_cagescan=NCig10028,,, | ||
|profile_hcage=CNhs12317,LSID913,release011,COMPLETED | |profile_hcage=CNhs12317,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0.0501011332195839,0,0,0,0.13083922350649,0.150256972842231,0,-0.010061057244155,0.308230077159195,0.146456038645897,0.883306102797529,0,0,0,0,0,0,0,0,0,0.150256972842231,0,0.0815945607332269,0,-0.0717284496152007,0,0,0,0.175135717256866,0,0.443651492411806,0,0,0.457396433406786,0,0,0,0,0,0,0.0407972803666135,0,0,0,0,0,-0.0299739501782837,0.532797371210192,0,0,0,0,0,0,0,0.17008488710599,0,0.131110882611342,0,0.976540653253096,0,0.196995502251229,0.308230077159195,0.595594531925607,0,0,0.252927807300635,0.209531203640986,0,0,0,0,0,0,0,0,0,0,0,0,0.150256972842231,0,0,0.150256972842231,0.0815945607332269,0.205967709927606,0,0.150256972842231,0,0,0.232431907480661,0.634173736769137,0.463189867177007,0,0.330869359383984,0.445560096955848,0.650457068820475,0.104765601820493,0,0.0751284864211155,0.0815945607332269,0.252236083276025,0.682118981946495,0,0,0,0,0,0,0.209531203640986,0,0,0,0,0.0815945607332269,0,0,0,0,0,0.249919852661645,0.209531203640986,0,0,0.0815945607332269,0.145099974238592,0,0,0.149167926573065,0.150256972842231,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=55.85025 | |rna_weight_ug=55.85025 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.21992222522422e-276!GO:0005737;cytoplasm;5.08850574203335e-143!GO:0043226;organelle;6.62645360068471e-102!GO:0043229;intracellular organelle;2.45935695598504e-101!GO:0043227;membrane-bound organelle;1.34851743053192e-94!GO:0043231;intracellular membrane-bound organelle;2.34138799033304e-94!GO:0044444;cytoplasmic part;1.64362078019306e-86!GO:0005515;protein binding;1.39044076941298e-70!GO:0044422;organelle part;7.27327913253785e-60!GO:0044446;intracellular organelle part;6.49583590311412e-59!GO:0032991;macromolecular complex;5.02205669317341e-58!GO:0016043;cellular component organization and biogenesis;5.32681114786341e-46!GO:0003723;RNA binding;7.37873076330159e-37!GO:0005739;mitochondrion;3.47300655417363e-36!GO:0033036;macromolecule localization;1.26374734741257e-35!GO:0030529;ribonucleoprotein complex;5.05890335128443e-35!GO:0015031;protein transport;4.23730265939009e-34!GO:0043234;protein complex;1.98991562187336e-33!GO:0008104;protein localization;3.62092193124956e-32!GO:0043233;organelle lumen;2.51012217107561e-31!GO:0031974;membrane-enclosed lumen;2.51012217107561e-31!GO:0044428;nuclear part;3.173419789854e-31!GO:0045184;establishment of protein localization;4.331432265319e-31!GO:0031090;organelle membrane;8.96310591779762e-31!GO:0046907;intracellular transport;1.43147516957155e-28!GO:0005634;nucleus;2.49165830247232e-28!GO:0051649;establishment of cellular localization;2.3943455952902e-27!GO:0051641;cellular localization;6.01383215524877e-27!GO:0044429;mitochondrial part;6.43314149606269e-27!GO:0016071;mRNA metabolic process;7.28884220966881e-27!GO:0043170;macromolecule metabolic process;1.3295948597377e-26!GO:0044238;primary metabolic process;2.27564654208195e-26!GO:0016192;vesicle-mediated transport;3.34076843536896e-26!GO:0006396;RNA processing;6.1316462420755e-25!GO:0044237;cellular metabolic process;6.44535556145392e-25!GO:0008380;RNA splicing;4.33131917057225e-24!GO:0031975;envelope;1.04642955202266e-23!GO:0031967;organelle envelope;1.43136660725722e-23!GO:0019538;protein metabolic process;2.14493194597037e-23!GO:0006397;mRNA processing;2.76678374198622e-22!GO:0005829;cytosol;8.20515403619816e-22!GO:0006996;organelle organization and biogenesis;1.19270824330541e-20!GO:0006886;intracellular protein transport;2.06995262314932e-20!GO:0044260;cellular macromolecule metabolic process;2.28723082213245e-20!GO:0006119;oxidative phosphorylation;5.74254417662404e-20!GO:0044267;cellular protein metabolic process;8.92953199637878e-20!GO:0031981;nuclear lumen;2.68834399917494e-19!GO:0005740;mitochondrial envelope;5.06457162335543e-19!GO:0043283;biopolymer metabolic process;1.03061031021428e-18!GO:0031966;mitochondrial membrane;1.05680783219899e-18!GO:0000166;nucleotide binding;2.08689392182726e-18!GO:0005794;Golgi apparatus;4.28048906362375e-18!GO:0031982;vesicle;4.68094889151781e-18!GO:0031410;cytoplasmic vesicle;3.63322487935739e-17!GO:0019866;organelle inner membrane;4.85607314377671e-17!GO:0005840;ribosome;1.44587313789379e-16!GO:0005743;mitochondrial inner membrane;2.07545127699871e-16!GO:0005681;spliceosome;3.06913451461469e-16!GO:0031988;membrane-bound vesicle;4.13177576549004e-16!GO:0065003;macromolecular complex assembly;9.16018060058138e-16!GO:0044455;mitochondrial membrane part;2.09207891573225e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.20853830168598e-15!GO:0016023;cytoplasmic membrane-bound vesicle;2.39178372783636e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;2.71542742830629e-15!GO:0016462;pyrophosphatase activity;2.77130278671154e-15!GO:0006512;ubiquitin cycle;4.7269749010297e-15!GO:0017111;nucleoside-triphosphatase activity;1.61436328540903e-14!GO:0043412;biopolymer modification;2.15906336542734e-14!GO:0043687;post-translational protein modification;3.64342776599357e-14!GO:0006412;translation;4.43835175820483e-14!GO:0032553;ribonucleotide binding;4.53797633404825e-14!GO:0032555;purine ribonucleotide binding;4.53797633404825e-14!GO:0005746;mitochondrial respiratory chain;4.90847922361548e-14!GO:0022607;cellular component assembly;5.37148969188198e-14!GO:0006464;protein modification process;1.57548233710013e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.01219664510312e-13!GO:0003954;NADH dehydrogenase activity;2.01219664510312e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.01219664510312e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.45365698896361e-13!GO:0045045;secretory pathway;4.2224094373124e-13!GO:0017076;purine nucleotide binding;4.71346973365209e-13!GO:0005654;nucleoplasm;7.54523419549896e-13!GO:0010467;gene expression;1.16685003218769e-12!GO:0030695;GTPase regulator activity;1.44280142846767e-12!GO:0003735;structural constituent of ribosome;1.97291794816986e-12!GO:0016874;ligase activity;3.18482874399734e-12!GO:0006457;protein folding;3.2389956056946e-12!GO:0007264;small GTPase mediated signal transduction;4.50395340193719e-12!GO:0044451;nucleoplasm