FF:10428-106D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005691 | ||
| | |accession_numbers=CAGE;DRX007826;DRR008698;DRZ000123;DRZ001508;DRZ011473;DRZ012858 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0103209,FF:0101610,FF:0100919 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120,FF:0101610 | |fonse_cell_line=FF:0101120,FF:0101610 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101610 | |fonse_cell_line_closure=FF:0101120,FF:0101610 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10428-106D5 | |id=FF:10428-106D5 | ||
|is_a= | |is_a=EFO:0002091;;FF:0000210;;FF:0100919 | ||
|is_obsolete= | |||
|library_id=CNhs10745 | |||
|library_id_phase_based=2:CNhs10745 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10428 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10428 | |||
|name=anaplastic carcinoma cell line:8305C | |name=anaplastic carcinoma cell line:8305C | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10745,LSID692,release008,COMPLETED | |profile_hcage=CNhs10745,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0.01124740136886,0,0,0,0.11625167715739,0,-0.231527415948337,-0.23875827265597,0,0,0,0,0,0,0,0,0,0,0,0.0458347162451775,0,-0.10748829410325,0,0,0.0960806346110265,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.508687800383399,0,-0.0193148327703294,0,0,0,0,0,0,0,0,0.100916753965003,0,0,0,0.222157569995506,0,0.0329344857109631,0.0458347162451775,-0.0511576449974276,0,0,0.0948176420089556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0458347162451775,0,0,0,0.0458347162451775,0.0229173581225888,0,0,0,0,0,-0.0268638347021579,0.111078784997753,0,0,0.0311602988973061,0.0660638556184195,0,0.0458347162451775,0.0625658875389185,0.087290575841943,0.0619030652560368,-0.115559842678307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.073456235799872,0,0,0,-0.0740821275952521,-0.115361901612143,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0.00546742177934711,0,0.0458347162451775,0,0.0619030652560368,0,0.087290575841943,0.0458347162451775,0.125131775077837,0,0.222157569995506,0,0,0.0458347162451775,0,0,0.00303635896523255,0.0960806346110265,0.00354961466833725,-0.0183833674456347,0,0,0.0731968873629814,0,0.426451167660432,0,0.033568235912503,0.0458347162451775,0,0,0,0,0.498010226937851,0,-0.0504125515893149,0.087290575841943,0,0.0458347162451775,0,0.0250200068371208,-0.305472230898407,0,0.094575409247508,0.091594155416375,0,0,0,0,0.154695247247207,0,0.101278086201765,0.0424116067544199,0.232794749604776,-0.149439902398585,0.084254051335698,0,0,0,0.424631546939578,0.161638103086449,0,0,-0.121779851751874,0.11870860780079,0,0,-0.345209865306457,0,-0.211548000851472,-0.103876320369702,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0345761086988479,0.299141497211447,0,0.087290575841943,0.250215234250797,0,0.120261347737199,0,0.067440764700641,-0.0967164487127912,0.0317840103531268,0.0888258644326436,0.0667377668800371,0,0.124061440650519,0.0405320142436637,-0.400807941496542,0.146106382769408,0.0125365671226046,0.333437317368418,0.087290575841943,-0.213347626007439,0.0730630970163747,-0.04730056722831,-0.0268638347021579,-0.087015946054404,0.448572940889024,-0.217133515165996,0,0,0,0.144613143450057,0,0,0.437136701117605,-0.0687355453789945,0.0273856492905624,-0.0354639239468826,-0.0533076332523085,-0.192395374930482,0.302729916915641,-0.0890185628259638,0.0673121272715136,0.725245212953464,0.165265720152194,0,0,0.0498625531708261,-0.0674327736986767,-0.268614115524225,0,0.0674847615657492,-0.0683442610773682,0.0854832456615073,0.164547197611722,0.0612607495584245,0.347212057654454,0,0.157806352334458,0,0,0,0,0.192161269222053,-0.0148627858294514,0.393437591382055,0.0173596726952522,0,0.0409115726206389,0,0.083913429074789,0,-0.174331488809743,0,-0.0759165823657864,0.245033136197799,0,-0.115469343871407,0.194866167185909,0.343697104044396,0.0862929949916614,-0.0584468268118252,0.0402021294422351,-0.264189145262887,0.415298920139811,-0.211135941745626,0,-0.0881268324752877,0,0.259838880371967,0.631811110173443,0,0.143137103680298,0,0.0167500943594758,0,-0.166819872010771,0,-0.0627026080243446,-0.151797445545727,0.306070965924869,-0.209654236441676,0,0.00116985119173918,-0.628192521280231,0,0,0.0434752354079777,0,0.174550305177876,0.378152089844811,0.342340856245895,0.258438178724905,0,0.243149168278427,0,0,-0.119521995456938,0.132941852306242,0,-0.00216057401452891,-0.085783877295131,-0.0955282408118957,0.0761901957871185,0.0458347162451775,0.0458347162451775,-0.0942381146159949,0,0,0.0936593618347187,0.156475194484039,-0.111095523575235,-0.166035765644813,0,-0.108622809454255,0,0,0.123888220872812,0,0.132341890747481,0,0.0458347162451775,0.290922350721882,0.132443102106686,0,0,0,0.0268300626859551,0.0458347162451775,0,0,0,0,0,0,0.0422814626680379,-0.354833330216448,0,0,0,0,0,0,0.159938416493743,0,0,0.564832758801957,0.41179792828154,0.15700962580625,0.245400474394211,0.0799692082468715,0,0.0229173581225888,0.00394349460354643,-0.128432826711532,0.834447836036173,0.159938416493743,0.0602985627244208,0,0,0,0,0.0737974267045318,0,0.087290575841943,0.138284853621888,0.0665626460435602,-0.0118957408084865,-0.174281113813061,0,0,0,-0.231119685356613,0,0,0,0,0.0516469360932066,0,0,-0.123242373002981,0,0.198174225977726,0.140575690448665,0,0.26628457290821,0.197450444697792,0.557099751752322,0,0,-0.261347131789888,0,0.0229173581225888,-0.150666671667712,0,0,0,0,0,0,0,0.087290575841943,0,0.212136655260677,0.0458347162451775,0,0.0355232064987347,0,0.159938416493743,0.0458347162451775,0.087290575841943,0.0458347162451775,0,0,0.0458347162451775,-0.0893903633510662,0.0329077184193268,0.222157569995506,0,0.0458347162451775,0,0,0,0,-0.0241060230789031,-0.145095232503828,0,0,0.0458347162451775,0,0,0,0,0,-0.194856232419466,0,0,0,0.0307013741251498,0,-0.0511576449974276,0,0.0458347162451775,0,0,-0.477516545311941,0,0,-0.231527415948337,0,0,0,0,0,0,0,0.0229173581225888,0,0,0,0,0,0.201598302477068,-0.291327114067466,0,0.0458347162451775,0,0,0,0,0,-0.187542722364148,0,0,0,0,0.01124740136886,0,0,0,0.220121003723359,0,0.11625167715739,0,0.0458347162451775,0,0,0,0.087290575841943,0.203977591750423,0.0229173581225888,0,0,0,0,0,0,0,0,0,0,0,0,0,0.395691830297022,0,0.0318648293047857,0.0340041421171405,0,0,0.206839643755234,0,0,0,0,0,0,0.0312254635103916,0.0458347162451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0229173581225888,0,0,0,0,0,0,0,0,0.111078784997753,0.0087872441158831,0,0,0,0,0.388636305927514,0,0,-0.0979578962680575,0.125131775077837,0,0.241141728440947,0,0,0,0.0237446768347695,0.12357965770427,0,0.164300208585525,-0.0792428080727239,0.0677734337919972,0,0,0,0.0881495233033351,0.222157569995506,0,0.0364746448416136,0.0458347162451775,0.125383881803151,0,0,0,0,0,0,0,0,0.087290575841943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.10748829410325,0,0,0,0,0,0,0,0,0,0,0,0,0.0436452879209715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0458347162451775,0,0,0,0,0,0,0.07219981218447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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=19.9385 | |rna_weight_ug=19.9385 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1909 | |sample_cell_catalog=RCB1909 | ||
