FF:10424-106D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005168 | ||
|HumanCAGEScanFiles=NCig10068;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008013;DRR008885;DRZ000310;DRZ001695;DRZ011660;DRZ013045 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002106,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100104 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.58!383.47!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.34!219.57!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.17!146.91!PLEK;;chr1:25291475..25291511,-!p2@RUNX3!2.14!137.42!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!2.04!109.04!SPI1;;chr17:38020392..38020477,-!p1@IKZF3!1.92!82.55!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.90!576.36!MEF2C;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.90!78.25!MEF2B;;chr1:170632051..170632081,+!p16@PRRX1!1.85!69.86!PRRX1;;chr14:75988771..75988826,+!p1@BATF!1.73!69.16!BATF;;chr1:170632115..170632136,+!p9@PRRX1!1.70!49.07!PRRX1;;chr19:36204309..36204335,+!p1@ZBTB32!1.69!47.87!ZBTB32;;chr7:28452130..28452154,+!p10@CREB5!1.67!46.17!CREB5;;chr14:75988831..75988847,+!p2@BATF!1.67!45.27!BATF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!45.27!ZBED1;;chr1:170632028..170632043,+!p20@PRRX1!1.61!39.28!PRRX1;;chr16:85932760..85932775,+!p1@IRF8!1.57!36.38!IRF8;;chr1:3569072..3569093,+!p1@TP73!1.56!35.28!TP73;;chr5:88179017..88179046,-!p2@MEF2C!1.52!124.63!MEF2C;;chr2:231090433..231090469,+!p1@SP140!1.51!31.18!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.48!29.18!PLEK;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.48!PRRX1;;chr19:50922187..50922204,+!p1@SPIB!1.46!27.58!SPIB;;chr1:25256756..25256774,-!p1@RUNX3!1.44!49.57!RUNX3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.44!36.88!NFKBIZ;;chr12:103351444..103351461,+!p1@ASCL1!1.42!25.29!ASCL1;;chr1:25291620..25291635,-!p4@RUNX3!1.37!22.39!RUNX3;;chr1:170632137..170632172,+!p10@PRRX1!1.37!22.29!PRRX1;;chr2:231090471..231090504,+!p2@SP140!1.34!20.79!SP140;;chr2:68615031..68615055,+!p3@PLEK!1.31!19.19!PLEK;;chr20:50159198..50159299,-!p1@NFATC2!1.28!25.98!NFATC2;;chr4:185395590..185395627,-!p3@IRF2!1.27!21.79!IRF2;;chr12:103352277..103352324,+!p2@ASCL1!1.27!17.49!ASCL1;;chr11:47236584..47236679,+!p1@DDB2!1.26!182.39!DDB2;;chr10:35415951..35415975,+!p8@CREM!1.26!23.69!CREM;;chr19:44617476..44617478,+!p3@ZNF225!1.26!17.19!ZNF225;;chr19:50432453..50432468,+!p1@ATF5!1.24!890.38!ATF5;;chr8:135614084..135614119,-!p4@ZFAT!1.24!16.39!ZFAT;;chr7:28610099..28610113,+!p5@CREB5!1.24!16.29!CREB5;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.58!EBF1;;chr5:142780237..142780261,-!p7@NR3C1!1.23!15.79!NR3C1;;chr8:72756667..72756736,-!p2@MSC!1.21!23.59!MSC;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.49!ZNF385A;;chr5:88179518..88179569,-!p5@MEF2C!1.19!19.09!MEF2C;;chr15:60884706..60884743,-!p1@RORA!1.18!71.76!RORA;;chr5:142780189..142780223,-!p6@NR3C1!1.16!13.29!NR3C1;;chr19:42636586..42636607,-!p1@POU2F2!1.14!35.68!POU2F2;;chr16:85936412..85936431,+!p2@IRF8!1.14!12.79!IRF8;;chr19:45579725..45579743,-!p1@ZNF296!1.13!55.87!ZNF296;;chr1:151319654..151319698,-!p2@RFX5!1.13!27.58!RFX5;;chr8:135614120..135614149,-!p5@ZFAT!1.12!12.19!ZFAT;;chr10:104155480..104155534,+!p2@NFKB2!1.11!76.65!NFKB2;;chr8:72756637..72756664,-!p3@MSC!1.10!13.29!MSC;;chr7:50344251..50344288,+!p3@IKZF1!1.10!11.59!IKZF1;;chr9:126774018..126774055,+!p1@LHX2!1.09!11.19!LHX2;;chr2:61108695..61108753,+!p1@REL!1.08!77.05!REL;;chr4:26322267..26322334,+!p3@RBPJ!1.07!26.38!RBPJ;;chr12:54447599..54447630,+!p3@HOXC4!1.07!13.19!HOXC4;;chr16:85936539..85936562,+!p3@IRF8!1.07!10.79!IRF8;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.59!PRRX1;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.39!TCF4;;chr19:19729477..19729542,-!p1@PBX4!1.04!21.79!PBX4;;chr4:185395633..185395651,-!p2@IRF2!1.03!15.79!IRF2;;chr14:75988851..75988862,+!p3@BATF!1.03!9.69!BATF;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.19!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!8.99!IKZF2;;chr13:41593425..41593480,-!p1@ELF1!0.99!56.67!ELF1;;chr12:11802753..11802834,+!p2@ETV6!0.99!44.37!ETV6;;chr2:214015111..214015179,-!p1@IKZF2!0.99!15.99!IKZF2;;chr17:38020557..38020572,-!p4@IKZF3!0.99!8.69!IKZF3;;chr9:117150254..117150271,-!p1@AKNA!0.98!23.99!AKNA;;chr11:615570..615721,-!p2@IRF7!0.98!17.19!IRF7;;chr7:128577972..128578047,+!p1@IRF5!0.98!13.59!IRF5;;chr11:19262421..19262455,-!p3@E2F8!0.98!8.59!E2F8;;chr6:106534192..106534224,+!p1@PRDM1!0.97!24.39!PRDM1;;chr8:72756063..72756125,-!p1@MSC!0.97!17.09!MSC;;chr7:50343634..50343717,+!p2@IKZF1!0.97!8.40!IKZF1;;chr12:54785054..54785072,-!p4@ZNF385A!0.96!9.29!ZNF385A;;chr1:14057463..14057496,+!p4@PRDM2!0.96!8.20!PRDM2;;chr1:25291648..25291665,-!p7@RUNX3!0.95!8.00!RUNX3;;chr16:31885093..31885165,+!p1@ZNF267!0.94!121.23!ZNF267;;chr5:133450365..133450444,+!p1@TCF7!0.94!36.28!TCF7;;chr8:135577829..135577861,-!p6@ZFAT!0.94!7.80!ZFAT;;chr10:104154246..104154347,+!p3@NFKB2!0.92!46.47!NFKB2;;chr1:170632439..170632465,+!p11@PRRX1!0.92!7.40!PRRX1;;chr2:231090344..231090361,-!p3@SP110!0.92!7.40!SP110;;chr9:2015335..2015370,+!p1@SMARCA2!0.91!89.85!SMARCA2;;chr9:2158443..2158481,+!p2@SMARCA2!0.91!20.99!SMARCA2;;chr6:106534230..106534254,+!p2@PRDM1!0.90!17.99!PRDM1;;chr10:64576105..64576133,-!p1@EGR2!0.90!14.69!EGR2;;chr19:42627037..42627084,-!p3@POU2F2!0.90!7.00!POU2F2;;chr4:109089901..109089930,-!p3@LEF1!0.90!6.90!LEF1;;chr2:68615063..68615089,+!p4@PLEK!0.89!6.80!PLEK;;chr1:167298300..167298319,+!p2@POU2F1!0.89!6.70!POU2F1;;chr5:88120151..88120177,-!p6@MEF2C!0.88!6.60!MEF2C;;chr9:2015306..2015323,+!p3@SMARCA2!0.87!17.49!SMARCA2;;chr4:26321361..26321377,+!p6@RBPJ!0.87!8.20!RBPJ;;chr11:47400062..47400077,-!p2@SPI1!0.87!6.40!SPI1;;chr1:170633348..170633399,+!p2@PRRX1!0.85!8.40!PRRX1;;chr4:106068026..106068084,+!p1@TET2!0.84!57.37!TET2;;chr5:142782823..142782854,-!p3@NR3C1!0.84!8.79!NR3C1;;chr2:214015343..214015366,-!p3@IKZF2!0.84!5.90!IKZF2;;chr2:148778973..148779035,+!p3@MBD5!0.83!15.89!MBD5;;chr1:158979686..158979745,+!p1@IFI16!0.82!200.08!IFI16;;chr1:170632477..170632506,+!p6@PRRX1!0.82!5.60!PRRX1;;chr5:158526756..158526797,-!p3@EBF1!0.82!5.60!EBF1;;chr7:64838786..64838809,+!p2@ZNF92!0.81!33.18!ZNF92;;chr5:321810..321877,+!p1@AHRR!0.81!18.59!AHRR;;chr8:135613895..135613921,-!p8@ZFAT!0.81!5.40!ZFAT;;chr19:50435736..50435781,+!p3@ATF5!0.79!7.40!ATF5;;chr7:50348268..50348366,+!p4@IKZF1!0.79!5.20!IKZF1;;chr6:41673552..41673571,-!p10@TFEB!0.79!5.10!TFEB;;chr7:115799942..115799955,-!p5@TFEC!0.78!5.00!TFEC;;chr2:214013461..214013517,-!p6@IKZF2!0.78!5.00!IKZF2;;chr3:141747459..141747475,-!p1@TFDP2!0.77!44.57!TFDP2;;chr18:51751066..51751077,-!p6@MBD2!0.77!7.60!MBD2;;chr6:41700616..41700664,-!p8@TFEB!0.77!4.90!TFEB;;chr20:46130619..46130664,+!p1@NCOA3!0.76!141.82!NCOA3;;chr2:61108650..61108687,+!p2@REL!0.76!25.68!REL;;chr17:41739283..41739297,-!p1@MEOX1!0.76!4.80!MEOX1;;chr6:106546731..106546755,+!p5@PRDM1!0.76!4.80!PRDM1;;chr3:141747950..141748004,-!p7@TFDP2!0.76!4.70!TFDP2;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.70!HOXC4;;chr1:3569135..3569150,+!p3@TP73!0.76!4.70!TP73;;chr20:56195474..56195506,-!p1@ZBP1!0.76!4.70!ZBP1;;chr11:615942..615957,-!p1@IRF7!0.75!48.37!IRF7;;chr2:68615096..68615115,+!p5@PLEK!0.75!4.60!PLEK;;chr5:142780280..142780294,-!p16@NR3C1!0.75!4.60!NR3C1;;chr10:35415978..35416050,+!p5@CREM!0.74!20.79!CREM;;chr3:178789993..178790049,-!p5@ZMAT3!0.74!6.80!ZMAT3;;chr9:37034469..37034474,-!p1@PAX5!0.74!4.50!PAX5;;chr12:77459306..77459365,-!p1@E2F7!0.73!61.26!E2F7;;chr7:28448965..28448994,+!p2@CREB5!0.73!16.89!CREB5;;chr5:88185134..88185147,-!p15@MEF2C!0.73!4.40!MEF2C;;chr11:19262461..19262476,-!p5@E2F8!0.73!4.40!E2F8;;chr10:35415882..35415941,+!p4@CREM!0.72!21.09!CREM;;chr19:1652555..1652568,-!p2@TCF3!0.72!19.39!TCF3;;chr15:74833584..74833626,+!p1@ARID3B!0.72!10.79!ARID3B;;chr5:124084466..124084484,-!p6@ZNF608!0.72!4.30!ZNF608;;chr9:126773880..126773895,+!p2@LHX2!0.72!4.30!LHX2;;chr1:170632108..170632114,+!p29@PRRX1!0.72!4.30!PRRX1;;chr7:28452103..28452108,+!p24@CREB5!0.72!4.20!CREB5;;chr7:64363638..64363667,+!p1@ZNF273!0.71!23.39!ZNF273;;chr11:47237922..47237964,+!p4@DDB2!0.71!4.90!DDB2;;chr5:124082580..124082603,-!p4@ZNF608!0.71!4.80!ZNF608;;chr18:52989001..52989030,-!p10@TCF4!0.71!4.60!TCF4;;chr9:37027156..37027193,-!p4@PAX5!0.71!4.10!PAX5;;chr19:20011744..20011770,+!p1@ZNF93!0.70!17.29!ZNF93;;chr6:106546808..106546833,+!p3@PRDM1!0.70!5.20!PRDM1;;chr6:41701581..41701613,-!p2@TFEB!0.70!4.00!TFEB;;chr10:96122645..96122675,-!p2@NOC3L!0.69!20.69!NOC3L;;chr17:41277372..41277418,-!p1@BRCA1!0.69!15.79!BRCA1;;chr18:52989081..52989117,-!p7@TCF4!0.69!6.30!TCF4;;chr8:72756267..72756296,-!p4@MSC!0.69!6.10!MSC;;chr12:103351813..103351844,+!p4@ASCL1!0.69!3.90!ASCL1;;chr1:3569101..3569115,+!p2@TP73!0.69!3.90!TP73;;chr10:96122682..96122730,-!p1@NOC3L!0.68!63.86!NOC3L;;chr19:20188776..20188826,+!p1@ZNF90!0.68!11.39!ZNF90;;chr1:170632683..170632696,+!p12@PRRX1!0.68!3.80!PRRX1;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.97!HMGA1;;chr7:77428066..77428132,+!p2@PHTF2!0.67!27.08!PHTF2;;chr7:28610060..28610073,+!p9@CREB5!0.67!3.70!CREB5;;chr8:135613849..135613883,-!p7@ZFAT!0.67!3.70!ZFAT;;chr1:3568928..3568946,+!p4@TP73!0.67!3.70!TP73;;chr19:19976683..19976709,+!p1@ZNF253!0.66!17.99!ZNF253;;chr1:3568961..3568973,+!p6@TP73!0.66!3.60!TP73;;chr5:142779999..142780026,-!p20@NR3C1!0.66!3.60!NR3C1;;chr6:152011654..152011682,+!p1@ESR1!0.66!3.60!ESR1;;chr9:2158487..2158498,+!p21@SMARCA2!0.66!3.60!SMARCA2;;chr9:3525910..3525955,-!p4@RFX3!0.65!11.69!RFX3;;chr12:51566562..51566584,-!p2@TFCP2!0.65!10.99!TFCP2;;chr5:88179195..88179224,-!p3@MEF2C!0.65!5.90!MEF2C;;chr19:926001..926046,+!p1@ARID3A!0.64!13.39!ARID3A;;chr2:231084659..231084721,-!p1@SP110!0.63!90.25!SP110;;chr14:55493763..55493824,-!p1@WDHD1!0.63!28.68!WDHD1;;chr19:45252008..45252024,+!p2@BCL3!0.63!12.29!BCL3;;chr19:20011775..20011800,+!p2@ZNF93!0.63!6.40!ZNF93;;chr1:170632723..170632739,+!p8@PRRX1!0.63!3.30!PRRX1;;chrX:47509928..47509990,-!p1@ELK1!0.62!117.13!ELK1;;chr1:117602932..117602973,+!p1@TTF2!0.62!13.69!TTF2;;chr6:12008986..12009016,+!p3@HIVEP1!0.62!11.39!HIVEP1;;chr8:135614159..135614170,-!p13@ZFAT!0.62!3.20!ZFAT;;chr17:40440359..40440386,+!p4@STAT5A!0.62!3.20!STAT5A;;chr4:109089095..109089144,-!p6@LEF1!0.62!3.20!LEF1;;chr7:64126503..64126528,+!p1@ZNF107!0.61!25.58!ZNF107;;chr5:124084493..124084524,-!p2@ZNF608!0.61!7.70!ZNF608;;chr1:23857698..23857733,-!p1@E2F2!0.61!6.30!E2F2;;chr4:87857491..87857519,+!p10@AFF1!0.