part;8.52278845465295e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.72793554176471e-11!GO:0045271;respiratory chain complex I;1.72793554176471e-11!GO:0005747;mitochondrial respiratory chain complex I;1.72793554176471e-11!GO:0005083;small GTPase regulator activity;2.52999131947132e-11!GO:0006793;phosphorus metabolic process;3.15323274174576e-11!GO:0006796;phosphate metabolic process;3.15323274174576e-11!GO:0048770;pigment granule;3.29952592139358e-11!GO:0042470;melanosome;3.29952592139358e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.95764080286918e-11!GO:0042773;ATP synthesis coupled electron transport;3.95764080286918e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.15969697727955e-11!GO:0012505;endomembrane system;5.29913778216296e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.28218539937318e-11!GO:0048193;Golgi vesicle transport;7.28780251057162e-11!GO:0008134;transcription factor binding;7.38606724458064e-11!GO:0033279;ribosomal subunit;8.75585642815916e-11!GO:0043228;non-membrane-bound organelle;9.1821293037871e-11!GO:0043232;intracellular non-membrane-bound organelle;9.1821293037871e-11!GO:0008092;cytoskeletal protein binding;1.00107784078778e-10!GO:0030135;coated vesicle;1.61816303344062e-10!GO:0031980;mitochondrial lumen;2.6508339138696e-10!GO:0005759;mitochondrial matrix;2.6508339138696e-10!GO:0009058;biosynthetic process;4.32489953426935e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;6.92808824084364e-10!GO:0006511;ubiquitin-dependent protein catabolic process;7.30815172689367e-10!GO:0006810;transport;8.6069631084644e-10!GO:0019829;cation-transporting ATPase activity;1.02263354576574e-09!GO:0022618;protein-RNA complex assembly;1.03964272968851e-09!GO:0019941;modification-dependent protein catabolic process;1.09793178910505e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.09793178910505e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.14556160342644e-09!GO:0051082;unfolded protein binding;1.24273886117101e-09!GO:0009059;macromolecule biosynthetic process;1.48810478905816e-09!GO:0044257;cellular protein catabolic process;1.54611710929278e-09!GO:0003924;GTPase activity;2.28871849082129e-09!GO:0007010;cytoskeleton organization and biogenesis;3.14856994665889e-09!GO:0005768;endosome;3.14856994665889e-09!GO:0044265;cellular macromolecule catabolic process;3.4302737983971e-09!GO:0007399;nervous system development;4.29280832145197e-09!GO:0016604;nuclear body;4.5788629981977e-09!GO:0006605;protein targeting;7.20499462918415e-09!GO:0032940;secretion by cell;7.39713598115453e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.90804325932032e-09!GO:0044249;cellular biosynthetic process;8.44365033269007e-09!GO:0032559;adenyl ribonucleotide binding;9.48910714613198e-09!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.03707657319255e-08!GO:0043285;biopolymer catabolic process;1.08702903257458e-08!GO:0008565;protein transporter activity;1.09119215663841e-08!GO:0000502;proteasome complex (sensu Eukaryota);1.42258163139214e-08!GO:0044445;cytosolic part;1.53139700544224e-08!GO:0016607;nuclear speck;1.95332252030207e-08!GO:0016044;membrane organization and biogenesis;1.98970878208549e-08!GO:0008639;small protein conjugating enzyme activity;1.98993115913082e-08!GO:0008135;translation factor activity, nucleic acid binding;2.01440084664556e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.09126523225603e-08!GO:0043005;neuron projection;2.1075271261794e-08!GO:0016310;phosphorylation;2.42164919756387e-08!GO:0004842;ubiquitin-protein ligase activity;2.97904118759043e-08!GO:0005524;ATP binding;3.51064126387943e-08!GO:0044431;Golgi apparatus part;3.80224054558917e-08!GO:0051179;localization;4.39061961395373e-08!GO:0005525;GTP binding;4.42939775729379e-08!GO:0015986;ATP synthesis coupled proton transport;4.62911726991383e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.62911726991383e-08!GO:0019899;enzyme binding;5.37501717857661e-08!GO:0019787;small conjugating protein ligase activity;5.89079530942476e-08!GO:0030554;adenyl nucleotide binding;7.62552033428958e-08!GO:0051234;establishment of localization;8.23836024519646e-08!GO:0030163;protein catabolic process;9.91109664700357e-08!GO:0015630;microtubule cytoskeleton;1.22176374202052e-07!GO:0019717;synaptosome;1.24363505559601e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.50351732539051e-07!GO:0030136;clathrin-coated vesicle;2.30353038836908e-07!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.92126773834382e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.92126773834382e-07!GO:0000375;RNA splicing, via transesterification reactions;2.92126773834382e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.92126773834382e-07!GO:0006461;protein complex assembly;2.93636965720625e-07!GO:0008287;protein serine/threonine phosphatase complex;3.31234681206601e-07!GO:0009057;macromolecule catabolic process;4.11606301157519e-07!GO:0007242;intracellular signaling cascade;4.37329041644921e-07!GO:0015631;tubulin binding;5.42098271639286e-07!GO:0044248;cellular catabolic process;7.50904348023974e-07!GO:0006446;regulation of translational initiation;7.50904348023974e-07!GO:0046034;ATP metabolic process;8.33196430063179e-07!GO:0030029;actin filament-based process;8.44847693606483e-07!GO:0048523;negative regulation of cellular process;9.99114060659219e-07!GO:0032561;guanyl ribonucleotide binding;1.13779952406973e-06!GO:0019001;guanyl nucleotide binding;1.13779952406973e-06!GO:0015935;small ribosomal subunit;1.16649827560276e-06!GO:0016070;RNA metabolic process;1.37154173077698e-06!GO:0006913;nucleocytoplasmic transport;1.42517702450272e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.49320587353072e-06!GO:0006754;ATP biosynthetic process;1.62589378643668e-06!GO:0006753;nucleoside phosphate metabolic process;1.62589378643668e-06!GO:0016887;ATPase activity;1.67178932815311e-06!GO:0048471;perinuclear region of cytoplasm;1.87628627923128e-06!GO:0003712;transcription cofactor activity;1.87628627923128e-06!GO:0016881;acid-amino acid ligase activity;1.87628627923128e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.88704069758161e-06!GO:0051169;nuclear transport;2.14750649011597e-06!GO:0031252;leading edge;2.29818093298905e-06!GO:0042623;ATPase activity, coupled;2.37491501535386e-06!GO:0007265;Ras protein signal