|sample_cell_line=8305C | |sample_cell_line=8305C | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.1118781386556e-219!GO:0043231;intracellular membrane-bound organelle;1.18931716210051e-173!GO:0043226;organelle;1.32210411155731e-173!GO:0043227;membrane-bound organelle;1.32210411155731e-173!GO:0043229;intracellular organelle;3.5487065767179e-173!GO:0005737;cytoplasm;1.51988582664306e-169!GO:0044444;cytoplasmic part;3.29473804923358e-114!GO:0044422;organelle part;1.04648232793683e-110!GO:0044446;intracellular organelle part;3.1278196160851e-109!GO:0044238;primary metabolic process;4.01992257553663e-87!GO:0044237;cellular metabolic process;4.97067906125322e-87!GO:0043170;macromolecule metabolic process;5.13121057875708e-84!GO:0005515;protein binding;5.82860948691282e-80!GO:0032991;macromolecular complex;1.32658624835848e-76!GO:0030529;ribonucleoprotein complex;4.77414304409965e-75!GO:0005634;nucleus;7.85929864657238e-73!GO:0003723;RNA binding;1.08179715476442e-66!GO:0043233;organelle lumen;7.68776731030566e-66!GO:0031974;membrane-enclosed lumen;7.68776731030566e-66!GO:0044428;nuclear part;1.29507606462453e-65!GO:0005739;mitochondrion;7.92530430901752e-56!GO:0019538;protein metabolic process;2.97874505121519e-51!GO:0043283;biopolymer metabolic process;6.4416551178607e-51!GO:0033036;macromolecule localization;1.35346818387171e-47!GO:0015031;protein transport;1.39347384247265e-47!GO:0010467;gene expression;1.95576882226528e-47!GO:0016043;cellular component organization and biogenesis;3.90650233829103e-47!GO:0006412;translation;1.82679304253214e-46!GO:0044260;cellular macromolecule metabolic process;2.82635763329076e-46!GO:0044267;cellular protein metabolic process;4.05909148783338e-46!GO:0005840;ribosome;1.52676324271752e-44!GO:0045184;establishment of protein localization;4.69950483231529e-44!GO:0008104;protein localization;9.49746690506848e-44!GO:0006396;RNA processing;5.13580537804277e-43!GO:0031090;organelle membrane;1.77127902091268e-42!GO:0031981;nuclear lumen;1.83179576639555e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.74712424534986e-40!GO:0003735;structural constituent of ribosome;9.11161307267924e-38!GO:0046907;intracellular transport;9.76563708713721e-38!GO:0009059;macromolecule biosynthetic process;6.20784854828332e-37!GO:0009058;biosynthetic process;1.82701181096489e-36!GO:0043234;protein complex;8.40873854431081e-36!GO:0016071;mRNA metabolic process;8.40873854431081e-36!GO:0044249;cellular biosynthetic process;9.5736838954609e-35!GO:0044429;mitochondrial part;1.05672789428285e-33!GO:0008380;RNA splicing;1.24939620445692e-33!GO:0005829;cytosol;1.74941064584316e-33!GO:0033279;ribosomal subunit;4.59999876834802e-33!GO:0006886;intracellular protein transport;3.47770381217297e-32!GO:0006397;mRNA processing;7.13639662494583e-31!GO:0031967;organelle envelope;2.51287255178479e-30!GO:0031975;envelope;3.98222082476038e-30!GO:0065003;macromolecular complex assembly;3.84336891634363e-27!GO:0005654;nucleoplasm;2.21942402792372e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.59649645456601e-25!GO:0003676;nucleic acid binding;1.78167553786485e-25!GO:0005681;spliceosome;3.587775821218e-25!GO:0051641;cellular localization;1.25292715091319e-24!GO:0051649;establishment of cellular localization;2.63324633649339e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.00069249314238e-24!GO:0022607;cellular component assembly;1.55239361098978e-23!GO:0016070;RNA metabolic process;1.58838492429029e-23!GO:0043228;non-membrane-bound organelle;3.21120105390487e-22!GO:0043232;intracellular non-membrane-bound organelle;3.21120105390487e-22!GO:0006996;organelle organization and biogenesis;3.44028415166094e-22!GO:0000166;nucleotide binding;1.55527576554416e-21!GO:0044451;nucleoplasm part;2.40266296452842e-21!GO:0019866;organelle inner membrane;1.85775864733378e-20!GO:0005740;mitochondrial envelope;3.41633910107591e-20!GO:0044445;cytosolic part;4.86342999421578e-20!GO:0008134;transcription factor binding;6.78795360405803e-20!GO:0006457;protein folding;8.0034235235992e-20!GO:0031966;mitochondrial membrane;9.63233995905703e-20!GO:0012505;endomembrane system;3.2580498121605e-19!GO:0005743;mitochondrial inner membrane;6.21025180106658e-19!GO:0016874;ligase activity;6.21567217227818e-19!GO:0006119;oxidative phosphorylation;1.19577552216236e-18!GO:0006512;ubiquitin cycle;1.19860858307918e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.28943053516509e-18!GO:0016462;pyrophosphatase activity;1.3842176706215e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.96781164737792e-18!GO:0017111;nucleoside-triphosphatase activity;6.94233271878495e-18!GO:0005794;Golgi apparatus;1.19816078420922e-17!GO:0022618;protein-RNA complex assembly;2.42591660215454e-17!GO:0006259;DNA metabolic process;2.51920907600087e-17!GO:0015934;large ribosomal subunit;3.69760280533642e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.91938302300198e-17!GO:0048770;pigment granule;1.13557985273595e-16!GO:0042470;melanosome;1.13557985273595e-16!GO:0019941;modification-dependent protein catabolic process;1.25328182818951e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.25328182818951e-16!GO:0015935;small ribosomal subunit;1.25328182818951e-16!GO:0006605;protein targeting;1.5005329024157e-16!GO:0043412;biopolymer modification;2.37580944230577e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.08276972926357e-16!GO:0044257;cellular protein catabolic process;3.48438864681118e-16!GO:0031980;mitochondrial lumen;5.54606872478018e-16!GO:0005759;mitochondrial matrix;5.54606872478018e-16!GO:0008135;translation factor activity, nucleic acid binding;1.10264591720743e-15!GO:0043285;biopolymer catabolic process;1.14671627427636e-15!GO:0005730;nucleolus;1.18735177049573e-15!GO:0005783;endoplasmic reticulum;1.28026871667649e-15!GO:0044265;cellular macromolecule catabolic process;1.35491941461027e-15!GO:0032553;ribonucleotide binding;1.64585406425779e-15!GO:0032555;purine ribonucleotide binding;1.64585406425779e-15!GO:0048193;Golgi vesicle transport;3.73243503342209e-15!GO:0050794;regulation