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| |expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.58!383.47!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.34!219.57!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.17!146.91!PLEK;;chr1:25291475..25291511,-!p2@RUNX3!2.14!137.42!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!2.04!109.04!SPI1;;chr17:38020392..38020477,-!p1@IKZF3!1.92!82.55!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.90!576.36!MEF2C;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.90!78.25!MEF2B;;chr1:170632051..170632081,+!p16@PRRX1!1.85!69.86!PRRX1;;chr14:75988771..75988826,+!p1@BATF!1.73!69.16!BATF;;chr1:170632115..170632136,+!p9@PRRX1!1.70!49.07!PRRX1;;chr19:36204309..36204335,+!p1@ZBTB32!1.69!47.87!ZBTB32;;chr7:28452130..28452154,+!p10@CREB5!1.67!46.17!CREB5;;chr14:75988831..75988847,+!p2@BATF!1.67!45.27!BATF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!45.27!ZBED1;;chr1:170632028..170632043,+!p20@PRRX1!1.61!39.28!PRRX1;;chr16:85932760..85932775,+!p1@IRF8!1.57!36.38!IRF8;;chr1:3569072..3569093,+!p1@TP73!1.56!35.28!TP73;;chr5:88179017..88179046,-!p2@MEF2C!1.52!124.63!MEF2C;;chr2:231090433..231090469,+!p1@SP140!1.51!31.18!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.48!29.18!PLEK;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.48!PRRX1;;chr19:50922187..50922204,+!p1@SPIB!1.46!27.58!SPIB;;chr1:25256756..25256774,-!p1@RUNX3!1.44!49.57!RUNX3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.44!36.88!NFKBIZ;;chr12:103351444..103351461,+!p1@ASCL1!1.42!25.29!ASCL1;;chr1:25291620..25291635,-!p4@RUNX3!1.37!22.39!RUNX3;;chr1:170632137..170632172,+!p10@PRRX1!1.37!22.29!PRRX1;;chr2:231090471..231090504,+!p2@SP140!1.34!20.79!SP140;;chr2:68615031..68615055,+!p3@PLEK!1.31!19.19!PLEK;;chr20:50159198..50159299,-!p1@NFATC2!1.28!25.98!NFATC2;;chr4:185395590..185395627,-!p3@IRF2!1.27!21.79!IRF2;;chr12:103352277..103352324,+!p2@ASCL1!1.27!17.49!ASCL1;;chr11:47236584..47236679,+!p1@DDB2!1.26!182.39!DDB2;;chr10:35415951..35415975,+!p8@CREM!1.26!23.69!CREM;;chr19:44617476..44617478,+!p3@ZNF225!1.26!17.19!ZNF225;;chr19:50432453..50432468,+!p1@ATF5!1.24!890.38!ATF5;;chr8:135614084..135614119,-!p4@ZFAT!1.24!16.39!ZFAT;;chr7:28610099..28610113,+!p5@CREB5!1.24!16.29!CREB5;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.58!EBF1;;chr5:142780237..142780261,-!p7@NR3C1!1.23!15.79!NR3C1;;chr8:72756667..72756736,-!p2@MSC!1.21!23.59!MSC;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.49!ZNF385A;;chr5:88179518..88179569,-!p5@MEF2C!1.19!19.09!MEF2C;;chr15:60884706..60884743,-!p1@RORA!1.18!71.76!RORA;;chr5:142780189..142780223,-!p6@NR3C1!1.16!13.29!NR3C1;;chr19:42636586..42636607,-!p1@POU2F2!1.14!35.68!POU2F2;;chr16:85936412..85936431,+!p2@IRF8!1.14!12.79!IRF8;;chr19:45579725..45579743,-!p1@ZNF296!1.13!55.87!ZNF296;;chr1:151319654..151319698,-!p2@RFX5!1.13!27.58!RFX5;;chr8:135614120..135614149,-!p5@ZFAT!1.12!12.19!ZFAT;;chr10:104155480..104155534,+!p2@NFKB2!1.11!76.65!NFKB2;;chr8:72756637..72756664,-!p3@MSC!1.10!13.29!MSC;;chr7:50344251..50344288,+!p3@IKZF1!1.10!11.59!IKZF1;;chr9:126774018..126774055,+!p1@LHX2!1.09!11.19!LHX2;;chr2:61108695..61108753,+!p1@REL!1.08!77.05!REL;;chr4:26322267..26322334,+!p3@RBPJ!1.07!26.38!RBPJ;;chr12:54447599..54447630,+!p3@HOXC4!1.07!13.19!HOXC4;;chr16:85936539..85936562,+!p3@IRF8!1.07!10.79!IRF8;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.59!PRRX1;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.39!TCF4;;chr19:19729477..19729542,-!p1@PBX4!1.04!21.79!PBX4;;chr4:185395633..185395651,-!p2@IRF2!1.03!15.79!IRF2;;chr14:75988851..75988862,+!p3@BATF!1.03!9.69!BATF;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.19!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!8.99!IKZF2;;chr13:41593425..41593480,-!p1@ELF1!0.99!56.67!ELF1;;chr12:11802753..11802834,+!p2@ETV6!0.99!44.37!ETV6;;chr2:214015111..214015179,-!p1@IKZF2!0.99!15.99!IKZF2;;chr17:38020557..38020572,-!p4@IKZF3!0.99!8.69!IKZF3;;chr9:117150254..117150271,-!p1@AKNA!0.98!23.99!AKNA;;chr11:615570..615721,-!p2@IRF7!0.98!17.19!IRF7;;chr7:128577972..128578047,+!p1@IRF5!0.98!13.59!IRF5;;chr11:19262421..19262455,-!p3@E2F8!0.98!8.59!E2F8;;chr6:106534192..106534224,+!p1@PRDM1!0.97!24.39!PRDM1;;chr8:72756063..72756125,-!p1@MSC!0.97!17.09!MSC;;chr7:50343634..50343717,+!p2@IKZF1!0.97!8.40!IKZF1;;chr12:54785054..54785072,-!p4@ZNF385A!0.96!9.29!ZNF385A;;chr1:14057463..14057496,+!p4@PRDM2!0.96!8.20!PRDM2;;chr1:25291648..25291665,-!p7@RUNX3!0.95!8.00!RUNX3;;chr16:31885093..31885165,+!p1@ZNF267!0.94!121.23!ZNF267;;chr5:133450365..133450444,+!p1@TCF7!0.94!36.28!TCF7;;chr8:135577829..135577861,-!p6@ZFAT!0.94!7.80!ZFAT;;chr10:104154246..104154347,+!p3@NFKB2!0.92!46.47!NFKB2;;chr1:170632439..170632465,+!p11@PRRX1!0.92!7.40!PRRX1;;chr2:231090344..231090361,-!p3@SP110!0.92!7.40!SP110;;chr9:2015335..2015370,+!p1@SMARCA2!0.91!89.85!SMARCA2;;chr9:2158443..2158481,+!p2@SMARCA2!0.91!20.99!SMARCA2;;chr6:106534230..106534254,+!p2@PRDM1!0.90!17.99!PRDM1;;chr10:64576105..64576133,-!p1@EGR2!0.90!14.69!EGR2;;chr19:42627037..42627084,-!p3@POU2F2!0.90!7.00!POU2F2;;chr4:109089901..109089930,-!p3@LEF1!0.90!6.90!LEF1;;chr2:68615063..68615089,+!p4@PLEK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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0004872,UBERON:0010316 | |||
|fonse_cell_line=FF:0100104 | |fonse_cell_line=FF:0100104 | ||
|fonse_cell_line_closure=FF:0100104 | |fonse_cell_line_closure=FF:0100104 | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10424-106D1 | |id=FF:10424-106D1 | ||
|is_a=EFO:0002091 | |is_a=EFO:0002091;;FF:0000210;;FF:0100104;;UBERON:0002106 | ||
|is_obsolete= | |||
|library_id=CNhs10741 | |||
|library_id_phase_based=2:CNhs10741 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10424 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10424 | |||
|name=splenic lymphoma with villous lymphocytes cell line:SLVL | |name=splenic lymphoma with villous lymphocytes cell line:SLVL | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=NCig10068,,, | |profile_cagescan=NCig10068,,, | ||
|profile_hcage=CNhs10741,LSID692,release008,COMPLETED | |profile_hcage=CNhs10741,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=57.89275 | |rna_weight_ug=57.89275 | ||
|sample_age=70 | |sample_age=70 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1702 | |sample_cell_catalog=RCB1702 | ||
|sample_cell_line=SLVL | |sample_cell_line=SLVL | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.42202881052678e-255!GO:0043227;membrane-bound organelle;2.35165351951261e-225!GO:0043231;intracellular membrane-bound organelle;6.87943248124908e-225!GO:0043226;organelle;1.82043001290804e-217!GO:0043229;intracellular organelle;1.77485129121812e-216!GO:0005737;cytoplasm;4.40205398937113e-167!GO:0044422;organelle part;6.00919918331757e-155!GO:0044446;intracellular organelle part;2.82062953455655e-153!GO:0032991;macromolecular complex;5.6616074844545e-122!GO:0044444;cytoplasmic part;1.506858654528e-116!GO:0005634;nucleus;4.90464164733894e-111!GO:0044237;cellular metabolic process;9.78904311659786e-106!GO:0044238;primary metabolic process;3.82509333503782e-105!GO:0043170;macromolecule metabolic process;8.83929858016918e-100!GO:0030529;ribonucleoprotein complex;1.01842069265278e-98!GO:0044428;nuclear part;2.87977604873823e-98!GO:0043233;organelle lumen;9.62121116395422e-94!GO:0031974;membrane-enclosed lumen;9.62121116395422e-94!GO:0003723;RNA binding;1.68261112351467e-91!GO:0005739;mitochondrion;1.46853313242211e-76!GO:0005515;protein binding;1.00419064178904e-70!GO:0043283;biopolymer metabolic process;2.51336271511372e-65!GO:0006396;RNA processing;1.59167373565912e-64!GO:0043234;protein complex;1.30203432514155e-62!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.37657736416314e-62!GO:0031981;nuclear lumen;1.16703417432487e-60!GO:0006412;translation;2.02596628336651e-59!GO:0010467;gene expression;4.98125998257511e-58!GO:0005840;ribosome;3.26363558471938e-54!GO:0044429;mitochondrial part;9.23776320212882e-53!GO:0016071;mRNA metabolic process;1.10898090869886e-50!GO:0019538;protein metabolic process;1.02615117850596e-49!GO:0031090;organelle membrane;1.21022262430954e-46!GO:0003735;structural constituent of ribosome;2.04875793099017e-46!GO:0031967;organelle envelope;3.02388773720147e-46!GO:0031975;envelope;7.3960982716281e-46!GO:0006259;DNA metabolic process;9.9961698918346e-46!GO:0044267;cellular protein metabolic process;6.99045460696092e-45!GO:0044260;cellular macromolecule metabolic process;2.7427388358309e-44!GO:0008380;RNA splicing;1.91188948644602e-43!GO:0006397;mRNA processing;1.93644726601102e-43!GO:0033036;macromolecule localization;1.9436180871374e-43!GO:0044249;cellular biosynthetic process;1.78082914021084e-41!GO:0009058;biosynthetic process;2.17651111243292e-41!GO:0009059;macromolecule biosynthetic process;4.41988715791115e-41!GO:0003676;nucleic acid binding;1.06187699060157e-40!GO:0015031;protein transport;2.11739578501396e-40!GO:0016043;cellular component organization and biogenesis;2.22154399880143e-40!GO:0033279;ribosomal subunit;2.17057650280518e-39!GO:0005654;nucleoplasm;2.91918006750037e-39!GO:0008104;protein localization;1.09547129915481e-38!GO:0045184;establishment of protein localization;3.82751647278167e-38!GO:0005829;cytosol;2.26957785218259e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.3862947135084e-37!GO:0006996;organelle organization and biogenesis;6.88198283194978e-36!GO:0046907;intracellular transport;1.87445964681414e-34!GO:0065003;macromolecular complex