transduction;2.41237493468706e-06!GO:0051186;cofactor metabolic process;2.88110838022595e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.16493213904847e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.16493213904847e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.20178151347619e-06!GO:0000139;Golgi membrane;3.34445710585517e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.63179171076749e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.65459501111229e-06!GO:0006413;translational initiation;3.65459501111229e-06!GO:0044440;endosomal part;3.90500473712115e-06!GO:0010008;endosome membrane;3.90500473712115e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.97276109423643e-06!GO:0005730;nucleolus;3.98023428802561e-06!GO:0009060;aerobic respiration;4.01517474238798e-06!GO:0003743;translation initiation factor activity;4.16189556495153e-06!GO:0008047;enzyme activator activity;4.19016701707226e-06!GO:0048475;coated membrane;4.52990469377621e-06!GO:0030117;membrane coat;4.52990469377621e-06!GO:0009141;nucleoside triphosphate metabolic process;4.66795988671358e-06!GO:0031965;nuclear membrane;4.97124827193277e-06!GO:0003779;actin binding;5.13254321721322e-06!GO:0005096;GTPase activator activity;5.13254321721322e-06!GO:0005874;microtubule;6.3200659701269e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.59699309825661e-06!GO:0009150;purine ribonucleotide metabolic process;6.84077954626458e-06!GO:0006163;purine nucleotide metabolic process;7.02114718685079e-06!GO:0051056;regulation of small GTPase mediated signal transduction;7.21426344955644e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.96246009655517e-06!GO:0005783;endoplasmic reticulum;8.12311093365934e-06!GO:0045333;cellular respiration;8.43134589495904e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.65405517597746e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.65405517597746e-06!GO:0009152;purine ribonucleotide biosynthetic process;9.71315611794995e-06!GO:0006164;purine nucleotide biosynthetic process;1.05333330927526e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.13080891846533e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.13080891846533e-05!GO:0009259;ribonucleotide metabolic process;1.24552877913946e-05!GO:0032446;protein modification by small protein conjugation;1.29577437834457e-05!GO:0005635;nuclear envelope;1.31373037007566e-05!GO:0006897;endocytosis;1.82710018787023e-05!GO:0010324;membrane invagination;1.82710018787023e-05!GO:0048519;negative regulation of biological process;1.89733705780128e-05!GO:0016568;chromatin modification;2.22392637825878e-05!GO:0005905;coated pit;2.32142066417955e-05!GO:0045259;proton-transporting ATP synthase complex;2.33194279585304e-05!GO:0006323;DNA packaging;2.39014203171156e-05!GO:0016564;transcription repressor activity;2.66885279026522e-05!GO:0005761;mitochondrial ribosome;2.67788593704374e-05!GO:0000313;organellar ribosome;2.67788593704374e-05!GO:0016567;protein ubiquitination;2.72253870597509e-05!GO:0005769;early endosome;2.94084968986233e-05!GO:0005770;late endosome;3.30432256877275e-05!GO:0051128;regulation of cellular component organization and biogenesis;3.32981126851807e-05!GO:0009260;ribonucleotide biosynthetic process;3.80464142738626e-05!GO:0009055;electron carrier activity;4.16054605940243e-05!GO:0045786;negative regulation of progression through cell cycle;4.76080585115382e-05!GO:0008017;microtubule binding;4.936846428138e-05!GO:0006099;tricarboxylic acid cycle;4.99967303792384e-05!GO:0046356;acetyl-CoA catabolic process;4.99967303792384e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.06621240227643e-05!GO:0015399;primary active transmembrane transporter activity;5.06621240227643e-05!GO:0005085;guanyl-nucleotide exchange factor activity;5.9425603759395e-05!GO:0015934;large ribosomal subunit;6.22613800614291e-05!GO:0030027;lamellipodium;7.76897919319002e-05!GO:0017038;protein import;7.83869205922166e-05!GO:0006259;DNA metabolic process;8.23763277760801e-05!GO:0030425;dendrite;8.29657502611053e-05!GO:0008021;synaptic vesicle;9.26389036501047e-05!GO:0000245;spliceosome assembly;9.43595306578077e-05!GO:0022890;inorganic cation transmembrane transporter activity;9.80321014208418e-05!GO:0016301;kinase activity;0.000100151790007018!GO:0009109;coenzyme catabolic process;0.00010274952966612!GO:0050789;regulation of biological process;0.00010717762533756!GO:0030120;vesicle coat;0.000108097784716943!GO:0030662;coated vesicle membrane;0.000108097784716943!GO:0043492;ATPase activity, coupled to movement of substances;0.000108327090939458!GO:0003714;transcription corepressor activity;0.000143016674515356!GO:0005798;Golgi-associated vesicle;0.000143570129160264!GO:0006732;coenzyme metabolic process;0.000149216916826851!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000155717659268888!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000155770314737926!GO:0050794;regulation of cellular process;0.000178107954521456!GO:0000151;ubiquitin ligase complex;0.000180931882530125!GO:0000159;protein phosphatase type 2A complex;0.000192206231023822!GO:0051187;cofactor catabolic process;0.000193121330177126!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000204803941040697!GO:0006084;acetyl-CoA metabolic process;0.00022964714758667!GO:0043566;structure-specific DNA binding;0.00028145744222436!GO:0046578;regulation of Ras protein signal transduction;0.00029170430348546!GO:0000902;cell morphogenesis;0.00029170430348546!GO:0032989;cellular structure morphogenesis;0.00029170430348546!GO:0048489;synaptic vesicle transport;0.000291989963023264!GO:0006403;RNA localization;0.000311172945265022!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000366206490137315!GO:0003676;nucleic acid binding;0.000375466800594627!GO:0009966;regulation of signal transduction;0.000402669105156529!GO:0050657;nucleic acid transport;0.000404074060940999!GO:0051236;establishment of RNA localization;0.000404074060940999!GO:0050658;RNA transport;0.000404074060940999!GO:0004721;phosphoprotein phosphatase activity;0.000404074060940999!GO:0008219;cell death;0.000421948253798926!GO:0016265;death;0.000421948253798926!GO:0044453;nuclear membrane part;0.000441771136287455!GO:0005643;nuclear pore;0.000441771136287455!GO:0004674;protein serine/threonine kinase activity;0.000454912541211948!GO:0051246;regulation of protein metabolic process;0.000486783983085519!GO:0016311;dephosphorylation;0.000555813708646095!GO:0008601;protein phosphatase type 2A regulator activity;0.000622541838152174!GO:0006613;cotranslational protein targeting to membrane;0.000640511111879291!GO:0003729;mRNA binding;0.000648608036198276!GO:0051087;chaperone binding;0.00066412887790009!