of cellular process;3.97408746746881e-15!GO:0017076;purine nucleotide binding;4.9293125271416e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.88499280335567e-15!GO:0044455;mitochondrial membrane part;6.38680793729895e-15!GO:0016192;vesicle-mediated transport;9.47249858441145e-15!GO:0051082;unfolded protein binding;1.1170638311884e-14!GO:0006464;protein modification process;1.27456392224382e-14!GO:0030163;protein catabolic process;1.27456392224382e-14!GO:0051186;cofactor metabolic process;6.83869168267221e-14!GO:0009057;macromolecule catabolic process;1.16051753374438e-13!GO:0012501;programmed cell death;1.16051753374438e-13!GO:0006915;apoptosis;3.59926026577537e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.62887372611918e-13!GO:0006366;transcription from RNA polymerase II promoter;8.85096198253872e-13!GO:0044432;endoplasmic reticulum part;1.0033505024941e-12!GO:0005746;mitochondrial respiratory chain;1.16886400154398e-12!GO:0044248;cellular catabolic process;1.37061684930051e-12!GO:0007049;cell cycle;1.47189745326193e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.87131600167246e-12!GO:0003743;translation initiation factor activity;2.74589327585049e-12!GO:0008219;cell death;2.74589327585049e-12!GO:0016265;death;2.74589327585049e-12!GO:0048523;negative regulation of cellular process;2.74589327585049e-12!GO:0006913;nucleocytoplasmic transport;2.77189846654476e-12!GO:0005761;mitochondrial ribosome;2.80917068531474e-12!GO:0000313;organellar ribosome;2.80917068531474e-12!GO:0043687;post-translational protein modification;2.80917068531474e-12!GO:0050136;NADH dehydrogenase (quinone) activity;4.88240145205391e-12!GO:0003954;NADH dehydrogenase activity;4.88240145205391e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.88240145205391e-12!GO:0003712;transcription cofactor activity;5.82561198001235e-12!GO:0051169;nuclear transport;6.83791455829085e-12!GO:0016604;nuclear body;7.11614308857459e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.00057484644405e-11!GO:0006732;coenzyme metabolic process;1.44700783024637e-11!GO:0005524;ATP binding;1.97992945912659e-11!GO:0032559;adenyl ribonucleotide binding;3.08852654831625e-11!GO:0006413;translational initiation;3.47393160468165e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.05628879219862e-11!GO:0000375;RNA splicing, via transesterification reactions;4.05628879219862e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.05628879219862e-11!GO:0005793;ER-Golgi intermediate compartment;4.23487799524849e-11!GO:0005635;nuclear envelope;4.90605612845151e-11!GO:0050789;regulation of biological process;7.5791541281896e-11!GO:0030554;adenyl nucleotide binding;1.02205733761763e-10!GO:0048519;negative regulation of biological process;1.24452164230924e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.05663932848714e-10!GO:0006446;regulation of translational initiation;2.88434386106623e-10!GO:0031965;nuclear membrane;2.97625973149948e-10!GO:0008639;small protein conjugating enzyme activity;3.21101678153287e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.32665580711101e-10!GO:0045271;respiratory chain complex I;3.32665580711101e-10!GO:0005747;mitochondrial respiratory chain complex I;3.32665580711101e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.65102725937526e-10!GO:0042773;ATP synthesis coupled electron transport;3.65102725937526e-10!GO:0006974;response to DNA damage stimulus;6.19626486781737e-10!GO:0004842;ubiquitin-protein ligase activity;6.56737252049718e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.6250732916098e-10!GO:0016607;nuclear speck;9.75569934834656e-10!GO:0019787;small conjugating protein ligase activity;9.88229749136223e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.20754002451379e-09!GO:0003924;GTPase activity;1.23919332421625e-09!GO:0017038;protein import;1.28803976119901e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.49317917166546e-09!GO:0042254;ribosome biogenesis and assembly;3.40701620518239e-09!GO:0006399;tRNA metabolic process;5.31447915783241e-09!GO:0009055;electron carrier activity;5.35948120727602e-09!GO:0022402;cell cycle process;6.15827705771494e-09!GO:0005789;endoplasmic reticulum membrane;6.6723621241799e-09!GO:0051726;regulation of cell cycle;6.71525512730239e-09!GO:0005768;endosome;6.77115780641553e-09!GO:0009259;ribonucleotide metabolic process;9.29545039740872e-09!GO:0000074;regulation of progression through cell cycle;1.09274094154569e-08!GO:0016881;acid-amino acid ligase activity;1.38455189140016e-08!GO:0004386;helicase activity;1.38455189140016e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.39901702794654e-08!GO:0016564;transcription repressor activity;1.7067080460636e-08!GO:0006163;purine nucleotide metabolic process;1.78890915674616e-08!GO:0043067;regulation of programmed cell death;1.80589926555806e-08!GO:0006164;purine nucleotide biosynthetic process;1.99368501007189e-08!GO:0042981;regulation of apoptosis;2.12410466128505e-08!GO:0048522;positive regulation of cellular process;2.3274794403812e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.4149646978255e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.4149646978255e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.4149646978255e-08!GO:0044453;nuclear membrane part;2.42366276650223e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.61998903033448e-08!GO:0006461;protein complex assembly;2.66242875166615e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.20763260659871e-08!GO:0019222;regulation of metabolic process;3.47548103739691e-08!GO:0031324;negative regulation of cellular metabolic process;3.48300747368358e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.05978734354735e-08!GO:0043038;amino acid activation;4.05978734354735e-08!GO:0006418;tRNA aminoacylation for protein translation;4.05978734354735e-08!GO:0043039;tRNA aminoacylation;4.05978734354735e-08!GO:0051246;regulation of protein metabolic process;4.18377653059501e-08!GO:0009150;purine ribonucleotide metabolic process;4.19088722537546e-08!GO:0051188;cofactor biosynthetic process;4.2683006316653e-08!GO:0009260;ribonucleotide biosynthetic process;4.39761700304401e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.44228838688632e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.63287749345518e-08!GO:0044431;Golgi apparatus part;5.83943511965639e-08!GO:0006281;DNA repair;7.76488490048264e-08!GO:0015986;ATP synthesis coupled proton transport;8.0275421444825e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.0275421444825e-08!GO:0009060;aerobic respiration;8.92802117469107e-08!GO:0016887;ATPase