assembly;7.95707145861068e-34!GO:0043228;non-membrane-bound organelle;1.51169595256777e-32!GO:0043232;intracellular non-membrane-bound organelle;1.51169595256777e-32!GO:0000166;nucleotide binding;1.94244140225968e-32!GO:0005681;spliceosome;2.30309728914955e-32!GO:0007049;cell cycle;6.35653310587514e-32!GO:0005740;mitochondrial envelope;7.65816974949427e-32!GO:0006974;response to DNA damage stimulus;8.02280929700673e-32!GO:0006886;intracellular protein transport;5.33447067611035e-31!GO:0031966;mitochondrial membrane;1.28251004210915e-29!GO:0044451;nucleoplasm part;1.91286542745909e-29!GO:0019866;organelle inner membrane;3.65012708550194e-29!GO:0022607;cellular component assembly;4.93597382618567e-29!GO:0016070;RNA metabolic process;8.93301112690982e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.4476013286477e-28!GO:0044445;cytosolic part;6.40900941408256e-27!GO:0022402;cell cycle process;8.39845993349052e-27!GO:0005743;mitochondrial inner membrane;1.40402975234054e-26!GO:0006281;DNA repair;1.92486099439141e-26!GO:0051649;establishment of cellular localization;8.55969568930908e-26!GO:0051641;cellular localization;9.23788243104765e-26!GO:0031980;mitochondrial lumen;1.5252246188373e-24!GO:0005759;mitochondrial matrix;1.5252246188373e-24!GO:0044265;cellular macromolecule catabolic process;8.66247424028663e-24!GO:0006119;oxidative phosphorylation;3.28039808700284e-23!GO:0044455;mitochondrial membrane part;4.47746717694429e-23!GO:0032553;ribonucleotide binding;4.57467724917942e-23!GO:0032555;purine ribonucleotide binding;4.57467724917942e-23!GO:0006512;ubiquitin cycle;4.75673500432339e-23!GO:0017076;purine nucleotide binding;5.59165082053727e-23!GO:0005730;nucleolus;5.95995572387709e-23!GO:0005694;chromosome;6.5873041773094e-23!GO:0005524;ATP binding;7.25300944447868e-23!GO:0000278;mitotic cell cycle;1.17656638126428e-22!GO:0032559;adenyl ribonucleotide binding;2.04488235760213e-22!GO:0016462;pyrophosphatase activity;2.10916257318035e-22!GO:0017111;nucleoside-triphosphatase activity;2.11041139506425e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.64217286386913e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.24955531604053e-22!GO:0030554;adenyl nucleotide binding;4.42696399525942e-22!GO:0008134;transcription factor binding;5.99408651508411e-21!GO:0016874;ligase activity;1.2428194830512e-20!GO:0009057;macromolecule catabolic process;2.39037082632183e-20!GO:0022618;protein-RNA complex assembly;3.21629711739456e-20!GO:0043285;biopolymer catabolic process;3.52574837327897e-20!GO:0015934;large ribosomal subunit;3.56816366462565e-20!GO:0015935;small ribosomal subunit;3.63492459145317e-20!GO:0009719;response to endogenous stimulus;3.86392703799276e-20!GO:0022403;cell cycle phase;4.90869091359365e-20!GO:0000087;M phase of mitotic cell cycle;8.86772783596593e-20!GO:0044427;chromosomal part;1.06154860208111e-19!GO:0051276;chromosome organization and biogenesis;1.43325776931626e-19!GO:0007067;mitosis;2.01655955543814e-19!GO:0006260;DNA replication;2.9040817077697e-19!GO:0044248;cellular catabolic process;4.99895518551257e-19!GO:0019941;modification-dependent protein catabolic process;5.90866859125888e-19!GO:0043632;modification-dependent macromolecule catabolic process;5.90866859125888e-19!GO:0006457;protein folding;6.80373869030474e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;6.80373869030474e-19!GO:0016887;ATPase activity;1.00020419891671e-18!GO:0012501;programmed cell death;1.33860979971565e-18!GO:0044257;cellular protein catabolic process;1.40803388873241e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.45944585003997e-18!GO:0006915;apoptosis;1.85438590009756e-18!GO:0042623;ATPase activity, coupled;4.22998445680339e-18!GO:0000279;M phase;5.40395361875758e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.07634641653391e-17!GO:0012505;endomembrane system;1.22880819167497e-17!GO:0005746;mitochondrial respiratory chain;1.67877594011494e-17!GO:0051301;cell division;2.82540216883026e-17!GO:0006605;protein targeting;3.46752750280937e-17!GO:0042254;ribosome biogenesis and assembly;6.22199128745353e-17!GO:0043412;biopolymer modification;1.3676142875368e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.48006766916099e-16!GO:0000375;RNA splicing, via transesterification reactions;1.48006766916099e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.48006766916099e-16!GO:0008219;cell death;2.05069428088977e-16!GO:0016265;death;2.05069428088977e-16!GO:0005761;mitochondrial ribosome;2.70139023871474e-16!GO:0000313;organellar ribosome;2.70139023871474e-16!GO:0004386;helicase activity;3.70786469501656e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.43369105516644e-16!GO:0008135;translation factor activity, nucleic acid binding;4.58752138509522e-16!GO:0016604;nuclear body;9.72921978839998e-16!GO:0005635;nuclear envelope;1.04993846718743e-15!GO:0031965;nuclear membrane;3.10127521325141e-15!GO:0006913;nucleocytoplasmic transport;3.18703366128839e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.8386911275041e-15!GO:0003954;NADH dehydrogenase activity;3.8386911275041e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.8386911275041e-15!GO:0051169;nuclear transport;8.82638370905291e-15!GO:0044453;nuclear membrane part;9.19667282520664e-15!GO:0030163;protein catabolic process;1.79243765404762e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.4799057699503e-14!GO:0003712;transcription cofactor activity;2.64874898170567e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93051566899762e-14!GO:0051186;cofactor metabolic process;4.5177065715303e-14!GO:0051726;regulation of cell cycle;5.00799424411105e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;5.20827730211617e-14!GO:0006464;protein modification process;5.5973340267681e-14!GO:0048770;pigment granule;6.51769261842505e-14!GO:0042470;melanosome;6.51769261842505e-14!GO:0043687;post-translational protein modification;6.54125489921877e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.6924405532071e-14!GO:0042773;ATP synthesis coupled electron transport;7.6924405532071e-14!GO:0000074;regulation of progression through cell cycle;7.87289862847315e-14!GO:0006323;DNA packaging;1.15936434036637e-13!GO:0051082;unfolded protein binding;1.31094872231213e-13!GO:0050657;nucleic acid transport;1.45889941484011e-13!GO:0051236;establishment of RNA localization;1.45889941484011e-13!GO:0050658;RNA transport;1.45889941484011e-13!GO:0006403;RNA localization;1.48152986694081e-13!GO:0006399;tRNA metabolic process;1.92247081907166e-13!GO:0044432;endoplasmic reticulum part;3.09743903299052e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.85712964679694e-13!GO:0045271;respiratory chain complex I;3.85712964679694e-13!GO:0005747;mitochondrial respiratory chain complex I;3.85712964679694e-13!GO:0005643;nuclear pore;3.89386062374753e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.07411313855968e-12!GO:0003743;translation initiation factor activity;1.57428566800658e-12!GO:0008026;ATP-dependent helicase activity;1.61856524013083e-12!GO:0065002;intracellular protein transport across a membrane;1.78145557746059e-12!GO:0009259;ribonucleotide metabolic process;2.18251891763199e-12!GO:0006413;translational initiation;3.74461890146408e-12!GO:0016607;nuclear speck;4.25401946467185e-12!GO:0005783;endoplasmic reticulum;4.26276716174568e-12!GO:0006163;purine nucleotide metabolic process;5.36691925345381e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.9635217890503e-12!GO:0006446;regulation of translational initiation;1.09222970775201e-11!GO:0051028;mRNA transport;1.22223556310347e-11!GO:0006364;rRNA processing;1.23574936195672e-11!GO:0042981;regulation of apoptosis;1.24763017002207e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.42508684353233e-11!GO:0009056;catabolic process;1.5281452675197e-11!GO:0006164;purine nucleotide biosynthetic process;1.66537368186912e-11!GO:0043067;regulation of programmed cell death;1.75325064388679e-11!GO:0016568;chromatin modification;1.84442027087946e-11!GO:0006732;coenzyme metabolic process;1.99076489253041e-11!GO:0009260;ribonucleotide biosynthetic process;1.99211364710759e-11!GO:0016072;rRNA metabolic process;2.01525814476213e-11!GO:0008639;small protein conjugating enzyme activity;2.88560646920022e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.32023763520649e-11!GO:0046930;pore complex;3.88399059805706e-11!GO:0009150;purine ribonucleotide metabolic process;4.34188212352255e-11!GO:0004842;ubiquitin-protein ligase activity;5.54021113124059e-11!GO:0019787;small conjugating protein ligase activity;6.73565543980754e-11!GO:0016779;nucleotidyltransferase activity;7.19509630617019e-11!GO:0009152;purine ribonucleotide biosynthetic process;1.34605234745201e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.71318558642445e-10!GO:0043566;structure-specific DNA binding;1.92901233111482e-10!GO:0017038;protein import;2.1637972664431e-10!GO:0005789;endoplasmic reticulum membrane;2.32908697068003e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.63327965113505e-10!GO:0048193;Golgi vesicle transport;4.96462416423047e-10!GO:0006261;DNA-dependent DNA replication;5.15745892533345e-10!GO:0006461;protein complex assembly;5.19020426397778e-10!GO:0016787;hydrolase activity;5.99883549667306e-10!GO:0003697;single-stranded DNA binding;6.25412329472997e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.09624066675224e-10!GO:0007005;mitochondrion organization and biogenesis;1.54070737181954e-09!GO:0050794;regulation of cellular process;1.63130603456434e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.67306701802876e-09!GO:0000785;chromatin;1.90709458685252e-09!GO:0003713;transcription coactivator activity;2.07369331655688e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.45205875180565e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.45205875180565e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.45205875180565e-09!GO:0019829;cation-transporting ATPase