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000682383786359347!GO:0008026;ATP-dependent helicase activity;0.000703007631396353!GO:0019902;phosphatase binding;0.000730930384697917!GO:0005793;ER-Golgi intermediate compartment;0.000747750224296579!GO:0019208;phosphatase regulator activity;0.000759709258219739!GO:0012501;programmed cell death;0.000782629426665507!GO:0030133;transport vesicle;0.000786097628717614!GO:0045055;regulated secretory pathway;0.000787683351291252!GO:0003724;RNA helicase activity;0.000795600865356676!GO:0006607;NLS-bearing substrate import into nucleus;0.000810236919372033!GO:0006888;ER to Golgi vesicle-mediated transport;0.000810976276677014!GO:0031072;heat shock protein binding;0.000842193763156014!GO:0006915;apoptosis;0.000844163642866837!GO:0005741;mitochondrial outer membrane;0.000901130389910241!GO:0006366;transcription from RNA polymerase II promoter;0.000907704919285056!GO:0016791;phosphoric monoester hydrolase activity;0.0009134534897021!GO:0030118;clathrin coat;0.000944779273798665!GO:0009056;catabolic process;0.001116834326224!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.0011270331687391!GO:0007269;neurotransmitter secretion;0.00115379022171496!GO:0016197;endosome transport;0.00115405900237592!GO:0006606;protein import into nucleus;0.00125365074481361!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00125487087618727!GO:0004812;aminoacyl-tRNA ligase activity;0.00125487087618727!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00125487087618727!GO:0004386;helicase activity;0.0012711593924116!GO:0051276;chromosome organization and biogenesis;0.00128582475809331!GO:0030867;rough endoplasmic reticulum membrane;0.00131866993323641!GO:0007266;Rho protein signal transduction;0.00138882147205904!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00139653261951539!GO:0005773;vacuole;0.0014782802806409!GO:0006470;protein amino acid dephosphorylation;0.0014983404044452!GO:0043623;cellular protein complex assembly;0.00149863336637922!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00155274947856281!GO:0007019;microtubule depolymerization;0.00156816351631377!GO:0004722;protein serine/threonine phosphatase activity;0.00158427026211689!GO:0005938;cell cortex;0.00161236930387274!GO:0005875;microtubule associated complex;0.00161399958485178!GO:0016050;vesicle organization and biogenesis;0.00164106728521938!GO:0030532;small nuclear ribonucleoprotein complex;0.00169546903946906!GO:0051170;nuclear import;0.00173075760349626!GO:0051188;cofactor biosynthetic process;0.00178402517567899!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00189801567211749!GO:0019226;transmission of nerve impulse;0.00189835433607701!GO:0005791;rough endoplasmic reticulum;0.00216216925210482!GO:0051726;regulation of cell cycle;0.00216769590736528!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0021952514669589!GO:0019904;protein domain specific binding;0.00226036357514226!GO:0050767;regulation of neurogenesis;0.00229591089539576!GO:0048468;cell development;0.00234717884913302!GO:0006752;group transfer coenzyme metabolic process;0.0023763760665186!GO:0005813;centrosome;0.00243108427487887!GO:0031901;early endosome membrane;0.00243108427487887!GO:0030426;growth cone;0.00243108427487887!GO:0009892;negative regulation of metabolic process;0.00243108427487887!GO:0043038;amino acid activation;0.00243108427487887!GO:0006418;tRNA aminoacylation for protein translation;0.00243108427487887!GO:0043039;tRNA aminoacylation;0.00243108427487887!GO:0044432;endoplasmic reticulum part;0.00245656144282031!GO:0030427;site of polarized growth;0.00245969239132073!GO:0019888;protein phosphatase regulator activity;0.00245969239132073!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00245991006702726!GO:0022406;membrane docking;0.00252511566802814!GO:0048278;vesicle docking;0.00252511566802814!GO:0003697;single-stranded DNA binding;0.00253090655239036!GO:0006402;mRNA catabolic process;0.00257978275542096!GO:0016740;transferase activity;0.00261486773355687!GO:0031968;organelle outer membrane;0.00267967541148771!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00272113220794484!GO:0019867;outer membrane;0.00276098408757688!GO:0006904;vesicle docking during exocytosis;0.00284802760792809!GO:0005099;Ras GTPase activator activity;0.00288248582303463!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00288248582303463!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00288248582303463!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00288248582303463!GO:0007049;cell cycle;0.00288248582303463!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00323711647133067!GO:0000074;regulation of progression through cell cycle;0.00329193475954424!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00331161660501899!GO:0033673;negative regulation of kinase activity;0.00339742053079196!GO:0006469;negative regulation of protein kinase activity;0.00339742053079196!GO:0006650;glycerophospholipid metabolic process;0.00339753573386095!GO:0051028;mRNA transport;0.00359245356354818!GO:0008154;actin polymerization and/or depolymerization;0.0037844244384409!GO:0003713;transcription coactivator activity;0.00406653495209357!GO:0006892;post-Golgi vesicle-mediated transport;0.00425420355860669!GO:0008654;phospholipid biosynthetic process;0.004392200668945!GO:0008139;nuclear localization sequence binding;0.004392200668945!GO:0019887;protein kinase regulator activity;0.0044891695668298!GO:0015980;energy derivation by oxidation of organic compounds;0.00456489253679844!GO:0030054;cell junction;0.00457961616965663!GO:0031114;regulation of microtubule depolymerization;0.00475909962476057!GO:0007026;negative regulation of microtubule depolymerization;0.00475909962476057!GO:0005516;calmodulin binding;0.00498162842373137!GO:0009108;coenzyme biosynthetic process;0.00499057569394688!GO:0032011;ARF protein signal transduction;0.00499200563557788!GO:0032012;regulation of ARF protein signal transduction;0.00499200563557788!GO:0006333;chromatin assembly or disassembly;0.00509835064658295!GO:0030424;axon;0.0051701877478608!GO:0016481;negative regulation of transcription;0.00520365197961419!GO:0008286;insulin receptor signaling pathway;0.0052077287394451!GO:0048487;beta-tubulin binding;0.00523316030071275!GO:0048167;regulation of synaptic plasticity;0.00539346596580499!