activity;1.0538952511717e-07!GO:0009056;catabolic process;1.20619530060487e-07!GO:0008565;protein transporter activity;1.44878191625045e-07!GO:0051170;nuclear import;1.63270715831675e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.6517903511106e-07!GO:0043069;negative regulation of programmed cell death;1.73183210170212e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.73183210170212e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.25737262969431e-07!GO:0006916;anti-apoptosis;2.4584562561554e-07!GO:0005525;GTP binding;2.63173291356273e-07!GO:0006606;protein import into nucleus;2.88154410799246e-07!GO:0005667;transcription factor complex;3.0463048347725e-07!GO:0008026;ATP-dependent helicase activity;3.07775699060755e-07!GO:0030120;vesicle coat;3.4488009662836e-07!GO:0030662;coated vesicle membrane;3.4488009662836e-07!GO:0043066;negative regulation of apoptosis;3.55050511434802e-07!GO:0003714;transcription corepressor activity;4.11018475856659e-07!GO:0006403;RNA localization;4.11018475856659e-07!GO:0065007;biological regulation;4.20210805107849e-07!GO:0006323;DNA packaging;4.37345886773761e-07!GO:0042623;ATPase activity, coupled;4.97321675828977e-07!GO:0009108;coenzyme biosynthetic process;5.03962088326733e-07!GO:0045333;cellular respiration;5.06164335909698e-07!GO:0050657;nucleic acid transport;5.06164335909698e-07!GO:0051236;establishment of RNA localization;5.06164335909698e-07!GO:0050658;RNA transport;5.06164335909698e-07!GO:0009719;response to endogenous stimulus;5.87329121441149e-07!GO:0051276;chromosome organization and biogenesis;6.3630017490849e-07!GO:0019829;cation-transporting ATPase activity;6.5388339463248e-07!GO:0009892;negative regulation of metabolic process;6.78069830060352e-07!GO:0031252;leading edge;6.92716209122877e-07!GO:0009141;nucleoside triphosphate metabolic process;7.51391681663575e-07!GO:0045786;negative regulation of progression through cell cycle;7.51391681663575e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.62238745091244e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.66652578839796e-07!GO:0005643;nuclear pore;7.77934472688502e-07!GO:0048475;coated membrane;8.53328388308708e-07!GO:0030117;membrane coat;8.53328388308708e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.0331763625418e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.0331763625418e-06!GO:0016481;negative regulation of transcription;1.14341553984051e-06!GO:0019899;enzyme binding;1.15149685141619e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.20822533962111e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.20822533962111e-06!GO:0006793;phosphorus metabolic process;1.20822533962111e-06!GO:0006796;phosphate metabolic process;1.20822533962111e-06!GO:0046034;ATP metabolic process;1.21691462756088e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.2478285971834e-06!GO:0043566;structure-specific DNA binding;1.31030999530497e-06!GO:0006754;ATP biosynthetic process;1.37698513935441e-06!GO:0006753;nucleoside phosphate metabolic process;1.37698513935441e-06!GO:0032561;guanyl ribonucleotide binding;1.48006794669687e-06!GO:0019001;guanyl nucleotide binding;1.48006794669687e-06!GO:0007243;protein kinase cascade;1.52491092831194e-06!GO:0016563;transcription activator activity;1.55055133713469e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.60722919804875e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.60722919804875e-06!GO:0007005;mitochondrion organization and biogenesis;1.8199588601365e-06!GO:0065002;intracellular protein transport across a membrane;1.88435606150335e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.94208345323916e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.5966365579936e-06!GO:0016568;chromatin modification;3.11965895701104e-06!GO:0032446;protein modification by small protein conjugation;3.62695731687937e-06!GO:0006099;tricarboxylic acid cycle;3.79668897282449e-06!GO:0046356;acetyl-CoA catabolic process;3.79668897282449e-06!GO:0005770;late endosome;4.04255062396713e-06!GO:0044440;endosomal part;4.35357504273412e-06!GO:0010008;endosome membrane;4.35357504273412e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.92438742360561e-06!GO:0016567;protein ubiquitination;5.01686596117039e-06!GO:0000278;mitotic cell cycle;5.10585970258118e-06!GO:0000139;Golgi membrane;5.43374976322322e-06!GO:0016310;phosphorylation;5.79535432627797e-06!GO:0003713;transcription coactivator activity;6.85041914592383e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.28835476667731e-06!GO:0031323;regulation of cellular metabolic process;7.3158730301031e-06!GO:0016787;hydrolase activity;7.765237181627e-06!GO:0006084;acetyl-CoA metabolic process;8.73021943594124e-06!GO:0004298;threonine endopeptidase activity;9.18384177004293e-06!GO:0006613;cotranslational protein targeting to membrane;9.19419997623194e-06!GO:0031988;membrane-bound vesicle;9.31154533840218e-06!GO:0009117;nucleotide metabolic process;1.0871227057471e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.19197767636992e-05!GO:0005788;endoplasmic reticulum lumen;1.28089452453187e-05!GO:0000151;ubiquitin ligase complex;1.33043942488797e-05!GO:0006364;rRNA processing;1.37888730635444e-05!GO:0065004;protein-DNA complex assembly;1.40664908839182e-05!GO:0046930;pore complex;1.4854147926044e-05!GO:0009109;coenzyme catabolic process;1.63577194934283e-05!GO:0016072;rRNA metabolic process;1.6788255981986e-05!GO:0000245;spliceosome assembly;1.76917862808911e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.79305925106351e-05!GO:0051028;mRNA transport;1.84976569445232e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.85255738110905e-05!GO:0051187;cofactor catabolic process;2.00321882588152e-05!GO:0048518;positive regulation of biological process;2.05692787378997e-05!GO:0005798;Golgi-associated vesicle;2.06703048376665e-05!GO:0016740;transferase activity;2.14173941151045e-05!GO:0045259;proton-transporting ATP synthase complex;2.16555040678517e-05!GO:0006350;transcription;2.17201523261254e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.3770693213411e-05!GO:0005694;chromosome;2.39817249500254e-05!GO:0003697;single-stranded DNA binding;2.48152497290655e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.67761665234833e-05!GO:0005769;early endosome;2.77388096027524e-05!GO:0045893;positive regulation of transcription, DNA-dependent;2.83167774182209e-05!GO:0006752;group transfer coenzyme metabolic process;2.92681431288261e-05!GO:0031982;vesicle;3.47087800002968e-05!GO:0005773;vacuole;3.69838772063775e-05!GO:0016779;nucleotidyltransferase activity;4.20570786384375e-05!GO:0007264;small GTPase mediated signal