activity;2.54893866777374e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.28214485781468e-09!GO:0009055;electron carrier activity;3.45500909509291e-09!GO:0043038;amino acid activation;3.57381689340056e-09!GO:0006418;tRNA aminoacylation for protein translation;3.57381689340056e-09!GO:0043039;tRNA aminoacylation;3.57381689340056e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.7524977776272e-09!GO:0006333;chromatin assembly or disassembly;5.28513320200238e-09!GO:0009615;response to virus;6.5358117346357e-09!GO:0051188;cofactor biosynthetic process;6.6143288222369e-09!GO:0005794;Golgi apparatus;8.2724415610361e-09!GO:0006366;transcription from RNA polymerase II promoter;8.8942903480797e-09!GO:0016881;acid-amino acid ligase activity;8.8942903480797e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.04218448828344e-09!GO:0015986;ATP synthesis coupled proton transport;9.46620412779501e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.46620412779501e-09!GO:0009141;nucleoside triphosphate metabolic process;1.08176317472906e-08!GO:0000075;cell cycle checkpoint;1.12135505477706e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.12135505477706e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.12135505477706e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.32594723121354e-08!GO:0065004;protein-DNA complex assembly;1.40571933054395e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.66225548669007e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.66225548669007e-08!GO:0051246;regulation of protein metabolic process;1.68353818252287e-08!GO:0016563;transcription activator activity;1.69882089837805e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.11901313651606e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.11901313651606e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.71698667859948e-08!GO:0006793;phosphorus metabolic process;3.16486511384988e-08!GO:0006796;phosphate metabolic process;3.16486511384988e-08!GO:0009060;aerobic respiration;3.43713982791222e-08!GO:0008565;protein transporter activity;4.58193425237683e-08!GO:0000245;spliceosome assembly;5.42612126188514e-08!GO:0000775;chromosome, pericentric region;6.05044079846591e-08!GO:0004298;threonine endopeptidase activity;6.81494239092841e-08!GO:0032446;protein modification by small protein conjugation;7.52712279313924e-08!GO:0016740;transferase activity;7.80038995735452e-08!GO:0006754;ATP biosynthetic process;8.16671093338606e-08!GO:0006753;nucleoside phosphate metabolic process;8.16671093338606e-08!GO:0046034;ATP metabolic process;8.65937475942696e-08!GO:0045333;cellular respiration;9.22982328753358e-08!GO:0009108;coenzyme biosynthetic process;1.12161860562412e-07!GO:0051170;nuclear import;1.3253364485211e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.74323444190322e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.81246804980146e-07!GO:0016567;protein ubiquitination;1.86783993019996e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.94316738208496e-07!GO:0016310;phosphorylation;2.18702609910366e-07!GO:0051168;nuclear export;2.36312722196212e-07!GO:0019222;regulation of metabolic process;2.54856379987386e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.60424431927708e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.8565536393822e-07!GO:0006752;group transfer coenzyme metabolic process;3.06863515228365e-07!GO:0006310;DNA recombination;3.48499345756432e-07!GO:0006606;protein import into nucleus;3.71840755581106e-07!GO:0008094;DNA-dependent ATPase activity;3.80549267147719e-07!GO:0009117;nucleotide metabolic process;3.97558912991971e-07!GO:0006099;tricarboxylic acid cycle;3.97558912991971e-07!GO:0046356;acetyl-CoA catabolic process;3.97558912991971e-07!GO:0030120;vesicle coat;4.8291309593495e-07!GO:0030662;coated vesicle membrane;4.8291309593495e-07!GO:0005819;spindle;5.03807548430954e-07!GO:0045259;proton-transporting ATP synthase complex;5.15686950746581e-07!GO:0003899;DNA-directed RNA polymerase activity;5.35307523915185e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.52254585284108e-07!GO:0005768;endosome;6.71362835671163e-07!GO:0007051;spindle organization and biogenesis;8.7370870235211e-07!GO:0016192;vesicle-mediated transport;9.53462434919941e-07!GO:0043623;cellular protein complex assembly;9.7971184930475e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.02452303330975e-06!GO:0007243;protein kinase cascade;1.05933804198026e-06!GO:0005773;vacuole;1.47137212316588e-06!GO:0003724;RNA helicase activity;1.54163387936083e-06!GO:0000323;lytic vacuole;1.68306763896748e-06!GO:0005764;lysosome;1.68306763896748e-06!GO:0048475;coated membrane;1.70044253276816e-06!GO:0030117;membrane coat;1.70044253276816e-06!GO:0006916;anti-apoptosis;1.84467214955253e-06!GO:0005657;replication fork;1.8780546226745e-06!GO:0006084;acetyl-CoA metabolic process;1.98281260950721e-06!GO:0005813;centrosome;2.4245975274098e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.02187721843819e-06!GO:0005667;transcription factor complex;3.1172062120463e-06!GO:0006401;RNA catabolic process;3.8856391357345e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.02791891066959e-06!GO:0015399;primary active transmembrane transporter activity;4.02791891066959e-06!GO:0009109;coenzyme catabolic process;4.07545038768702e-06!GO:0015630;microtubule cytoskeleton;4.25420778330311e-06!GO:0000151;ubiquitin ligase complex;4.40739118746481e-06!GO:0006302;double-strand break repair;4.5302300000622e-06!GO:0045786;negative regulation of progression through cell cycle;4.64384280241854e-06!GO:0051187;cofactor catabolic process;4.8671378415501e-06!GO:0043069;negative regulation of programmed cell death;5.50205174279596e-06!GO:0031323;regulation of cellular metabolic process;5.5486962878274e-06!GO:0005815;microtubule organizing center;5.98436396657947e-06!GO:0007059;chromosome segregation;6.10363937127568e-06!GO:0043066;negative regulation of apoptosis;6.78794396267925e-06!GO:0006613;cotranslational protein targeting to membrane;7.05759792008421e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.28012373435288e-06!GO:0051427;hormone receptor binding;7.94912100567313e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.0383212367341e-05!GO:0003690;double-stranded DNA binding;1.06438227974197e-05!GO:0007088;regulation of mitosis;1.13426400136698e-05!GO:0009165;nucleotide biosynthetic process;1.15556133994219e-05!GO:0005770;late endosome;1.26806378936414e-05!GO:0065009;regulation of a molecular function;1.43770776317806e-05!GO:0050789;regulation of biological process;1.49365298821873e-05!GO:0048523;negative regulation of cellular process;1.56076116812087e-05!GO:0019899;enzyme binding;1.58306331047239e-05!GO:0007093;mitotic cell cycle checkpoint;1.63442279926087e-05!GO:0005793;ER-Golgi intermediate compartment;1.64398472841512e-05!GO:0006402;mRNA catabolic process;1.67499332205819e-05!GO:0008033;tRNA processing;1.70523131438108e-05!GO:0051325;interphase;1.71625602547048e-05!GO:0035257;nuclear hormone receptor binding;1.71625602547048e-05!GO:0008632;apoptotic program;1.74732535884674e-05!GO:0005762;mitochondrial large ribosomal subunit;2.01345461115953e-05!GO:0000315;organellar large ribosomal subunit;2.01345461115953e-05!GO:0043065;positive regulation of apoptosis;2.04274940214392e-05!GO:0016363;nuclear matrix;2.14571791984697e-05!GO:0008168;methyltransferase activity;2.2352862128999e-05!GO:0006417;regulation of translation;2.31347142112357e-05!GO:0051329;interphase of mitotic cell cycle;2.41761835871059e-05!GO:0043021;ribonucleoprotein binding;2.42909204527706e-05!GO:0016564;transcription repressor activity;2.53643434949401e-05!GO:0003714;transcription corepressor activity;2.70046510051717e-05!GO:0006839;mitochondrial transport;2.7827561020355e-05!GO:0043068;positive regulation of programmed cell death;2.90759601680235e-05!GO:0000776;kinetochore;2.94976964479329e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;2.97065467780305e-05!GO:0031072;heat shock protein binding;3.32808805581939e-05!GO:0044452;nucleolar part;3.59714796997506e-05!GO:0031497;chromatin assembly;3.72815483579308e-05!GO:0006350;transcription;3.76605940147514e-05!GO:0006612;protein targeting to membrane;4.89050292171823e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.21090098346563e-05!GO:0003678;DNA helicase activity;5.89093576243734e-05!GO:0005798;Golgi-associated vesicle;6.39023607186702e-05!GO:0000314;organellar small ribosomal subunit;6.39023607186702e-05!GO:0005763;mitochondrial small ribosomal subunit;6.39023607186702e-05!GO:0003684;damaged DNA binding;6.39023607186702e-05!GO:0008186;RNA-dependent ATPase activity;6.58590334213797e-05!GO:0006334;nucleosome assembly;6.69222517777671e-05!GO:0030880;RNA polymerase complex;6.94183928353791e-05!GO:0048522;positive regulation of cellular process;7.6544285967709e-05!GO:0008654;phospholipid biosynthetic process;7.70523369170878e-05!GO:0016491;oxidoreductase activity;7.87670553162035e-05!GO:0031324;negative regulation of cellular metabolic process;8.10565003187174e-05!GO:0006917;induction of apoptosis;8.22182079028765e-05!GO:0007006;mitochondrial membrane organization and biogenesis;8.66190002235664e-05!GO:0004518;nuclease activity;8.94830358971342e-05!GO:0003729;mRNA binding;8.98289433261907e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.59552363911498e-05!GO:0004527;exonuclease activity;0.00011060915840279!GO:0044440;endosomal part;0.000116888078278724!GO:0010008;endosome membrane;0.000116888078278724!GO:0012502;induction of programmed cell death;0.000119023197368629!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000119820736654905!GO:0003682;chromatin binding;0.000121306818596001!GO:0006818;hydrogen transport;0.000125014813500563!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000129993059858475!GO:0000428;DNA-directed RNA polymerase complex;0.000129993059858475!GO:0006383;transcription from RNA polymerase III promoter;0.000130814376949518!GO:0048519;negative regulation of biological process;0.000136764204566337!