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00544906739504438!GO:0043069;negative regulation of programmed cell death;0.00552418280755264!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00557627474044093!GO:0055083;monovalent inorganic anion homeostasis;0.00557627474044093!GO:0055064;chloride ion homeostasis;0.00557627474044093!GO:0030644;cellular chloride ion homeostasis;0.00557627474044093!GO:0006891;intra-Golgi vesicle-mediated transport;0.00560626182890965!GO:0007017;microtubule-based process;0.00560626182890965!GO:0005815;microtubule organizing center;0.00571875751637636!GO:0005100;Rho GTPase activator activity;0.00575084749349642!GO:0050839;cell adhesion molecule binding;0.00586843761787879!GO:0012506;vesicle membrane;0.00595191848888639!GO:0043066;negative regulation of apoptosis;0.00602306807680781!GO:0006916;anti-apoptosis;0.00608813573890436!GO:0016363;nuclear matrix;0.00619954469808424!GO:0051348;negative regulation of transferase activity;0.00621677848111879!GO:0051261;protein depolymerization;0.00628322462323662!GO:0005869;dynactin complex;0.0063059663210477!GO:0043087;regulation of GTPase activity;0.0065182513057446!GO:0046488;phosphatidylinositol metabolic process;0.00699829156711554!GO:0043209;myelin sheath;0.00713200398631844!GO:0006612;protein targeting to membrane;0.00716562718437979!GO:0046467;membrane lipid biosynthetic process;0.00718766067980892!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00726951516949827!GO:0044448;cell cortex part;0.00745099883893351!GO:0005839;proteasome core complex (sensu Eukaryota);0.00761982960949698!GO:0006887;exocytosis;0.00827898355082225!GO:0051168;nuclear export;0.0082801076385194!GO:0001726;ruffle;0.0082801076385194!GO:0051427;hormone receptor binding;0.00839273039443004!GO:0008186;RNA-dependent ATPase activity;0.00841991429231056!GO:0019903;protein phosphatase binding;0.0084835128685426!GO:0048699;generation of neurons;0.00878617267735859!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00883930372523163!GO:0019198;transmembrane receptor protein phosphatase activity;0.00883930372523163!GO:0001505;regulation of neurotransmitter levels;0.00900740991404239!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00928177720172429!GO:0030258;lipid modification;0.00931754318507179!GO:0005048;signal sequence binding;0.00931754318507179!GO:0050811;GABA receptor binding;0.00932139089451169!GO:0000323;lytic vacuole;0.00932139089451169!GO:0005764;lysosome;0.00932139089451169!GO:0003690;double-stranded DNA binding;0.0097748890272488!GO:0042802;identical protein binding;0.0102097987965032!GO:0019207;kinase regulator activity;0.0102097987965032!GO:0042578;phosphoric ester hydrolase activity;0.010244641918443!GO:0031902;late endosome membrane;0.0106915310860686!GO:0043021;ribonucleoprotein binding;0.0108226705606349!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0109127013026648!GO:0051920;peroxiredoxin activity;0.0111095624749217!GO:0050803;regulation of synapse structure and activity;0.0112104871470926!GO:0031124;mRNA 3'-end processing;0.0118494464486904!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0119237556850448!GO:0022008;neurogenesis;0.0119798189807692!GO:0031324;negative regulation of cellular metabolic process;0.0120099785429092!GO:0030384;phosphoinositide metabolic process;0.0125575186982507!GO:0005789;endoplasmic reticulum membrane;0.0128237397174924!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0132452865829249!GO:0048500;signal recognition particle;0.0133365269806293!GO:0030658;transport vesicle membrane;0.0134327615725455!GO:0030742;GTP-dependent protein binding;0.013644878263122!GO:0051252;regulation of RNA metabolic process;0.0136660427693871!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0137704291084816!GO:0045892;negative regulation of transcription, DNA-dependent;0.0140656344870678!GO:0043086;negative regulation of catalytic activity;0.0141471371143159!GO:0035257;nuclear hormone receptor binding;0.0141926222338389!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0142773978976775!GO:0004667;prostaglandin-D synthase activity;0.0142773978976775!GO:0050802;circadian sleep/wake cycle, sleep;0.0142773978976775!GO:0022410;circadian sleep/wake cycle process;0.0142773978976775!GO:0042749;regulation of circadian sleep/wake cycle;0.0142773978976775!GO:0030660;Golgi-associated vesicle membrane;0.0142936617330058!GO:0004672;protein kinase activity;0.0144131985948314!GO:0044433;cytoplasmic vesicle part;0.0152616861582384!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0154632377246829!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0154946436130376!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0160713251100684!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0160713251100684!GO:0035035;histone acetyltransferase binding;0.0165845161553149!GO:0046930;pore complex;0.0166804430658919!GO:0042254;ribosome biogenesis and assembly;0.0167311042690089!GO:0051540;metal cluster binding;0.0171395084251874!GO:0051536;iron-sulfur cluster binding;0.0171395084251874!GO:0008361;regulation of cell size;0.0177001690749347!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0177562576048569!GO:0045296;cadherin binding;0.0177770071946786!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0178923463862267!GO:0051020;GTPase binding;0.0181847048699542!GO:0065007;biological regulation;0.0182677165794987!GO:0030182;neuron differentiation;0.0183165617814249!GO:0007243;protein kinase cascade;0.0187386165731679!GO:0003725;double-stranded RNA binding;0.0187399916629231!GO:0000287;magnesium ion binding;0.0187399916629231!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0187399916629231!GO:0033043;regulation of organelle organization and biogenesis;0.0187399916629231!GO:0065009;regulation of a molecular function;0.0193467688705445!GO:0015629;actin cytoskeleton;0.0194122721237428!GO:0007050;cell cycle arrest;0.0195196642522813!