transduction;4.45552509542306e-05!GO:0031410;cytoplasmic vesicle;4.92891070032669e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.03743167594256e-05!GO:0065009;regulation of a molecular function;5.69775774663329e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.38318243487169e-05!GO:0006260;DNA replication;7.02795068164062e-05!GO:0010468;regulation of gene expression;8.23475888605624e-05!GO:0045941;positive regulation of transcription;0.000100247378972257!GO:0006333;chromatin assembly or disassembly;0.000118801675056549!GO:0043623;cellular protein complex assembly;0.000118801675056549!GO:0000785;chromatin;0.000129264382864181!GO:0044427;chromosomal part;0.000129946331113833!GO:0003690;double-stranded DNA binding;0.000130675122584609!GO:0045892;negative regulation of transcription, DNA-dependent;0.000131347569086627!GO:0051427;hormone receptor binding;0.000132135800977175!GO:0008361;regulation of cell size;0.000137907015148566!GO:0043021;ribonucleoprotein binding;0.000139916491044344!GO:0009967;positive regulation of signal transduction;0.000145201868769322!GO:0051789;response to protein stimulus;0.000148722522967782!GO:0006986;response to unfolded protein;0.000148722522967782!GO:0005762;mitochondrial large ribosomal subunit;0.000150361841374619!GO:0000315;organellar large ribosomal subunit;0.000150361841374619!GO:0016197;endosome transport;0.000182062977820977!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000191539075249351!GO:0006612;protein targeting to membrane;0.000206956101923269!GO:0000323;lytic vacuole;0.000225645064958181!GO:0005764;lysosome;0.000225645064958181!GO:0016859;cis-trans isomerase activity;0.000227746896154573!GO:0030029;actin filament-based process;0.000230265849944883!GO:0035257;nuclear hormone receptor binding;0.000244494701280483!GO:0030867;rough endoplasmic reticulum membrane;0.000266033752251839!GO:0003724;RNA helicase activity;0.000267810373481772!GO:0033116;ER-Golgi intermediate compartment membrane;0.000269004513209152!GO:0005048;signal sequence binding;0.000273092648411164!GO:0006891;intra-Golgi vesicle-mediated transport;0.000319213169323212!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00031973110453272!GO:0016049;cell growth;0.00031973110453272!GO:0000314;organellar small ribosomal subunit;0.00031973110453272!GO:0005763;mitochondrial small ribosomal subunit;0.00031973110453272!GO:0008092;cytoskeletal protein binding;0.000340798498707699!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000409868891752207!GO:0001558;regulation of cell growth;0.000425441896654518!GO:0016853;isomerase activity;0.000425977278832444!GO:0048471;perinuclear region of cytoplasm;0.000433404239631909!GO:0007050;cell cycle arrest;0.000441343126280845!GO:0015980;energy derivation by oxidation of organic compounds;0.000453360721403214!GO:0016044;membrane organization and biogenesis;0.000511058772935221!GO:0016363;nuclear matrix;0.000518558048406039!GO:0005813;centrosome;0.000527745929620688!GO:0045454;cell redox homeostasis;0.000534606040577022!GO:0003729;mRNA binding;0.000625763908681176!GO:0032774;RNA biosynthetic process;0.00063526991802914!GO:0008047;enzyme activator activity;0.000674089708972706!GO:0030133;transport vesicle;0.000684685561665354!GO:0006351;transcription, DNA-dependent;0.000719852687932965!GO:0008250;oligosaccharyl transferase complex;0.000758083671533976!GO:0051168;nuclear export;0.000784954232062681!GO:0009165;nucleotide biosynthetic process;0.000822947435193618!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000825005329920844!GO:0005905;coated pit;0.000848077025376478!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00086180246818864!GO:0048468;cell development;0.000941005542751132!GO:0004860;protein kinase inhibitor activity;0.000964291269218453!GO:0004576;oligosaccharyl transferase activity;0.000965628398481265!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000971396990486043!GO:0008654;phospholipid biosynthetic process;0.000980236240357491!GO:0001726;ruffle;0.000987977729807216!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0010249274575316!GO:0015630;microtubule cytoskeleton;0.00103831311598028!GO:0003899;DNA-directed RNA polymerase activity;0.00109555574875088!GO:0005815;microtubule organizing center;0.00126087460213693!GO:0030663;COPI coated vesicle membrane;0.00126352200716189!GO:0030126;COPI vesicle coat;0.00126352200716189!GO:0004177;aminopeptidase activity;0.00128628493848419!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00136372274078692!GO:0009966;regulation of signal transduction;0.00145491370924564!GO:0006402;mRNA catabolic process;0.00150318686982691!GO:0005885;Arp2/3 protein complex;0.00165577043005509!GO:0006383;transcription from RNA polymerase III promoter;0.00168139775503787!GO:0005096;GTPase activator activity;0.00168968690431949!GO:0019843;rRNA binding;0.001864022022358!GO:0018196;peptidyl-asparagine modification;0.00191205856754471!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00191205856754471!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00196127109131844!GO:0006839;mitochondrial transport;0.00196713438521!GO:0031968;organelle outer membrane;0.0020271812603916!GO:0048500;signal recognition particle;0.00205697885944791!GO:0000049;tRNA binding;0.00205697885944791!GO:0045449;regulation of transcription;0.00209509155592468!GO:0051920;peroxiredoxin activity;0.00212443180848683!GO:0007242;intracellular signaling cascade;0.00215550878508184!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00219559160209201!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00219559160209201!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00219559160209201!GO:0019867;outer membrane;0.00226212665908253!GO:0030137;COPI-coated vesicle;0.00240392956963178!GO:0045792;negative regulation of cell size;0.00243694623946318!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0025249035987453!GO:0043681;protein import into mitochondrion;0.00262322616631983!GO:0006892;post-Golgi vesicle-mediated transport;0.00273819731849574!GO:0016491;oxidoreductase activity;0.00273853072941379!GO:0031072;heat shock protein binding;0.00275495253511645!GO:0030134;ER to Golgi transport vesicle;0.00276885601664045!GO:0008186;RNA-dependent ATPase activity;0.00298488772240851!GO:0035258;steroid hormone receptor binding;0.00301915240454099!