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000142039772809194!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000145011777836429!GO:0051052;regulation of DNA metabolic process;0.000149417559654873!GO:0016251;general RNA polymerase II transcription factor activity;0.000166269430707641!GO:0006414;translational elongation;0.000192184420635861!GO:0005048;signal sequence binding;0.000193189974688872!GO:0004004;ATP-dependent RNA helicase activity;0.000202062991729186!GO:0006626;protein targeting to mitochondrion;0.000206189328853094!GO:0005885;Arp2/3 protein complex;0.000210769737701551!GO:0010468;regulation of gene expression;0.000215305610284781!GO:0015992;proton transport;0.000215578344123453!GO:0043681;protein import into mitochondrion;0.000232121797142142!GO:0051789;response to protein stimulus;0.000242599610024423!GO:0006986;response to unfolded protein;0.000242599610024423!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000250864257632228!GO:0031326;regulation of cellular biosynthetic process;0.000255049316423604!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000257280613806753!GO:0032508;DNA duplex unwinding;0.00027098307795306!GO:0032392;DNA geometric change;0.00027098307795306!GO:0051252;regulation of RNA metabolic process;0.000305829976109635!GO:0042770;DNA damage response, signal transduction;0.00031497979022841!GO:0006091;generation of precursor metabolites and energy;0.000331114008248821!GO:0046483;heterocycle metabolic process;0.000336142522451833!GO:0030658;transport vesicle membrane;0.000360588408576577!GO:0006352;transcription initiation;0.000383804883735576!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000458636503897682!GO:0005741;mitochondrial outer membrane;0.000469689560285182!GO:0031968;organelle outer membrane;0.000503912258583374!GO:0006950;response to stress;0.000508876218471007!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000508876218471007!GO:0005758;mitochondrial intermembrane space;0.000514210286347739!GO:0044431;Golgi apparatus part;0.000577429289439756!GO:0006405;RNA export from nucleus;0.000583346059761668!GO:0006611;protein export from nucleus;0.000623251269292104!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000623251269292104!GO:0030384;phosphoinositide metabolic process;0.000645296218240965!GO:0019867;outer membrane;0.000646594636756795!GO:0007052;mitotic spindle organization and biogenesis;0.00067640801675359!GO:0022890;inorganic cation transmembrane transporter activity;0.000723398208115899!GO:0006007;glucose catabolic process;0.00074201769641087!GO:0046966;thyroid hormone receptor binding;0.000745716039631788!GO:0006268;DNA unwinding during replication;0.000766169430698309!GO:0016853;isomerase activity;0.000812912656156491!GO:0042802;identical protein binding;0.000833237319323919!GO:0006338;chromatin remodeling;0.00093923892954397!GO:0047485;protein N-terminus binding;0.000972485427518118!GO:0000059;protein import into nucleus, docking;0.00101490539006837!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103406558743958!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103406558743958!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103406558743958!GO:0030660;Golgi-associated vesicle membrane;0.00111733890697692!GO:0003725;double-stranded RNA binding;0.00113167769212298!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00113729360836838!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00119436695042303!GO:0008022;protein C-terminus binding;0.00120058669472776!GO:0005637;nuclear inner membrane;0.00120750292253176!GO:0046489;phosphoinositide biosynthetic process;0.00123719049963026!GO:0009967;positive regulation of signal transduction;0.00123719049963026!GO:0045454;cell redox homeostasis;0.00123918286118632!GO:0048500;signal recognition particle;0.00123918286118632!GO:0050790;regulation of catalytic activity;0.00128145032986606!GO:0005788;endoplasmic reticulum lumen;0.00130073898533151!GO:0032200;telomere organization and biogenesis;0.00131334262461579!GO:0000723;telomere maintenance;0.00131334262461579!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00136622830516544!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00136622830516544!GO:0048471;perinuclear region of cytoplasm;0.00141595895466923!GO:0003924;GTPase activity;0.00141595895466923!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00143335154313286!GO:0006289;nucleotide-excision repair;0.00143443470255846!GO:0031970;organelle envelope lumen;0.00153296151028919!GO:0005774;vacuolar membrane;0.00158240423621492!GO:0005876;spindle microtubule;0.00158611223890548!GO:0009124;nucleoside monophosphate biosynthetic process;0.00159656715607944!GO:0009123;nucleoside monophosphate metabolic process;0.00159656715607944!GO:0051920;peroxiredoxin activity;0.00161126392218803!GO:0031124;mRNA 3'-end processing;0.00161126392218803!GO:0006891;intra-Golgi vesicle-mediated transport;0.00161126392218803!GO:0009892;negative regulation of metabolic process;0.00167241961187328!GO:0043488;regulation of mRNA stability;0.00168407503121357!GO:0043487;regulation of RNA stability;0.00168407503121357!GO:0015631;tubulin binding;0.00171992347995739!GO:0000082;G1/S transition of mitotic cell cycle;0.00175626378967274!GO:0005684;U2-dependent spliceosome;0.00177177013931873!GO:0030867;rough endoplasmic reticulum membrane;0.00178682301123672!GO:0008234;cysteine-type peptidase activity;0.00184966561195694!GO:0003711;transcription elongation regulator activity;0.00185801154138875!GO:0008637;apoptotic mitochondrial changes;0.0018845287805948!GO:0005769;early endosome;0.0019428563028568!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0019428563028568!GO:0015002;heme-copper terminal oxidase activity;0.0019428563028568!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0019428563028568!GO:0004129;cytochrome-c oxidase activity;0.0019428563028568!GO:0016481;negative regulation of transcription;0.00229319922169383!GO:0008139;nuclear localization sequence binding;0.00231443811853355!GO:0006520;amino acid metabolic process;0.00232149726280292!GO:0030518;steroid hormone receptor signaling pathway;0.00232453131417536!GO:0005525;GTP binding;0.00241457703901421!GO:0008312;7S RNA binding;0.00259825407499631!GO:0000922;spindle pole;0.00262894365718001!GO:0019783;small conjugating protein-specific protease activity;0.00263271509316368!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00281547760400207!GO:0009451;RNA modification;0.00281547760400207!GO:0004674;protein serine/threonine kinase activity;0.0028176842000127!GO:0009889;regulation of biosynthetic process;0.00292387073415309!GO:0003677;DNA binding;0.00300576239263673!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00308306242404729!GO:0016126;sterol biosynthetic process;0.00308306242404729!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00310734698532651!GO:0000209;protein polyubiquitination;0.00319857075925506!GO:0006270;DNA replication initiation;0.00319857075925506!GO:0016859;cis-trans isomerase activity;0.00321051294718608!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00321934618606989!GO:0045047;protein targeting to ER;0.00321934618606989!GO:0000049;tRNA binding;0.00327429860974181!GO:0016197;endosome transport;0.00328191370432084!GO:0004843;ubiquitin-specific protease activity;0.00345736274214275!GO:0031570;DNA integrity checkpoint;0.0035604404193813!GO:0044437;vacuolar part;0.00362134595027929!GO:0043596;nuclear replication fork;0.00363164498300571!GO:0032774;RNA biosynthetic process;0.00366672727370715!GO:0009161;ribonucleoside monophosphate metabolic process;0.00366936342235866!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00366936342235866!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00374054329768548!GO:0005765;lysosomal membrane;0.00377472029102542!GO:0000287;magnesium ion binding;0.00378901974414912!GO:0046822;regulation of nucleocytoplasmic transport;0.00387071682712749!GO:0031123;RNA 3'-end processing;0.00398083730620506!GO:0008408;3'-5' exonuclease activity;0.00413048770705651!GO:0000228;nuclear chromosome;0.00416164195280934!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00422339204495824!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00430905460446756!GO:0006351;transcription, DNA-dependent;0.00436660347583037!GO:0000070;mitotic sister chromatid segregation;0.00445972020982411!GO:0006096;glycolysis;0.00453934603851918!GO:0016272;prefoldin complex;0.00461012028965685!GO:0006275;regulation of DNA replication;0.00470618238970175!GO:0046474;glycerophospholipid biosynthetic process;0.00479319324828041!GO:0006650;glycerophospholipid metabolic process;0.00486510552910962!GO:0000819;sister chromatid segregation;0.00486510552910962!GO:0007242;intracellular signaling cascade;0.00487613222514822!GO:0019752;carboxylic acid metabolic process;0.00502153496636171!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00508829985019973!GO:0015980;energy derivation by oxidation of organic compounds;0.0052234144950774!GO:0006144;purine base metabolic process;0.00543852836991543!GO:0033673;negative regulation of kinase activity;0.00560196616314513!GO:0006469;negative regulation of protein kinase activity;0.00560196616314513!GO:0048518;positive regulation of biological process;0.00562919947049746!GO:0004221;ubiquitin thiolesterase activity;0.00564422531127287!GO:0031988;membrane-bound vesicle;0.00565268206078544!GO:0008047;enzyme activator activity;0.00567886142475964!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00567886142475964!GO:0000725;recombinational repair;0.00567886142475964!GO:0000724;double-strand break repair via homologous recombination;0.00567886142475964!GO:0030118;clathrin coat;0.00567886142475964!GO:0030521;androgen receptor signaling pathway;0.00570613061883564!GO:0030663;COPI coated vesicle membrane;0.00576769607414963!GO:0030126;COPI vesicle coat;0.00576769607414963!GO:0046365;monosaccharide catabolic process;0.0059128364800716!