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0197522663967907!GO:0004004;ATP-dependent RNA helicase activity;0.0202900262071867!GO:0008022;protein C-terminus binding;0.0202968409091748!GO:0001666;response to hypoxia;0.0207227552710919!GO:0005774;vacuolar membrane;0.0207492939724249!GO:0030041;actin filament polymerization;0.0217564339723846!GO:0065002;intracellular protein transport across a membrane;0.0220695375165526!GO:0007268;synaptic transmission;0.0221165161377927!GO:0006376;mRNA splice site selection;0.022323660459714!GO:0000389;nuclear mRNA 3'-splice site recognition;0.022323660459714!GO:0006401;RNA catabolic process;0.0223719482868316!GO:0009117;nucleotide metabolic process;0.0225099210990134!GO:0006643;membrane lipid metabolic process;0.0228107477969762!GO:0030132;clathrin coat of coated pit;0.02295007374408!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0229661640921939!GO:0006414;translational elongation;0.0239542745358211!GO:0000059;protein import into nucleus, docking;0.0253036989687293!GO:0005868;cytoplasmic dynein complex;0.0253630530923562!GO:0007272;ensheathment of neurons;0.0253630530923562!GO:0008366;axon ensheathment;0.0253630530923562!GO:0019783;small conjugating protein-specific protease activity;0.0254689583714333!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0255992615773084!GO:0000314;organellar small ribosomal subunit;0.0255992615773084!GO:0005763;mitochondrial small ribosomal subunit;0.0255992615773084!GO:0004298;threonine endopeptidase activity;0.0259553116572364!GO:0030137;COPI-coated vesicle;0.0259553116572364!GO:0042026;protein refolding;0.0279524724401714!GO:0000209;protein polyubiquitination;0.0279524724401714!GO:0043488;regulation of mRNA stability;0.0279524724401714!GO:0043487;regulation of RNA stability;0.0279524724401714!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0280794278940914!GO:0005885;Arp2/3 protein complex;0.0286480153396618!GO:0035258;steroid hormone receptor binding;0.0288365590417973!GO:0004843;ubiquitin-specific protease activity;0.0295629388403395!GO:0000062;acyl-CoA binding;0.0301271404636608!GO:0007034;vacuolar transport;0.0306913025535898!GO:0016049;cell growth;0.0317813616758606!GO:0001508;regulation of action potential;0.0323420036790285!GO:0043407;negative regulation of MAP kinase activity;0.0324670091130224!GO:0005952;cAMP-dependent protein kinase complex;0.0326006583568961!GO:0044456;synapse part;0.0326006583568961!GO:0030030;cell projection organization and biogenesis;0.033346925101846!GO:0048858;cell projection morphogenesis;0.033346925101846!GO:0032990;cell part morphogenesis;0.033346925101846!GO:0006378;mRNA polyadenylation;0.0338231869300247!GO:0017166;vinculin binding;0.034018272308648!GO:0031371;ubiquitin conjugating enzyme complex;0.0341876284423769!GO:0003746;translation elongation factor activity;0.0346126457244065!GO:0005545;phosphatidylinositol binding;0.0348789890951221!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0348789890951221!GO:0035023;regulation of Rho protein signal transduction;0.0353519758712094!GO:0006468;protein amino acid phosphorylation;0.0353519758712094!GO:0008090;retrograde axon cargo transport;0.0355622424575862!GO:0033596;TSC1-TSC2 complex;0.0355622424575862!GO:0033693;neurofilament bundle assembly;0.0355622424575862!GO:0006818;hydrogen transport;0.0361622180806201!GO:0030125;clathrin vesicle coat;0.0362445120808649!GO:0030665;clathrin coated vesicle membrane;0.0362445120808649!GO:0005092;GDP-dissociation inhibitor activity;0.0370102263388342!GO:0031267;small GTPase binding;0.0370102263388342!GO:0030659;cytoplasmic vesicle membrane;0.0372616374860372!GO:0030911;TPR domain binding;0.0375426955657984!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0377326178449042!GO:0045047;protein targeting to ER;0.0377326178449042!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0377326178449042!GO:0015002;heme-copper terminal oxidase activity;0.0377326178449042!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0377326178449042!GO:0004129;cytochrome-c oxidase activity;0.0377326178449042!GO:0043681;protein import into mitochondrion;0.0384539266123059!GO:0030119;AP-type membrane coat adaptor complex;0.0397373204858737!GO:0008088;axon cargo transport;0.0398202033230923!GO:0051789;response to protein stimulus;0.0398477864209686!GO:0006986;response to unfolded protein;0.0398477864209686!GO:0016859;cis-trans isomerase activity;0.0398477864209686!GO:0006974;response to DNA damage stimulus;0.039922622010928!GO:0042995;cell projection;0.0402509783698456!GO:0019911;structural constituent of myelin sheath;0.0404289817088932!GO:0001578;microtubule bundle formation;0.0404578167655581!GO:0031123;RNA 3'-end processing;0.0405822776946421!GO:0017016;Ras GTPase binding;0.0406705936222004!GO:0015992;proton transport;0.0423802257431938!GO:0046839;phospholipid dephosphorylation;0.0425546935656664!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0426249580567846!GO:0009165;nucleotide biosynthetic process;0.0426249580567846!GO:0031109;microtubule polymerization or depolymerization;0.0426249580567846!GO:0003711;transcription elongation regulator activity;0.0426354369747168!GO:0005765;lysosomal membrane;0.0426904124527388!GO:0051539;4 iron, 4 sulfur cluster binding;0.0436297250096779!GO:0019894;kinesin binding;0.0436572522638276!GO:0016579;protein deubiquitination;0.0437751432223753!GO:0004221;ubiquitin thiolesterase activity;0.0438250288469864!GO:0008312;7S RNA binding;0.0463048959285533!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.048063092447941 | |||
|sample_id=10157 | |sample_id=10157 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=parietal lobe | |sample_tissue=parietal lobe | ||