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0030223189396097!GO:0045045;secretory pathway;0.00315204991208134!GO:0006626;protein targeting to mitochondrion;0.00326676932134217!GO:0006091;generation of precursor metabolites and energy;0.00336647956824661!GO:0022403;cell cycle phase;0.0034712171673537!GO:0051252;regulation of RNA metabolic process;0.0034712171673537!GO:0043488;regulation of mRNA stability;0.00347604397160633!GO:0043487;regulation of RNA stability;0.00347604397160633!GO:0000087;M phase of mitotic cell cycle;0.00349588826244901!GO:0008312;7S RNA binding;0.00372367716822423!GO:0030308;negative regulation of cell growth;0.00373607904512132!GO:0006352;transcription initiation;0.00378967644186905!GO:0051540;metal cluster binding;0.00385711177816265!GO:0051536;iron-sulfur cluster binding;0.00385711177816265!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00411499561552296!GO:0045047;protein targeting to ER;0.00411499561552296!GO:0046489;phosphoinositide biosynthetic process;0.00427794190433324!GO:0005741;mitochondrial outer membrane;0.00428831117315518!GO:0050790;regulation of catalytic activity;0.00428981060702354!GO:0044262;cellular carbohydrate metabolic process;0.00428981060702354!GO:0006414;translational elongation;0.00437397960228706!GO:0030127;COPII vesicle coat;0.00460068280978841!GO:0012507;ER to Golgi transport vesicle membrane;0.00460068280978841!GO:0051101;regulation of DNA binding;0.00460584065201125!GO:0051098;regulation of binding;0.00463446935409357!GO:0030132;clathrin coat of coated pit;0.00463446935409357!GO:0007067;mitosis;0.00470502154590934!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00473189347316549!GO:0030521;androgen receptor signaling pathway;0.00473189347316549!GO:0006520;amino acid metabolic process;0.00518214936096557!GO:0005791;rough endoplasmic reticulum;0.00552110796737318!GO:0043065;positive regulation of apoptosis;0.00561670393162161!GO:0003746;translation elongation factor activity;0.00581930558806509!GO:0007265;Ras protein signal transduction;0.0058222128903497!GO:0016272;prefoldin complex;0.00582839355324626!GO:0033673;negative regulation of kinase activity;0.00603759966892093!GO:0006469;negative regulation of protein kinase activity;0.00603759966892093!GO:0008243;plasminogen activator activity;0.00617926706609782!GO:0006417;regulation of translation;0.00638786001420364!GO:0043068;positive regulation of programmed cell death;0.0064279955438329!GO:0009893;positive regulation of metabolic process;0.00644577437694587!GO:0006401;RNA catabolic process;0.00644577437694587!GO:0019210;kinase inhibitor activity;0.00648323203257831!GO:0045926;negative regulation of growth;0.00648323203257831!GO:0048487;beta-tubulin binding;0.00648323203257831!GO:0008270;zinc ion binding;0.00649561200417567!GO:0051539;4 iron, 4 sulfur cluster binding;0.00664486651449065!GO:0006334;nucleosome assembly;0.00665139076840531!GO:0008234;cysteine-type peptidase activity;0.00673290441801982!GO:0006984;ER-nuclear signaling pathway;0.00687936399757329!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.006911056362567!GO:0051087;chaperone binding;0.00727802582177418!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0073331589598145!GO:0005099;Ras GTPase activator activity;0.007365869449043!GO:0030658;transport vesicle membrane;0.00738136385203896!GO:0042802;identical protein binding;0.00740886856514032!GO:0031901;early endosome membrane;0.00756070805400836!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00764553545187564!GO:0004004;ATP-dependent RNA helicase activity;0.00771408908488348!GO:0030659;cytoplasmic vesicle membrane;0.00771408908488348!GO:0040008;regulation of growth;0.00792561531280775!GO:0030880;RNA polymerase complex;0.00792561531280775!GO:0003711;transcription elongation regulator activity;0.00805965989568842!GO:0043433;negative regulation of transcription factor activity;0.00808638123104048!GO:0046483;heterocycle metabolic process;0.00816285548630704!GO:0007006;mitochondrial membrane organization and biogenesis;0.00828413369520209!GO:0030027;lamellipodium;0.00837727814582431!GO:0051329;interphase of mitotic cell cycle;0.00870398901053295!GO:0046474;glycerophospholipid biosynthetic process;0.00880091795384717!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00892545115429752!GO:0046914;transition metal ion binding;0.00917745281808486!GO:0007010;cytoskeleton organization and biogenesis;0.00921095643493832!GO:0008033;tRNA processing;0.00938276109205635!GO:0017166;vinculin binding;0.00994545806552644!GO:0045936;negative regulation of phosphate metabolic process;0.0100999403177841!GO:0006355;regulation of transcription, DNA-dependent;0.0101348088163318!GO:0050681;androgen receptor binding;0.010254211950775!GO:0043284;biopolymer biosynthetic process;0.010254211950775!GO:0031497;chromatin assembly;0.0111908930523222!GO:0030176;integral to endoplasmic reticulum membrane;0.0112859493004196!GO:0051348;negative regulation of transferase activity;0.0113412861911241!GO:0031902;late endosome membrane;0.0116077278041199!GO:0006595;polyamine metabolic process;0.0117468121987818!GO:0008139;nuclear localization sequence binding;0.011869231905972!GO:0000339;RNA cap binding;0.0119906552373307!GO:0005083;small GTPase regulator activity;0.0120336278393868!GO:0006405;RNA export from nucleus;0.0120410599075081!GO:0009615;response to virus;0.0122709459090713!GO:0051301;cell division;0.0125236187537134!GO:0006807;nitrogen compound metabolic process;0.012569042667843!GO:0006518;peptide metabolic process;0.0126462857214063!GO:0043022;ribosome binding;0.0126581762464242!GO:0006497;protein amino acid lipidation;0.012743136743322!GO:0031625;ubiquitin protein ligase binding;0.0129382862779276!GO:0030118;clathrin coat;0.013039754114621!GO:0009889;regulation of biosynthetic process;0.013272139602954!GO:0000118;histone deacetylase complex;0.0134337658905783!GO:0008283;cell proliferation;0.0134571130024437!GO:0044452;nucleolar part;0.0136310852362775!GO:0030032;lamellipodium biogenesis;0.0137101011302713!GO:0030518;steroid hormone receptor signaling pathway;0.0138200914104518!GO:0032940;secretion by cell;0.013859707108591!GO:0006509;membrane protein ectodomain proteolysis;0.0145519895146378!GO:0033619;membrane protein proteolysis;0.0145519895146378!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.014659713840755!GO:0015399;primary active transmembrane transporter activity;0.014659713840755!GO:0016251;general RNA polymerase II transcription factor activity;0.0148373316460964!GO:0006376;mRNA splice site selection;0.0150974823235641!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0150974823235641!GO:0051059;NF-kappaB binding;0.0151019550677383!GO:0044433;cytoplasmic vesicle part;0.0152207261221359!