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00602197159176741!GO:0000786;nucleosome;0.0061062451732046!GO:0022415;viral reproductive process;0.00611123491375654!GO:0016584;nucleosome positioning;0.00620745910824166!GO:0006082;organic acid metabolic process;0.0062254368225164!GO:0004532;exoribonuclease activity;0.00629032874633445!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00629032874633445!GO:0065007;biological regulation;0.00634021900205453!GO:0000339;RNA cap binding;0.00638521065067254!GO:0019210;kinase inhibitor activity;0.00651526293108576!GO:0007050;cell cycle arrest;0.00653104071627827!GO:0042613;MHC class II protein complex;0.00654756884469021!GO:0051087;chaperone binding;0.00654756884469021!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00658151870599664!GO:0000781;chromosome, telomeric region;0.00659706303546998!GO:0016790;thiolester hydrolase activity;0.00659706303546998!GO:0051348;negative regulation of transferase activity;0.00659722862560125!GO:0008250;oligosaccharyl transferase complex;0.00666877384411687!GO:0048487;beta-tubulin binding;0.00666877384411687!GO:0050662;coenzyme binding;0.00718762719754237!GO:0000726;non-recombinational repair;0.0073960576275256!GO:0004576;oligosaccharyl transferase activity;0.00744672323726317!GO:0006695;cholesterol biosynthetic process;0.00767964009680612!GO:0006378;mRNA polyadenylation;0.00788802933505272!GO:0045449;regulation of transcription;0.00799499039177964!GO:0031902;late endosome membrane;0.00807063168931496!GO:0004860;protein kinase inhibitor activity;0.00809598627294437!GO:0009112;nucleobase metabolic process;0.00815074901357553!GO:0006308;DNA catabolic process;0.00830382872499872!GO:0006595;polyamine metabolic process;0.00838330126748966!GO:0006376;mRNA splice site selection;0.00838330126748966!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00838330126748966!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00840500985722193!GO:0000077;DNA damage checkpoint;0.00841673418742198!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00851695531698277!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00859607296964347!GO:0000139;Golgi membrane;0.00860685248386527!GO:0035258;steroid hormone receptor binding;0.00879160563010754!GO:0004003;ATP-dependent DNA helicase activity;0.00895981003340251!GO:0043022;ribosome binding;0.00940969335341551!GO:0006284;base-excision repair;0.0094764870784063!GO:0045941;positive regulation of transcription;0.00949887866075413!GO:0030134;ER to Golgi transport vesicle;0.00960807053566463!GO:0006400;tRNA modification;0.00964779209319294!GO:0019320;hexose catabolic process;0.00984537720529681!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0100625810956751!GO:0046164;alcohol catabolic process;0.0100692811634202!GO:0030125;clathrin vesicle coat;0.0105947788110881!GO:0030665;clathrin coated vesicle membrane;0.0105947788110881!GO:0030133;transport vesicle;0.0106106408279759!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0106508046856256!GO:0030137;COPI-coated vesicle;0.0108728916882527!GO:0031982;vesicle;0.0108728916882527!GO:0005832;chaperonin-containing T-complex;0.0110877282808612!GO:0000118;histone deacetylase complex;0.0111900135901491!GO:0009081;branched chain family amino acid metabolic process;0.0112653286327961!GO:0046467;membrane lipid biosynthetic process;0.0113755246512715!GO:0051656;establishment of organelle localization;0.0115754895614822!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0117311685882297!GO:0043621;protein self-association;0.0117426304050722!GO:0016023;cytoplasmic membrane-bound vesicle;0.0118235683846544!GO:0033367;protein localization in mast cell secretory granule;0.0118235683846544!GO:0033365;protein localization in organelle;0.0118235683846544!GO:0033371;T cell secretory granule organization and biogenesis;0.0118235683846544!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0118235683846544!GO:0033375;protease localization in T cell secretory granule;0.0118235683846544!GO:0042629;mast cell granule;0.0118235683846544!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0118235683846544!GO:0033364;mast cell secretory granule organization and biogenesis;0.0118235683846544!GO:0033380;granzyme B localization in T cell secretory granule;0.0118235683846544!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0118235683846544!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0118235683846544!GO:0033368;protease localization in mast cell secretory granule;0.0118235683846544!GO:0033366;protein localization in secretory granule;0.0118235683846544!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0118235683846544!GO:0033374;protein localization in T cell secretory granule;0.0118235683846544!GO:0032259;methylation;0.0120089701293163!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0123633074066937!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0123633074066937!GO:0009126;purine nucleoside monophosphate metabolic process;0.0123633074066937!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0123633074066937!GO:0043549;regulation of kinase activity;0.0123633074066937!GO:0000152;nuclear ubiquitin ligase complex;0.0123717306130895!GO:0018193;peptidyl-amino acid modification;0.0136967701721153!GO:0008180;signalosome;0.0137465042653036!GO:0008629;induction of apoptosis by intracellular signals;0.0137656430831812!GO:0018196;peptidyl-asparagine modification;0.0138185765770965!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0138185765770965!GO:0030127;COPII vesicle coat;0.0138235431629932!GO:0012507;ER to Golgi transport vesicle membrane;0.0138235431629932!GO:0006220;pyrimidine nucleotide metabolic process;0.0138235431629932!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0139521842767151!GO:0051338;regulation of transferase activity;0.0145657161933279!GO:0022411;cellular component disassembly;0.0146039214165431!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0146302299297352!GO:0051540;metal cluster binding;0.0147753579547777!GO:0051536;iron-sulfur cluster binding;0.0147753579547777!GO:0030433;ER-associated protein catabolic process;0.0148731531488717!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0148731531488717!GO:0000119;mediator complex;0.0149540166818767!GO:0042393;histone binding;0.0150865944784026!GO:0031625;ubiquitin protein ligase binding;0.0152973820458393!GO:0051539;4 iron, 4 sulfur cluster binding;0.0155633131850348!GO:0008276;protein methyltransferase activity;0.0158840212068776!GO:0051053;negative regulation of DNA metabolic process;0.0159705175693306!GO:0043601;nuclear replisome;0.0160844563754265!GO:0030894;replisome;0.0160844563754265!GO:0033116;ER-Golgi intermediate compartment membrane;0.0166579467311!GO:0006984;ER-nuclear signaling pathway;0.0168643537181107!GO:0005669;transcription factor TFIID complex;0.017114439851763!GO:0008320;protein transmembrane transporter activity;0.0171461775370878!GO:0007265;Ras protein signal transduction;0.017313205583067!GO:0008538;proteasome activator activity;0.01734143611343!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0173615579435559!GO:0003756;protein disulfide isomerase activity;0.0174388656244112!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0174388656244112!GO:0032561;guanyl ribonucleotide binding;0.0174388656244112!GO:0019001;guanyl nucleotide binding;0.0174388656244112!GO:0006506;GPI anchor biosynthetic process;0.0174459795086772!GO:0016407;acetyltransferase activity;0.0177461145941658!GO:0043284;biopolymer biosynthetic process;0.0177585196441785!GO:0030522;intracellular receptor-mediated signaling pathway;0.0179135657871253!GO:0009116;nucleoside metabolic process;0.0181625019833295!GO:0007004;telomere maintenance via telomerase;0.0185533173243439!GO:0044262;cellular carbohydrate metabolic process;0.0185904797525352!GO:0019207;kinase regulator activity;0.0186205040591507!GO:0031575;G1/S transition checkpoint;0.0186449456482107!GO:0043414;biopolymer methylation;0.0194788185604929!GO:0044438;microbody part;0.0198642632675813!GO:0044439;peroxisomal part;0.0198642632675813!GO:0006505;GPI anchor metabolic process;0.0198642632675813!GO:0022884;macromolecule transmembrane transporter activity;0.0198862967337967!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0198862967337967!GO:0000178;exosome (RNase complex);0.0205818655054448!GO:0016569;covalent chromatin modification;0.0207155676855712!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0209869099275704!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0209869099275704!GO:0006672;ceramide metabolic process;0.0214158718675087!GO:0005663;DNA replication factor C complex;0.0220614055604049!GO:0030262;apoptotic nuclear changes;0.0221050138605296!GO:0045859;regulation of protein kinase activity;0.0225660688050557!GO:0031577;spindle checkpoint;0.0230048148899809!GO:0006406;mRNA export from nucleus;0.0230329484432323!GO:0008287;protein serine/threonine phosphatase complex;0.0231411123871011!GO:0003887;DNA-directed DNA polymerase activity;0.0231645154325167!GO:0004177;aminopeptidase activity;0.0233395199430622!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0233440037565502!GO:0001836;release of cytochrome c from mitochondria;0.0234699715833121!GO:0044450;microtubule organizing center part;0.0239872693210127!GO:0008097;5S rRNA binding;0.0241002555577027!GO:0051090;regulation of transcription factor activity;0.024125359177944!GO:0007259;JAK-STAT cascade;0.0241495406321505!