|top_motifs=DBP:4.08558100876;MYFfamily:3.93887082816;AHR_ARNT_ARNT2:3.9363225697;HOXA9_MEIS1:3.92122164427;REST:3.9098321918;NHLH1,2:3.84124506297;CUX2:3.71881782176;PRRX1,2:3.61283047121;RREB1:3.56769477543;ATF2:3.33032804636;ZFP161:3.24419868154;PRDM1:3.24177142017;MED-1{core}:3.17471384943;EGR1..3:3.12526628875;ZBTB6:2.97881613548;FOXQ1:2.93640880349;GATA4:2.83831222452;MTE{core}:2.82474485391;GTF2I:2.81280271231;OCT4_SOX2{dimer}:2.7431742371;MTF1:2.73549944166;PAX4:2.63531629799;FOXD3:2.63008510372;MZF1:2.61889232207;SOX2:2.59724113624;NKX3-2:2.56068839252;TFAP2B:2.53624813715;POU5F1:2.49233029008;FOXM1:2.48050005307;CDC5L:2.41829369066;PAX6:2.39539916377;RFX2..5_RFXANK_RFXAP:2.29898329699;RFX1:2.27254341231;POU6F1:2.26259294243;BPTF:2.22188722159;GFI1B:2.219546202;ZNF384:2.20793574025;PATZ1:2.19119438812;PAX5:2.1631006616;NFIL3:2.14739402179;ARID5B:2.12366360219;IKZF2:2.11395465688;TGIF1:2.10508273058;HIC1:2.07019174606;HMGA1,2:2.04788978528;FOXP1:2.01266409919;KLF4:1.98205459504;BREu{core}:1.87325792242;SOX{8,9,10}:1.87311989281;POU3F1..4:1.83958840302;NFIX:1.81903500705;HBP1_HMGB_SSRP1_UBTF:1.77631586915;LMO2:1.76541140823;FOX{F1,F2,J1}:1.71034585152;MAZ:1.68796488154;SMAD1..7,9:1.61561501723;NRF1:1.60685250339;SOX5:1.60520244438;HOX{A4,D4}:1.5470351033;TEF:1.53626509706;NKX6-1,2:1.47701454406;TFDP1:1.46567621881;FOXP3:1.43421362013;T:1.3805196264;ALX1:1.37620685158;EP300:1.30696383302;GCM1,2:1.2673126486;NANOG:1.25267852875;JUN:1.23316524377;STAT1,3:1.22387701195;SOX17:1.21867327739;POU1F1:1.1939317036;EBF1:1.17587680974;MAFB:1.16083475802;LEF1_TCF7_TCF7L1,2:1.15999627424;HAND1,2:1.11637427701;XBP1:1.07748107114;RBPJ:1.07286683553;ONECUT1,2:1.04040246865;ZNF143:0.9969450018;FOX{D1,D2}:0.966254909322;ADNP_IRX_SIX_ZHX:0.933310576647;FOXL1:0.920822941988;ZNF238:0.874133955281;SP1:0.857435036446;STAT2,4,6:0.856522241158;AR:0.842789077818;ZBTB16:0.838996156786;NR3C1:0.826997260669;SPZ1:0.820496149995;MYOD1:0.811348244491;TOPORS:0.801665905676;GTF2A1,2:0.691291983865;SREBF1,2:0.67997274571;NKX2-3_NKX2-5:0.678458672762;TLX1..3_NFIC{dimer}:0.673017673744;ESRRA:0.645917330808;FOXN1:0.61463033244;ZEB1:0.598397827282;TFAP2{A,C}:0.597654708914;PBX1:0.582292716655;CRX:0.56981524989;CREB1:0.51584031216;TLX2:0.515822291558;HMX1:0.50617846536;MYBL2:0.50429919472;GZF1:0.497515915358;MEF2{A,B,C,D}:0.425338666209;ATF5_CREB3:0.390331973204;AIRE:0.378965494609;UFEwm:0.360712763003;RORA:0.326053575888;GFI1:0.301302663405;FOXO1,3,4:0.233586606241;ZNF423:0.204916161862;ZIC1..3:0.175511488692;IRF7:0.141645365403;FOXA2:0.0757174511461;YY1:0.0424862438569;FOX{I1,J2}:0.0235179501448;DMAP1_NCOR{1,2}_SMARC:0.00895351454877;PAX2:-0.00835285830532;NKX3-1:-0.0168973886548;CDX1,2,4:-0.0239320062183;ATF4:-0.04700131223;HSF1,2:-0.0473015053195;NFATC1..3:-0.0712152895731;NFY{A,B,C}:-0.0815008777447;PAX3,7:-0.0981228312954;TBX4,5:-0.19387004622;IKZF1:-0.197684728477;IRF1,2:-0.205544777676;NFE2L2:-0.239417424265;HOX{A6,A7,B6,B7}:-0.269761545089;NKX2-2,8:-0.309458013609;LHX3,4:-0.31899385631;EVI1:-0.352893179741;HIF1A:-0.374862751911;PDX1:-0.378743766596;PAX1,9:-0.379721464853;SPI1:-0.438565636227;XCPE1{core}:-0.454201427984;NANOG{mouse}:-0.489654470546;SNAI1..3:-0.499451868344;VSX1,2:-0.508431841771;CEBPA,B_DDIT3:-0.510306315635;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.541381394471;NFE2:-0.573633404557;bHLH_family:-0.593401393606;NFE2L1:-0.593962262551;SPIB:-0.773790438322;ATF6:-0.828131635139;PITX1..3:-0.841707855247;GATA6:-0.857117611784;ETS1,2:-0.892440251973;HNF1A:-1.08298719315;FOSL2:-1.09780370055;BACH2:-1.09796329324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10061134445;TP53:-1.11527422237;PAX8:-1.1203964022;TAL1_TCF{3,4,12}:-1.15113326937;NR1H4:-1.16043439201;HNF4A_NR2F1,2:-1.16901134883;E2F1..5:-1.16962458757;TEAD1:-1.17147478625;FOS_FOS{B,L1}_JUN{B,D}:-1.17437381625;NR5A1,2:-1.27283139839;TFCP2:-1.29641899602;NFKB1_REL_RELA:-1.2990395968;POU2F1..3:-1.31651341592;RUNX1..3:-1.34097578894;TFAP4:-1.34986647471;GLI1..3:-1.4068071297;RXRA_VDR{dimer}:-1.48754516291;ALX4:-1.48816839285;ELK1,4_GABP{A,B1}:-1.51402212844;NKX2-1,4:-1.51711454897;ZNF148:-1.52000673373;HLF:-1.55388989862;ELF1,2,4:-1.55756250677;RXR{A,B,G}:-1.58633605086;PPARG:-1.62084288297;TBP:-1.68060687906;MYB:-1.75860180603;ESR1:-1.77772562245;SRF:-2.00214295858;STAT5{A,B}:-2.06802130965;HOX{A5,B5}:-2.30642319125;NR6A1:-2.36367092512;EN1,2:-2.53523135548;HES1:-2.75754948935 | |top_motifs=DBP:4.08558100876;MYFfamily:3.93887082816;AHR_ARNT_ARNT2:3.9363225697;HOXA9_MEIS1:3.92122164427;REST:3.9098321918;NHLH1,2:3.84124506297;CUX2:3.71881782176;PRRX1,2:3.61283047121;RREB1:3.56769477543;ATF2:3.33032804636;ZFP161:3.24419868154;PRDM1:3.24177142017;MED-1{core}:3.17471384943;EGR1..3:3.12526628875;ZBTB6:2.97881613548;FOXQ1:2.93640880349;GATA4:2.83831222452;MTE{core}:2.82474485391;GTF2I:2.81280271231;OCT4_SOX2{dimer}:2.7431742371;MTF1:2.73549944166;PAX4:2.63531629799;FOXD3:2.63008510372;MZF1:2.61889232207;SOX2:2.59724113624;NKX3-2:2.56068839252;TFAP2B:2.53624813715;POU5F1:2.49233029008;FOXM1:2.48050005307;CDC5L:2.41829369066;PAX6:2.39539916377;RFX2..5_RFXANK_RFXAP:2.29898329699;RFX1:2.27254341231;POU6F1:2.26259294243;BPTF:2.22188722159;GFI1B:2.219546202;ZNF384:2.20793574025;PATZ1:2.19119438812;PAX5:2.1631006616;NFIL3:2.14739402179;ARID5B:2.12366360219;IKZF2:2.11395465688;TGIF1:2.10508273058;HIC1:2.07019174606;HMGA1,2:2.04788978528;FOXP1:2.01266409919;KLF4:1.98205459504;BREu{core}:1.87325792242;SOX{8,9,10}:1.87311989281;POU3F1..4:1.83958840302;NFIX:1.81903500705;HBP1_HMGB_SSRP1_UBTF:1.77631586915;LMO2:1.76541140823;FOX{F1,F2,J1}:1.71034585152;MAZ:1.68796488154;SMAD1..7,9:1.61561501723;NRF1:1.60685250339;SOX5:1.60520244438;HOX{A4,D4}:1.5470351033;TEF:1.53626509706;NKX6-1,2:1.47701454406;TFDP1:1.46567621881;FOXP3:1.43421362013;T:1.3805196264;ALX1:1.37620685158;EP300:1.30696383302;GCM1,2:1.2673126486;NANOG:1.25267852875;JUN:1.23316524377;STAT1,3:1.22387701195;SOX17:1.21867327739;POU1F1:1.1939317036;EBF1:1.17587680974;MAFB:1.16083475802;LEF1_TCF7_TCF7L1,2:1.15999627424;HAND1,2:1.11637427701;XBP1:1.07748107114;RBPJ:1.07286683553;ONECUT1,2:1.04040246865;ZNF143:0.9969450018;FOX{D1,D2}:0.966254909322;ADNP_IRX_SIX_ZHX:0.933310576647;FOXL1:0.920822941988;ZNF238:0.874133955281;SP1:0.857435036446;STAT2,4,6:0.856522241158;AR:0.842789077818;ZBTB16:0.838996156786;NR3C1:0.826997260669;SPZ1:0.820496149995;MYOD1:0.811348244491;TOPORS:0.801665905676;GTF2A1,2:0.691291983865;SREBF1,2:0.67997274571;NKX2-3_NKX2-5:0.678458672762;TLX1..3_NFIC{dimer}:0.673017673744;ESRRA:0.645917330808;FOXN1:0.61463033244;ZEB1:0.598397827282;TFAP2{A,C}:0.597654708914;PBX1:0.582292716655;CRX:0.56981524989;CREB1:0.51584031216;TLX2:0.515822291558;HMX1:0.50617846536;MYBL2:0.50429919472;GZF1:0.497515915358;MEF2{A,B,C,D}:0.425338