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0152207261221359!GO:0000428;DNA-directed RNA polymerase complex;0.0152207261221359!GO:0046822;regulation of nucleocytoplasmic transport;0.0155265864982621!GO:0008180;signalosome;0.0157446367147958!GO:0005869;dynactin complex;0.0158292221754359!GO:0051325;interphase;0.0159380560549305!GO:0005774;vacuolar membrane;0.0159932782855069!GO:0012506;vesicle membrane;0.0161130241632102!GO:0003702;RNA polymerase II transcription factor activity;0.0164636510970059!GO:0043549;regulation of kinase activity;0.0164636510970059!GO:0016584;nucleosome positioning;0.0164636510970059!GO:0003684;damaged DNA binding;0.0164636510970059!GO:0005684;U2-dependent spliceosome;0.0168913128750487!GO:0018193;peptidyl-amino acid modification;0.017055661812433!GO:0006818;hydrogen transport;0.0171439820744931!GO:0030041;actin filament polymerization;0.0171667305358538!GO:0051338;regulation of transferase activity;0.0173016591199603!GO:0008632;apoptotic program;0.0173201538459204!GO:0032507;maintenance of cellular protein localization;0.0173201538459204!GO:0006261;DNA-dependent DNA replication;0.0173201538459204!GO:0050811;GABA receptor binding;0.0176860113019148!GO:0000096;sulfur amino acid metabolic process;0.0179256413424196!GO:0048144;fibroblast proliferation;0.018203986273352!GO:0048145;regulation of fibroblast proliferation;0.018203986273352!GO:0031529;ruffle organization and biogenesis;0.0185653088390826!GO:0030660;Golgi-associated vesicle membrane;0.0185903519859622!GO:0048146;positive regulation of fibroblast proliferation;0.0191226630111582!GO:0003779;actin binding;0.0191484019669598!GO:0006950;response to stress;0.0197203476355178!GO:0031326;regulation of cellular biosynthetic process;0.0197483304435867!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0198398094759853!GO:0022406;membrane docking;0.0200003690673279!GO:0048278;vesicle docking;0.0200003690673279!GO:0005637;nuclear inner membrane;0.020122724852327!GO:0022415;viral reproductive process;0.0203493943115777!GO:0001952;regulation of cell-matrix adhesion;0.0204662556669228!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0208846086024717!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0208846086024717!GO:0046467;membrane lipid biosynthetic process;0.021095804262653!GO:0006607;NLS-bearing substrate import into nucleus;0.0212166638564004!GO:0030384;phosphoinositide metabolic process;0.0212166638564004!GO:0051287;NAD binding;0.0213148547055868!GO:0046426;negative regulation of JAK-STAT cascade;0.0224156722253331!GO:0007030;Golgi organization and biogenesis;0.0225590272880874!GO:0015992;proton transport;0.0226229000688988!GO:0042326;negative regulation of phosphorylation;0.0233291953198589!GO:0019752;carboxylic acid metabolic process;0.0233674168426132!GO:0008097;5S rRNA binding;0.0234310205352853!GO:0030145;manganese ion binding;0.0236018618542131!GO:0031325;positive regulation of cellular metabolic process;0.023616114847551!GO:0043407;negative regulation of MAP kinase activity;0.0238881085303264!GO:0006082;organic acid metabolic process;0.0239559072460684!GO:0030031;cell projection biogenesis;0.0245749360596294!GO:0003682;chromatin binding;0.0249376913083228!GO:0030224;monocyte differentiation;0.0255131630845239!GO:0001666;response to hypoxia;0.0257263635526902!GO:0005100;Rho GTPase activator activity;0.0259962841441837!GO:0042158;lipoprotein biosynthetic process;0.0259962841441837!GO:0006354;RNA elongation;0.0263106687533058!GO:0007004;telomere maintenance via telomerase;0.0265460597299768!GO:0043495;protein anchor;0.0265462903794159!GO:0051270;regulation of cell motility;0.0274885312482037!GO:0000287;magnesium ion binding;0.0275149345648608!GO:0004674;protein serine/threonine kinase activity;0.0275389011996411!GO:0000059;protein import into nucleus, docking;0.0278998514743933!GO:0003678;DNA helicase activity;0.0282355124649923!GO:0005832;chaperonin-containing T-complex;0.0286190809587928!GO:0045859;regulation of protein kinase activity;0.0291301648378483!GO:0006302;double-strand break repair;0.0293904630265129!GO:0006904;vesicle docking during exocytosis;0.0298024994354201!GO:0008637;apoptotic mitochondrial changes;0.0302116363416031!GO:0009308;amine metabolic process;0.0303317467134588!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0305340802907452!GO:0046519;sphingoid metabolic process;0.0311345306188725!GO:0051052;regulation of DNA metabolic process;0.0314019726239851!GO:0006897;endocytosis;0.0316577341356966!GO:0010324;membrane invagination;0.0316577341356966!GO:0000060;protein import into nucleus, translocation;0.0318639956653695!GO:0031543;peptidyl-proline dioxygenase activity;0.0319784994816282!GO:0004680;casein kinase activity;0.0319784994816282!GO:0008154;actin polymerization and/or depolymerization;0.0319808546576802!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0321650115793349!GO:0031124;mRNA 3'-end processing;0.0324106041163792!GO:0000792;heterochromatin;0.032760223740123!GO:0032200;telomere organization and biogenesis;0.033403677120434!GO:0000723;telomere maintenance;0.033403677120434!GO:0035035;histone acetyltransferase binding;0.0336971404353559!GO:0045428;regulation of nitric oxide biosynthetic process;0.0338493195817344!GO:0051272;positive regulation of cell motility;0.0342276190094138!GO:0040017;positive regulation of locomotion;0.0342276190094138!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0344537516298383!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0344537516298383!GO:0007034;vacuolar transport;0.0347240978090282!GO:0032906;transforming growth factor-beta2 production;0.0347880329372651!GO:0032909;regulation of transforming growth factor-beta2 production;0.0347880329372651!GO:0051651;maintenance of cellular localization;0.0350924350266957!GO:0006650;glycerophospholipid metabolic process;0.0352811859674496!GO:0051128;regulation of cellular component organization and biogenesis;0.0353979849653172!GO:0044437;vacuolar part;0.0354468833013474!GO:0005669;transcription factor TFIID complex;0.0355232968585485!GO:0022890;inorganic cation transmembrane transporter activity;0.0355232968585485!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0355479359690466!GO:0007040;lysosome organization and biogenesis;0.0359561438794968!GO:0016407;acetyltransferase activity;0.0377195195723027!GO:0009112;nucleobase metabolic process;0.0377838268761561!GO:0005862;muscle thin filament tropomyosin;0.0387984383332641!GO:0007041;lysosomal transport;0.0389069881853808!GO:0006506;GPI anchor biosynthetic process;0.0395227685356465!GO:0030119;AP-type membrane coat adaptor complex;0.0395555543252315!GO:0007162;negative regulation of cell adhesion;0.0395865820793098!GO:0022408;negative regulation of cell-cell adhesion;0.0396445195319497!GO:0006740;NADPH regeneration;0.0396445195319497!GO:0006098;pentose-phosphate shunt;0.0396445195319497!GO:0008286;insulin receptor signaling pathway;0.0396445195319497!GO:0005765;lysosomal membrane;0.040109785073348!GO:0033239;negative regulation of amine metabolic process;0.0403093250858578!GO:0045763;negative regulation of amino acid metabolic process;0.0403093250858578!