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0242912621790659!GO:0000792;heterochromatin;0.0242912621790659!GO:0051098;regulation of binding;0.0246095631920341!GO:0003746;translation elongation factor activity;0.0246923956738106!GO:0006497;protein amino acid lipidation;0.0248772066938583!GO:0001891;phagocytic cup;0.0249347925628538!GO:0009303;rRNA transcription;0.0249991772845143!GO:0003702;RNA polymerase II transcription factor activity;0.0250252007880638!GO:0044454;nuclear chromosome part;0.0255826256183658!GO:0007034;vacuolar transport;0.0256280597952385!GO:0007021;tubulin folding;0.0256749722872132!GO:0035267;NuA4 histone acetyltransferase complex;0.025927675086454!GO:0046128;purine ribonucleoside metabolic process;0.025927675086454!GO:0042278;purine nucleoside metabolic process;0.025927675086454!GO:0000738;DNA catabolic process, exonucleolytic;0.0261115026430446!GO:0048468;cell development;0.026496382409056!GO:0004536;deoxyribonuclease activity;0.0269742775602903!GO:0051092;activation of NF-kappaB transcription factor;0.0271866919462306!GO:0016585;chromatin remodeling complex;0.0280137474927696!GO:0031410;cytoplasmic vesicle;0.0281067743430348!GO:0016788;hydrolase activity, acting on ester bonds;0.0289281044789719!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0290321188553259!GO:0012510;trans-Golgi network transport vesicle membrane;0.0290321188553259!GO:0030041;actin filament polymerization;0.029199711185801!GO:0031903;microbody membrane;0.0293691271377818!GO:0005778;peroxisomal membrane;0.0293691271377818!GO:0019904;protein domain specific binding;0.0293927144190647!GO:0009083;branched chain family amino acid catabolic process;0.029535184007327!GO:0004402;histone acetyltransferase activity;0.0296941781375321!GO:0004468;lysine N-acetyltransferase activity;0.0296941781375321!GO:0000096;sulfur amino acid metabolic process;0.0299219972902868!GO:0030176;integral to endoplasmic reticulum membrane;0.0301660849825531!GO:0000123;histone acetyltransferase complex;0.0305263127126933!GO:0045893;positive regulation of transcription, DNA-dependent;0.0305535760397314!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0308137569609749!GO:0006278;RNA-dependent DNA replication;0.0308324392062499!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0309008852616669!GO:0005096;GTPase activator activity;0.0315305991289971!GO:0031252;leading edge;0.0316246597547614!GO:0006519;amino acid and derivative metabolic process;0.0316246597547614!GO:0043631;RNA polyadenylation;0.0316510585660356!GO:0032039;integrator complex;0.0321260523750993!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0322569470287644!GO:0000175;3'-5'-exoribonuclease activity;0.0322569470287644!GO:0005791;rough endoplasmic reticulum;0.0323840230875432!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.032669801351436!GO:0007040;lysosome organization and biogenesis;0.0331561238281597!GO:0009893;positive regulation of metabolic process;0.033429284578352!GO:0043189;H4/H2A histone acetyltransferase complex;0.0338979684206754!GO:0005652;nuclear lamina;0.0338979684206754!GO:0046426;negative regulation of JAK-STAT cascade;0.0339764018606581!GO:0005092;GDP-dissociation inhibitor activity;0.034191694641132!GO:0005784;translocon complex;0.034208108411658!GO:0006118;electron transport;0.0343011496619488!GO:0008537;proteasome activator complex;0.0355290193196903!GO:0051881;regulation of mitochondrial membrane potential;0.035678037329164!GO:0046519;sphingoid metabolic process;0.0358601717268282!GO:0051223;regulation of protein transport;0.035892118806773!GO:0005083;small GTPase regulator activity;0.0362581937342968!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0366184580551272!GO:0051640;organelle localization;0.0367868330692977!GO:0019843;rRNA binding;0.0373795542922691!GO:0044275;cellular carbohydrate catabolic process;0.0375795146264926!GO:0045045;secretory pathway;0.0376828823536016!GO:0031371;ubiquitin conjugating enzyme complex;0.0376828823536016!GO:0032404;mismatch repair complex binding;0.0380797915250067!GO:0006740;NADPH regeneration;0.0388356321978469!GO:0006098;pentose-phosphate shunt;0.0388356321978469!GO:0045936;negative regulation of phosphate metabolic process;0.0389007400927324!GO:0009066;aspartate family amino acid metabolic process;0.0394930261800847!GO:0006301;postreplication repair;0.0399948581628285!GO:0007264;small GTPase mediated signal transduction;0.0403095614012558!GO:0030119;AP-type membrane coat adaptor complex;0.0407954492274768!GO:0043624;cellular protein complex disassembly;0.0411991991277944!GO:0017134;fibroblast growth factor binding;0.0412684181658564!GO:0050178;phenylpyruvate tautomerase activity;0.0412684181658564!GO:0031325;positive regulation of cellular metabolic process;0.0419074309936048!GO:0005675;holo TFIIH complex;0.0419785135663601!GO:0030508;thiol-disulfide exchange intermediate activity;0.0424535010525698!GO:0045069;regulation of viral genome replication;0.0424971229099667!GO:0019079;viral genome replication;0.0425339785746479!GO:0006730;one-carbon compound metabolic process;0.0426570206802555!GO:0006303;double-strand break repair via nonhomologous end joining;0.0435373999779295!GO:0051452;cellular pH reduction;0.0435373999779295!GO:0051453;regulation of cellular pH;0.0435373999779295!GO:0045851;pH reduction;0.0435373999779295!GO:0042113;B cell activation;0.0438101587452633!GO:0008156;negative regulation of DNA replication;0.043988834997837!GO:0000910;cytokinesis;0.0440694776943767!GO:0008610;lipid biosynthetic process;0.0454707158157336!GO:0004214;dipeptidyl-peptidase I activity;0.0460496873928643!GO:0003727;single-stranded RNA binding;0.0460717883670751!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0460717883670751!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0462128701874928!GO:0010257;NADH dehydrogenase complex assembly;0.0462128701874928!GO:0033108;mitochondrial respiratory chain complex assembly;0.0462128701874928!GO:0045947;negative regulation of translational initiation;0.0464305189427708!GO:0030140;trans-Golgi network transport vesicle;0.0465574938717633!GO:0051059;NF-kappaB binding;0.0465997518133161!GO:0032405;MutLalpha complex binding;0.0465997518133161!GO:0046902;regulation of mitochondrial membrane permeability;0.0476358549146221!GO:0007033;vacuole organization and biogenesis;0.0478738324986293!GO:0004659;prenyltransferase activity;0.0480521159576666!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0482229246867992!GO:0045039;protein import into mitochondrial inner membrane;0.0482229246867992!GO:0004563;beta-N-acetylhexosaminidase activity;0.0482883185896014!GO:0004540;ribonuclease activity;0.0482883185896014!GO:0019058;viral infectious cycle;0.0488664355140365!GO:0046979;TAP2 binding;0.0488664355140365!GO:0046977;TAP binding;0.0488664355140365!GO:0046978;TAP1 binding;0.0488664355140365!GO:0015036;disulfide oxidoreductase activity;0.0493836662121561!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0497688011920675!GO:0005680;anaphase-promoting complex;0.0497688011920675!GO:0000793;condensed chromosome;0.0499873485625358!GO:0005869;dynactin complex;0.0499873485625358 | |||
|sample_id=10424 | |sample_id=10424 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 100: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=RORA:1.87155139459;POU5F1:1.85075531254;IRF1,2:1.77695111401;POU2F1..3:1.62967471795;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.47597662173;HOX{A4,D4}:1.39705494517;CDX1,2,4:1.3936343182;NFKB1_REL_RELA:1.38611853907;HOXA9_MEIS1:1.35975411512;E2F1..5:1.35546515361;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.33919605896;AIRE:1.32390983299;PAX6:1.32180659995;DMAP1_NCOR{1,2}_SMARC:1.31499991893;AHR_ARNT_ARNT2:1.28569381247;FOXA2:1.2572983106;MYB:1.25075592404;NKX2-2,8:1.25020016152;YY1:1.22368811676;NFY{A,B,C}:1.22259614264;TOPORS:1.15424242647;EVI1:1.11286277634;NKX6-1,2:1.04056079423;IRF7:1.00421831559;ELF1,2,4:0.975862552422;PITX1..3:0.930742691711;ELK1,4_GABP{A,B1}:0.899534387551;HBP1_HMGB_SSRP1_UBTF:0.879367352517;VSX1,2:0.847110615549;MYOD1:0.757383521225;OCT4_SOX2{dimer}:0.741603607398;POU1F1:0.731769890311;FOXP1:0.728548183822;HIF1A:0.712221439015;CUX2:0.710739218327;ZNF143:0.697754678027;NRF1:0.687925967313;SPI1:0.678971861023;GFI1:0.67668489111;ZBTB16:0.628644575574;CDC5L:0.599554679493;NR5A1,2:0.594019253878;FOXQ1:0.562065752355;RUNX1..3:0.544286737671;ALX1:0.532029559378;SPIB:0.49941765783;bHLH_family:0.449021139462;PBX1:0.371719310294;HSF1,2:0.364640014202;FOX{F1,F2,J1}:0.361758729752;LMO2:0.353826133286;FOXP3:0.33666947221;GATA6:0.320100638993;BPTF:0.30841501609;PAX3,7:0.300143959883;ATF5_CREB3:0.289700647444;TP53:0.286022963944;RBPJ:0.242691150876;TFDP1:0.23877759807;NANOG{mouse}:0.214032716737;PAX8:0.191515642283;FOXN1:0.174188537823;NKX2-1,4:0.173518051602;SREBF1,2:0.170598218789;TEF:0.156330463429;ZNF384:0.0947005290683;HES1:0.0683156130474;PAX2:0.026388098804;RFX2..5_RFXANK_RFXAP:0.0228799328265;ZEB1:0.021423447579;SNAI1..3:0.00179941392495;ETS1,2:0.000402024460678;STAT5{A,B}:-0.0045787588071;TGIF1:-0.0150393712541;BREu{core}:-0.0216084303249;SOX{8,9,10}:-0.0433990989615;IKZF2:-0.0824035647719;PDX1:-0.116721121344;HMGA1,2:-0.120229194034;ESRRA:-0.15204097329;MEF2{A,B,C,D}:-0.16962636036;PAX4:-0.174566315732;FOSL2:-0.174812127642;POU3F1..4:-0.176235586993;HNF4A_NR2F1,2:-0.182336572774;ARID5B:-0.202628050711;SPZ1:-0.204700891922;TLX2:-0.211356345213;HAND1,2:-0.218639034932;PRRX1,2:-0.220489287264;HNF1A:-0.229807492115;SOX5:-0.245687665461;CRX:-0.252972817633;HOX{A5,B5}:-0.255993897162;EN1,2:-0.276325640807;HOX{A6,A7,B6,B7}:-0.281674657864;NFE2:-0.285190644358;ONECUT1,2:-0.285594549665;GATA4:-0.356236932201;RXRA_VDR{dimer}:-0.356554729336;FOXO1,3,4:-0.35777115143;NANOG:-0.376407046922;IKZF1:-0.408274901872;FOS_FOS{B,L1}_JUN{B,D}:-0.418970309386;CREB1:-0.432014276314;ZFP161:-0.469267967706;STAT1,3:-0.502047832013;GFI1B:-0.503023953117;SOX17:-0.508057799779;MYBL2:-0.524107613256;GCM1,2:-0.53283812287;LHX3,4:-0.544692834346;RFX1:-0.545425445337;PRDM1:-0.554549304513;CEBPA,B_DDIT3:-0.574542782979;ATF2:-0.586992865496;ATF4:-0.604958224603;LEF1_TCF7_TCF7L1,2:-0.611465160956;TAL1_TCF{3,4,12}:-0.61559379376;ALX4:-0.618538166802;FOXM1:-0.619744781448;BACH2:-0.655016968914;MYFfamily:-0.676078324599;NKX3-2:-0.677069142799;DBP:-0.678480549916;UFEwm:-0.698669833921;SOX2:-0.700413044906;RREB1:-0.713473656687;NR1H4:-0.738591379158;HLF:-0.745938049364;ADNP_IRX_SIX_ZHX:-0.767707021346;ZIC1..3:-0.775373451042;NHLH1,2:-0.798004191437;AR:-0.816442577357;SMAD1..7,9:-0.818212369741;PPARG:-0.824122411458;EP300:-0.83390118126;NFIL3:-0.854881173727;ZNF148:-0.865903434253;NFATC1..3:-0.893039825448;NKX2-3_NKX2-5:-0.916499037516;NFE2L2:-0.935835018079;FOX{I1,J2}:-0.944588577521;FOXD3:-0.964436666073;SRF:-0.976184089367;FOX{D1,D2}:-0.998633880635;KLF4:-1.00818548078;NFIX:-1.00998106408;GLI1..3:-1.01172671799;ZNF238:-1.03144078578;GZF1:-1.03611261896;MED-1{core}:-1.03822560476;MZF1:-1.047692684;NR6A1:-1.04769391698;HMX1:-1.05063534575;RXR{A,B,G}:-1.05629012615;REST:-1.0587871743;MAFB:-1.0709609013;TBP:-1.07160236168;PAX1,9:-1.07526657485;TBX4,5:-1.08085288703;NR3C1:-1.0845359461;GTF2I:-1.08886673221;POU6F1:-1.09181091181;JUN:-1.1027973207;MTE{core}:-1.12118870938;NFE2L1:-1.15165846347;GTF2A1,2:-1.15552963165;NKX3-1:-1.17786090252;TFAP4:-1.22428220421;EBF1:-1.24174421307;STAT2,4,6:-1.27455415467;ESR1:-1.28132147001;MTF1:-1.33342570408;ZBTB6:-1.34294596216;ATF6:-1.43203898877;XCPE1{core}:-1.47207399395;HIC1:-1.47218227736;MAZ:-1.48042075885;TLX1..3_NFIC{dimer}:-1.48868366134;TEAD1:-1.49183302177;EGR1..3:-1.547860579;PATZ1:-1.56785195456;PAX5:-1.59364900098;TFCP2:-1.70781198814;ZNF423:-1.7416361356;XBP1:-1.80527649019;SP1:-1.85367336127;TFAP2{A,C}:-1.92950666284;TFAP2B:-1.93788323687;FOXL1:-2.08539211116;T:-2.5274837803 | |top_motifs=RORA:1.87155139459;POU5F1:1.85075531254;IRF1,2:1.77695111401;POU2F1..3:1.62967471795;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.47597662173;HOX{A4,D4}:1.39705494517;CDX1,2,4:1.3936343182;NFKB1_REL_RELA:1.38611853907;HOXA9_MEIS1:1.35975411512;E2F1..5:1.35546515361;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.33919605896;AIRE:1.32390983299;PAX6:1.32180659995;DMAP1_NCOR{1,2}_SMARC:1.31499991893;AHR_ARNT_ARNT2:1.28569381247;FOXA2:1.2572983106;MYB:1.25075592404;NKX2-2,8:1.25020016152;YY1:1.22368811676;NFY{A,B,C}:1.22259614264;TOPORS:1.15424242647;EVI1:1.11286277634;NKX6-1,2:1.04056079423;IRF7:1.00421831559;ELF1,2,4:0.975862552422;PITX1..3:0.930742691711;ELK1,4_GABP{A,B1}:0.899534387551;HBP1_HMGB_SSRP1_UBTF:0.879367352517;VSX1,2:0.847110615549;MYOD1:0.757383521225;OCT4_SOX2{dimer}:0.741603607398;POU1F1:0.731769890311;FOXP1:0.728548183822;HIF1A:0.712221439015;CUX2:0.710739218327;ZNF143:0.697754678027;NRF1:0.687925967313;SPI1:0.678971861023;GFI1:0.67668489111;ZBTB16:0.628644575574;CDC5L:0.599554679493;NR5A1,2:0.594019253878;FOXQ1:0.562065752355;RUNX1..3:0.544286737671;ALX1:0.532029559378;SPIB:0.49941765783;bHLH_family:0.449021139462;PBX1:0.371719310294;HSF1,2:0.364640014202;FOX{F1,F2,J1}:0.361758729752;LMO2:0.353826133286;FOXP3:0.33666947221;GATA6:0.320100638993;BPTF:0.30841501609;PAX3,7:0.300143959883;ATF5_CREB3:0.289700647444;TP53:0.286022963944;RBPJ:0.242691150876;TFDP1:0.23877759807;NANOG{mouse}:0.214032716737;PAX8:0.191515642283;FOXN1:0.174188537823;NKX2-1,4:0.173518051602;SREBF1,2:0.170598218789;TEF:0.156330463429;ZNF384:0.0947005290683;HES1:0.0683156130474;PAX2:0.026388098804;RFX2..5_RFXANK_RFXAP:0.0228799328265;ZEB1:0.021423447579;SNAI1..3:0.00179941392495;ETS1,2:0.000402024460678;STAT5{A,B}:-0.0045787588071;TGIF1:-0.0150393712541;BREu{core}:-0.0216084303249;SOX{8,9,10}:-0.0433990989615;IKZF2:-0.0824035647719;PDX1:-0.116721121344;HMGA1,2:-0.120229194034;ESRRA:-0.15204097329;MEF2{A,B,C,D}:-0.16962636036;PAX4:-0.174566315732;FOSL2:-0.174812127642;POU3F1..4:-0.176235586993;HNF4A_NR2F1,2:-0.182336572774;ARID5B:-0.202628050711;SPZ1:-0.204700891922;TLX2:-0.211356345213;HAND1,2:-0.218639034932;PRRX1,2:-0.220489287264;HNF1A:-0.229807492115;SOX5:-0.245687665461;CRX:-0.252972817633;HOX{A5,B5}:-0.255993897162;EN1,2:-0.276325640807;HOX{A6,A7,B6,B7}:-0.281674657864;NFE2:-0.285190644358;ONECUT1,2:-0.285594549665;GATA4:-0.356236932201;RXRA_VDR{dimer}:-0.356554729336;FOXO1,3,4:-0.35777115143;NANOG:-0.376407046922;IKZF1:-0.408274901872;FOS_FOS{B,L1}_JUN{B,D}:-0.418970309386;CREB1:-0.432014276314;ZFP161:-0.469267967706;STAT1,3:-0.502047832013;GFI1B:-0.503023953117;SOX17:-0.508057799779;MYBL2:-0.524107613256;GCM1,2:-0.53283812287;LHX3,4:-0.544692834346;RFX1:-0.545425445337;PRDM1:-0.554549304513;CEBPA,B_DDIT3:-0.574542782979;ATF2:-0.586992865496;ATF4:-0.604958224603;LEF1_TCF7_TCF7L1,2:-0.611465160956;TAL1_TCF{3,4,12}:-0.61559379376;ALX4:-0.618538166802;FOXM1:-0.619744781448;BACH2:-0.655016968914;MYFfamily:-0.676078324599;NKX3-2:-0.677069142799;DBP:-0.678480549916;UFEwm:-0.698669833921;SOX2:-0.700413044906;RREB1:-0.713473656687;NR1H4:-0.738591379158;HLF:-0.745938049364;ADNP_IRX_SIX_ZHX:-0.767707021346;ZIC1..3:-0.775373451042;NHLH1,2:-0.798004191437;AR:-0.816442577357;SMAD1..7,9:-0.818212369741;PPARG:-0.824122411458;EP300:-0.83390118126;NFIL3:-0.854881173727;ZNF148:-0.865903434253;NFATC1..3:-0.893039825448;NKX2-3_NKX2-5:-0.916499037516;NFE2L2:-0.935835018079;FOX{I1,J2}:-0.944588577521;FOXD3:-0.964436666073;SRF:-0.976184089367;FOX{D1,D2}:-0.998633880635;KLF4:-1.00818548078;NFIX:-1.00998106408;GLI1..3:-1.01172671799;ZNF238:-1.03144078578;GZF1:-1.03611261896;MED-1{core}:-1.03822560476;MZF1:-1.047692684;NR6A1:-1.04769391698;HMX1:-1.05063534575;RXR{A,B,G}:-1.05629012615;REST:-1.0587871743;MAFB:-1.0709609013;TBP:-1.07160236168;PAX1,9:-1.07526657485;TBX4,5:-1.08085288703;NR3C1:-1.0845359461;GTF2I:-1.08886673221;POU6F1:-1.09181091181;JUN:-1.1027973207;MTE{core}:-1.12118870938;NFE2L1:-1.15165846347;GTF2A1,2:-1.15552963165;NKX3-1:-1.17786090252;TFAP4:-1.22428220421;EBF1:-1.24174421307;STAT2,4,6:-1.27455415467;ESR1:-1.28132147001;MTF1:-1.33342570408;ZBTB6:-1.34294596216;ATF6:-1.43203898877;XCPE1{core}:-1.47207399395;HIC1:-1.47218227736;MAZ:-1.48042075885;TLX1..3_NFIC{dimer}:-1.48868366134;TEAD1:-1.49183302177;EGR1..3:-1.547860579;PATZ1:-1.56785195456;PAX5:-1.59364900098;TFCP2:-1.70781198814;ZNF423:-1.7416361356;XBP1:-1.80527649019;SP1:-1.85367336127;TFAP2{A,C}:-1.92950666284;TFAP2B:-1.93788323687;FOXL1:-2.08539211116;T:-2.5274837803 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10424-106D1;search_select_hide=table117:FF:10424-106D1 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | splenic lymphoma with villous lymphocytes cell line:SLVL |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10741 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10741
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10741
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.00799 |
| 10 | 10 | 0.0144 |
| 100 | 100 | 0.495 |
| 101 | 101 | 0.195 |
| 102 | 102 | 0.624 |
| 103 | 103 | 0.0876 |
| 104 | 104 | 0.433 |
| 105 | 105 | 0.675 |
| 106 | 106 | 0.957 |
| 107 | 107 | 0.717 |
| 108 | 108 | 0.747 |
| 109 | 109 | 0.0777 |
| 11 | 11 | 0.167 |
| 110 | 110 | 0.114 |
| 111 | 111 | 0.0149 |
| 112 | 112 | 0.104 |
| 113 | 113 | 0.671 |
| 114 | 114 | 0.207 |
| 115 | 115 | 0.623 |
| 116 | 116 | 0.627 |
| 117 | 117 | 0.0188 |
| 118 | 118 | 0.128 |
| 119 | 119 | 0.102 |
| 12 | 12 | 0.852 |
| 120 | 120 | 0.55 |
| 121 | 121 | 0.363 |
| 122 | 122 | 0.371 |
| 123 | 123 | 1.30856e-4 |
| 124 | 124 | 0.0615 |
| 125 | 125 | 0.67 |
| 126 | 126 | 0.117 |
| 127 | 127 | 0.509 |
| 128 | 128 | 0.347 |
| 129 | 129 | 0.39 |
| 13 | 13 | 0.0635 |
| 130 | 130 | 0.995 |
| 131 | 131 | 0.221 |
| 132 | 132 | 0.572 |
| 133 | 133 | 0.587 |
| 134 | 134 | 0.612 |
| 135 | 135 | 0.571 |
| 136 | 136 | 0.281 |
| 137 | 137 | 0.171 |
| 138 | 138 | 0.857 |
| 139 | 139 | 0.218 |
| 14 | 14 | 0.692 |
| 140 | 140 | 0.193 |
| 141 | 141 | 0.0628 |
| 142 | 142 | 0.65 |
| 143 | 143 | 0.304 |
| 144 | 144 | 0.516 |
| 145 | 145 | 0.179 |
| 146 | 146 | 0.426 |
| 147 | 147 | 0.0525 |
| 148 | 148 | 0.115 |
| 149 | 149 | 0.529 |
| 15 | 15 | 0.0523 |
| 150 | 150 | 0.972 |
| 151 | 151 | 0.924 |
| 152 | 152 | 0.0633 |
| 153 | 153 | 0.207 |
| 154 | 154 | 0.905 |
| 155 | 155 | 0.0875 |
| 156 | 156 | 0.959 |
| 157 | 157 | 0.247 |
| 158 | 158 | 0.315 |
| 159 | 159 | 0.337 |
| 16 | 16 | 0.785 |
| 160 | 160 | 0.136 |
| 161 | 161 | 0.00795 |
| 162 | 162 | 0.975 |
| 163 | 163 | 0.761 |
| 164 | 164 | 0.208 |
| 165 | 165 | 0.788 |
| 166 | 166 | 0.265 |
| 167 | 167 | 0.396 |
| 168 | 168 | 0.844 |
| 169 | 169 | 0.722 |
| 17 | 17 | 0.546 |
| 18 | 18 | 0.466 |
| 19 | 19 | 0.949 |
| 2 | 2 | 0.498 |
| 20 | 20 | 0.369 |
| 21 | 21 | 0.161 |
| 22 | 22 | 0.986 |
| 23 | 23 | 0.325 |
| 24 | 24 | 0.174 |
| 25 | 25 | 0.188 |
| 26 | 26 | 0.0839 |
| 27 | 27 | 0.742 |
| 28 | 28 | 0.696 |
| 29 | 29 | 0.0206 |
| 3 | 3 | 0.0885 |
| 30 | 30 | 0.0791 |
| 31 | 31 | 0.765 |
| 32 | 32 | 0.733 |
| 33 | 33 | 0.741 |
| 34 | 34 | 0.632 |
| 35 | 35 | 0.126 |
| 36 | 36 | 0.0175 |
| 37 | 37 | 0.329 |
| 38 | 38 | 0.335 |
| 39 | 39 | 0.547 |
| 4 | 4 | 0.665 |
| 40 | 40 | 0.387 |
| 41 | 41 | 0.653 |
| 42 | 42 | 0.114 |
| 43 | 43 | 0.282 |
| 44 | 44 | 0.167 |
| 45 | 45 | 0.409 |
| 46 | 46 | 0.19 |
| 47 | 47 | 0.0486 |
| 48 | 48 | 0.0903 |
| 49 | 49 | 0.16 |
| 5 | 5 | 0.644 |
| 50 | 50 | 0.952 |
| 51 | 51 | 0.671 |
| 52 | 52 | 0.428 |
| 53 | 53 | 0.35 |
| 54 | 54 | 0.767 |
| 55 | 55 | 0.957 |
| 56 | 56 | 0.75 |
| 57 | 57 | 0.081 |
| 58 | 58 | 0.136 |
| 59 | 59 | 0.662 |
| 6 | 6 | 0.886 |
| 60 | 60 | 0.814 |
| 61 | 61 | 0.0826 |
| 62 | 62 | 0.122 |
| 63 | 63 | 0.548 |
| 64 | 64 | 0.267 |
| 65 | 65 | 0.799 |
| 66 | 66 | 0.1 |
| 67 | 67 | 0.584 |
| 68 | 68 | 0.335 |
| 69 | 69 | 0.794 |
| 7 | 7 | 0.108 |
| 70 | 70 | 0.443 |
| 71 | 71 | 0.0238 |
| 72 | 72 | 0.264 |
| 73 | 73 | 0.96 |
| 74 | 74 | 0.551 |
| 75 | 75 | 0.00566 |
| 76 | 76 | 0.26 |
| 77 | 77 | 0.846 |
| 78 | 78 | 0.319 |
| 79 | 79 | 0.541 |
| 8 | 8 | 0.173 |
| 80 | 80 | 0.376 |
| 81 | 81 | 0.0625 |
| 82 | 82 | 0.867 |
| 83 | 83 | 0.64 |
| 84 | 84 | 0.215 |
| 85 | 85 | 0.877 |
| 86 | 86 | 0.24 |
| 87 | 87 | 0.319 |
| 88 | 88 | 0.794 |
| 89 | 89 | 0.668 |
| 9 | 9 | 0.639 |
| 90 | 90 | 0.0153 |
| 91 | 91 | 0.89 |
| 92 | 92 | 0.838 |
| 93 | 93 | 0.877 |
| 94 | 94 | 0.493 |
| 95 | 95 | 0.0446 |
| 96 | 96 | 0.24 |
| 97 | 97 | 0.271 |
| 98 | 98 | 0.374 |
| 99 | 99 | 0.23 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10741
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100104 lymphoma cell line sample
UBERON:0002106 spleen
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002106 (spleen)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)