666209;ATF5_CREB3:0.390331973204;AIRE:0.378965494609;UFEwm:0.360712763003;RORA:0.326053575888;GFI1:0.301302663405;FOXO1,3,4:0.233586606241;ZNF423:0.204916161862;ZIC1..3:0.175511488692;IRF7:0.141645365403;FOXA2:0.0757174511461;YY1:0.0424862438569;FOX{I1,J2}:0.0235179501448;DMAP1_NCOR{1,2}_SMARC:0.00895351454877;PAX2:-0.00835285830532;NKX3-1:-0.0168973886548;CDX1,2,4:-0.0239320062183;ATF4:-0.04700131223;HSF1,2:-0.0473015053195;NFATC1..3:-0.0712152895731;NFY{A,B,C}:-0.0815008777447;PAX3,7:-0.0981228312954;TBX4,5:-0.19387004622;IKZF1:-0.197684728477;IRF1,2:-0.205544777676;NFE2L2:-0.239417424265;HOX{A6,A7,B6,B7}:-0.269761545089;NKX2-2,8:-0.309458013609;LHX3,4:-0.31899385631;EVI1:-0.352893179741;HIF1A:-0.374862751911;PDX1:-0.378743766596;PAX1,9:-0.379721464853;SPI1:-0.438565636227;XCPE1{core}:-0.454201427984;NANOG{mouse}:-0.489654470546;SNAI1..3:-0.499451868344;VSX1,2:-0.508431841771;CEBPA,B_DDIT3:-0.510306315635;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.541381394471;NFE2:-0.573633404557;bHLH_family:-0.593401393606;NFE2L1:-0.593962262551;SPIB:-0.773790438322;ATF6:-0.828131635139;PITX1..3:-0.841707855247;GATA6:-0.857117611784;ETS1,2:-0.892440251973;HNF1A:-1.08298719315;FOSL2:-1.09780370055;BACH2:-1.09796329324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10061134445;TP53:-1.11527422237;PAX8:-1.1203964022;TAL1_TCF{3,4,12}:-1.15113326937;NR1H4:-1.16043439201;HNF4A_NR2F1,2:-1.16901134883;E2F1..5:-1.16962458757;TEAD1:-1.17147478625;FOS_FOS{B,L1}_JUN{B,D}:-1.17437381625;NR5A1,2:-1.27283139839;TFCP2:-1.29641899602;NFKB1_REL_RELA:-1.2990395968;POU2F1..3:-1.31651341592;RUNX1..3:-1.34097578894;TFAP4:-1.34986647471;GLI1..3:-1.4068071297;RXRA_VDR{dimer}:-1.48754516291;ALX4:-1.48816839285;ELK1,4_GABP{A,B1}:-1.51402212844;NKX2-1,4:-1.51711454897;ZNF148:-1.52000673373;HLF:-1.55388989862;ELF1,2,4:-1.55756250677;RXR{A,B,G}:-1.58633605086;PPARG:-1.62084288297;TBP:-1.68060687906;MYB:-1.75860180603;ESR1:-1.77772562245;SRF:-2.00214295858;STAT5{A,B}:-2.06802130965;HOX{A5,B5}:-2.30642319125;NR6A1:-2.36367092512;EN1,2:-2.53523135548;HES1:-2.75754948935 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10157-103A4;search_select_hide=table117:FF:10157-103A4 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | parietal lobe, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12317 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12317
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12317
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0594 |
| 10 | 10 | 0.0553 |
| 100 | 100 | 0.308 |
| 101 | 101 | 0.573 |
| 102 | 102 | 0.866 |
| 103 | 103 | 0.13 |
| 104 | 104 | 0.125 |
| 105 | 105 | 0.127 |
| 106 | 106 | 0.0433 |
| 107 | 107 | 0.0941 |
| 108 | 108 | 0.965 |
| 109 | 109 | 0.00245 |
| 11 | 11 | 0.0124 |
| 110 | 110 | 0.0458 |
| 111 | 111 | 0.202 |
| 112 | 112 | 0.49 |
| 113 | 113 | 0.577 |
| 114 | 114 | 0.204 |
| 115 | 115 | 0.942 |
| 116 | 116 | 0.138 |
| 117 | 117 | 0.0103 |
| 118 | 118 | 0.13 |
| 119 | 119 | 0.225 |
| 12 | 12 | 0.46 |
| 120 | 120 | 0.252 |
| 121 | 121 | 0.276 |
| 122 | 122 | 0.859 |
| 123 | 123 | 0.62 |
| 124 | 124 | 0.0833 |
| 125 | 125 | 0.213 |
| 126 | 126 | 0.0281 |
| 127 | 127 | 0.452 |
| 128 | 128 | 0.157 |
| 129 | 129 | 0.599 |
| 13 | 13 | 5.95659e-4 |
| 130 | 130 | 0.123 |
| 131 | 131 | 0.0591 |
| 132 | 132 | 0.666 |
| 133 | 133 | 0.0812 |
| 134 | 134 | 0.675 |
| 135 | 135 | 0.157 |
| 136 | 136 | 0.00129 |
| 137 | 137 | 0.904 |
| 138 | 138 | 0.968 |
| 139 | 139 | 0.122 |
| 14 | 14 | 0.795 |
| 140 | 140 | 0.57 |
| 141 | 141 | 0.7 |
| 142 | 142 | 0.773 |
| 143 | 143 | 0.0874 |
| 144 | 144 | 0.939 |
| 145 | 145 | 0.102 |
| 146 | 146 | 0.471 |
| 147 | 147 | 0.728 |
| 148 | 148 | 0.205 |
| 149 | 149 | 0.228 |
| 15 | 15 | 0.112 |
| 150 | 150 | 0.154 |
| 151 | 151 | 0.624 |
| 152 | 152 | 0.0768 |
| 153 | 153 | 0.814 |
| 154 | 154 | 0.457 |
| 155 | 155 | 0.75 |
| 156 | 156 | 0.452 |
| 157 | 157 | 0.44 |
| 158 | 158 | 0.227 |
| 159 | 159 | 0.0244 |
| 16 | 16 | 0.0434 |
| 160 | 160 | 0.236 |
| 161 | 161 | 0.23 |
| 162 | 162 | 0.732 |
| 163 | 163 | 0.685 |
| 164 | 164 | 0.0479 |
| 165 | 165 | 0.0452 |
| 166 | 166 | 0.894 |
| 167 | 167 | 0.889 |
| 168 | 168 | 0.426 |
| 169 | 169 | 0.0104 |
| 17 | 17 | 0.133 |
| 18 | 18 | 0.143 |
| 19 | 19 | 0.186 |
| 2 | 2 | 0.851 |
| 20 | 20 | 0.125 |
| 21 | 21 | 0.0627 |
| 22 | 22 | 0.177 |
| 23 | 23 | 0.499 |
| 24 | 24 | 0.0293 |
| 25 | 25 | 0.514 |
| 26 | 26 | 1.51688e-4 |
| 27 | 27 | 0.812 |
| 28 | 28 | 0.608 |
| 29 | 29 | 0.0107 |
| 3 | 3 | 0.0531 |
| 30 | 30 | 0.974 |
| 31 | 31 | 0.856 |
| 32 | 32 | 0.0266 |
| 33 | 33 | 0.0477 |
| 34 | 34 | 0.606 |
| 35 | 35 | 0.679 |
| 36 | 36 | 0.168 |
| 37 | 37 | 0.0391 |
| 38 | 38 | 0.363 |
| 39 | 39 | 0.232 |
| 4 | 4 | 0.783 |
| 40 | 40 | 0.0239 |
| 41 | 41 | 0.289 |
| 42 | 42 | 0.247 |
| 43 | 43 | 0.12 |
| 44 | 44 | 0.203 |
| 45 | 45 | 0.658 |
| 46 | 46 | 0.0832 |
| 47 | 47 | 0.0594 |
| 48 | 48 | 0.049 |
| 49 | 49 | 0.21 |
| 5 | 5 | 0.689 |
| 50 | 50 | 0.333 |
| 51 | 51 | 0.388 |
| 52 | 52 | 0.474 |
| 53 | 53 | 0.911 |
| 54 | 54 | 0.332 |
| 55 | 55 | 0.672 |
| 56 | 56 | 0.436 |
| 57 | 57 | 0.377 |
| 58 | 58 | 0.377 |
| 59 | 59 | 0.0773 |
| 6 | 6 | 0.933 |
| 60 | 60 | 0.0749 |
| 61 | 61 | 0.0523 |
| 62 | 62 | 0.23 |
| 63 | 63 | 0.187 |
| 64 | 64 | 0.22 |
| 65 | 65 | 0.28 |
| 66 | 66 | 0.13 |
| 67 | 67 | 0.442 |
| 68 | 68 | 0.0948 |
| 69 | 69 | 0.323 |
| 7 | 7 | 0.0522 |
| 70 | 70 | 0.0494 |
| 71 | 71 | 0.0122 |
| 72 | 72 | 0.4 |
| 73 | 73 | 0.0268 |
| 74 | 74 | 0.781 |
| 75 | 75 | 0.0421 |
| 76 | 76 | 0.472 |
| 77 | 77 | 0.148 |
| 78 | 78 | 0.00284 |
| 79 | 79 | 0.402 |
| 8 | 8 | 0.0551 |
| 80 | 80 | 0.418 |
| 81 | 81 | 0.709 |
| 82 | 82 | 0.634 |
| 83 | 83 | 0.0323 |
| 84 | 84 | 0.666 |
| 85 | 85 | 0.274 |
| 86 | 86 | 0.235 |
| 87 | 87 | 7.28769e-5 |
| 88 | 88 | 0.82 |
| 89 | 89 | 0.408 |
| 9 | 9 | 0.329 |
| 90 | 90 | 0.135 |
| 91 | 91 | 0.921 |
| 92 | 92 | 0.613 |
| 93 | 93 | 0.93 |
| 94 | 94 | 0.206 |
| 95 | 95 | 0.0125 |
| 96 | 96 | 0.838 |
| 97 | 97 | 0.718 |
| 98 | 98 | 0.299 |
| 99 | 99 | 0.51 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12317
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010034 human parietal lobe - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010034 (human parietal lobe - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