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0403093250858578!GO:0008538;proteasome activator activity;0.0403093250858578!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0410312229691795!GO:0006917;induction of apoptosis;0.0425583292266502!GO:0019798;procollagen-proline dioxygenase activity;0.0427934663186299!GO:0043624;cellular protein complex disassembly;0.0431847744160888!GO:0030522;intracellular receptor-mediated signaling pathway;0.0433974017518624!GO:0006378;mRNA polyadenylation;0.0439147356092407!GO:0007033;vacuole organization and biogenesis;0.0448285452283579!GO:0032318;regulation of Ras GTPase activity;0.0450679785690907!GO:0030984;kininogen binding;0.0455319937177315!GO:0004213;cathepsin B activity;0.0455319937177315!GO:0045185;maintenance of protein localization;0.0458419728279803!GO:0006519;amino acid and derivative metabolic process;0.0459107437435229!GO:0006611;protein export from nucleus;0.0462262990017143!GO:0016301;kinase activity;0.0473425483412638!GO:0017134;fibroblast growth factor binding;0.0473712916418682!GO:0043087;regulation of GTPase activity;0.0474096439689378!GO:0030833;regulation of actin filament polymerization;0.0474096439689378!GO:0009303;rRNA transcription;0.0476541318994735!GO:0006505;GPI anchor metabolic process;0.0480240015847657!GO:0040011;locomotion;0.0480240015847657!GO:0030125;clathrin vesicle coat;0.0483263582762223!GO:0030665;clathrin coated vesicle membrane;0.0483263582762223!GO:0005720;nuclear heterochromatin;0.0485393196829018!GO:0030100;regulation of endocytosis;0.0485393196829018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0485393196829018!GO:0015002;heme-copper terminal oxidase activity;0.0485393196829018!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0485393196829018!GO:0004129;cytochrome-c oxidase activity;0.0485393196829018!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.048662536930507!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.048662536930507!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.048662536930507!GO:0006289;nucleotide-excision repair;0.0488583947003823!GO:0006338;chromatin remodeling;0.0490714062022498!GO:0019783;small conjugating protein-specific protease activity;0.0493518689666274!GO:0007021;tubulin folding;0.0493518689666274!GO:0050662;coenzyme binding;0.0497373054925989!GO:0031371;ubiquitin conjugating enzyme complex;0.0499282176603185 | |||
|sample_id=10428 | |sample_id=10428 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=thyroid | |sample_tissue=thyroid | ||
|top_motifs=NKX2-1,4:2.02671835886;NKX3-1:1.617003361;EN1,2:1.47844367434;NFIX:1.31515308015;bHLH_family:1.15622804955;HBP1_HMGB_SSRP1_UBTF:1.09678594036;HIF1A:1.01475358668;EVI1:1.01151918087;AIRE:1.00106992477;PAX5:1.00054613577;TFDP1:0.973749769304;RXR{A,B,G}:0.924602930724;FOXA2:0.915437000062;DBP:0.908729789657;PAX4:0.905622221986;GTF2A1,2:0.87064598238;TBX4,5:0.864825477491;ZBTB16:0.809843093262;ELK1,4_GABP{A,B1}:0.804001927021;ATF6:0.785413927192;FOXP1:0.770953720226;ZFP161:0.769820581701;PITX1..3:0.753722635774;HOX{A4,D4}:0.6787277893;ONECUT1,2:0.675462133912;POU1F1:0.634033534893;ALX1:0.596210382622;AHR_ARNT_ARNT2:0.591915014259;MAFB:0.573094207432;LHX3,4:0.557852396129;IRF7:0.553789357351;FOXL1:0.530704564721;HLF:0.530167044679;PPARG:0.528281257411;IRF1,2:0.528112305289;NHLH1,2:0.516914854813;CEBPA,B_DDIT3:0.513496089148;TLX1..3_NFIC{dimer}:0.495520690186;BPTF:0.482235573961;DMAP1_NCOR{1,2}_SMARC:0.450714184057;PRDM1:0.433486861174;SP1:0.425795928342;MTE{core}:0.425415387385;NKX2-2,8:0.409873389188;TFAP2{A,C}:0.386786404727;CDC5L:0.377585452822;VSX1,2:0.37336774332;MED-1{core}:0.364750648534;ARID5B:0.361915142762;TEAD1:0.358290196339;FOX{D1,D2}:0.354561589382;FOXQ1:0.347286482938;STAT5{A,B}:0.345598166056;MAZ:0.342561681152;UFEwm:0.318248813782;HIC1:0.31119312307;HOXA9_MEIS1:0.300897693183;NKX3-2:0.300683469256;PATZ1:0.286186686778;FOS_FOS{B,L1}_JUN{B,D}:0.260623645744;TEF:0.247043601498;HSF1,2:0.244842825724;ATF5_CREB3:0.241212558275;TOPORS:0.240037092512;BACH2:0.235391185001;POU2F1..3:0.231616078412;CDX1,2,4:0.228121832722;NRF1:0.224989766713;EGR1..3:0.218594957516;FOSL2:0.216116814315;EP300:0.212676870306;FOXO1,3,4:0.19436610153;FOX{F1,F2,J1}:0.189193138388;POU5F1:0.189144548473;ELF1,2,4:0.181562901522;NFKB1_REL_RELA:0.177161613161;NFE2:0.160749305805;TFAP2B:0.158488168781;ZBTB6:0.157013734554;NFATC1..3:0.156735512945;HES1:0.149339162284;GZF1:0.148716619547;FOX{I1,J2}:0.143431244972;PAX8:0.133005353382;ATF4:0.131807304446;AR:0.12898649159;NKX6-1,2:0.117504439534;FOXN1:0.112664056322;CRX:0.107467353888;MYFfamily:0.105386276487;MYBL2:0.103848862052;SRF:0.0731929722078;SOX17:0.0715044083848;MZF1:0.0642575215622;MTF1:0.0617955964998;STAT2,4,6:0.0607084150174;SOX{8,9,10}:0.0575665367547;POU3F1..4:0.0563681521808;ZNF238:0.0537043016163;SPZ1:0.0501740945517;TBP:0.0233958957656;GFI1B:0.0218200960807;RREB1:0.0125855251191;NR6A1:0.00107842376824;ZNF143:-0.00617871555207;BREu{core}:-0.00648762674336;FOXD3:-0.0145189312237;HOX{A5,B5}:-0.0295855119173;ADNP_IRX_SIX_ZHX:-0.0408518919235;NFE2L2:-0.0411310125143;HNF1A:-0.0414941969194;LEF1_TCF7_TCF7L1,2:-0.0838493606291;GATA6:-0.0900804642917;HMGA1,2:-0.10256266581;SOX2:-0.127275291426;REST:-0.128086779768;YY1:-0.135429882743;GTF2I:-0.136020760658;T:-0.138531162542;ETS1,2:-0.141996604548;SREBF1,2:-0.15634681561;RUNX1..3:-0.177558905687;XCPE1{core}:-0.186085023913;POU6F1:-0.199674641605;TLX2:-0.21355128983;NFY{A,B,C}:-0.217179793207;SPI1:-0.217286905383;CUX2:-0.221243142353;TP53:-0.223704589261;EBF1:-0.240593608529;RORA:-0.257403166936;ZNF384:-0.260994486022;XBP1:-0.264149719458;PAX2:-0.273801935005;MYOD1:-0.301682040218;NFIL3:-0.310422291977;RFX1:-0.32232530197;MEF2{A,B,C,D}:-0.340668831396;NR3C1:-0.363128642129;GLI1..3:-0.369586134901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.400900675153;NR1H4:-0.40105293741;HMX1:-0.402094987907;KLF4:-0.403376867232;PRRX1,2:-0.416418081206;ZEB1:-0.421960263667;SOX5:-0.425870023794;IKZF2:-0.431402626759;SPIB:-0.436722408054;TAL1_TCF{3,4,12}:-0.437856177768;HNF4A_NR2F1,2:-0.440206352804;PAX3,7:-0.443308148631;ALX4:-0.456935073598;GFI1:-0.466957641073;SMAD1..7,9:-0.471271403296;ATF2:-0.474546699606;STAT1,3:-0.47788339954;MYB:-0.481245864941;PDX1:-0.490400078027;NFE2L1:-0.490968333325;PAX6:-0.497600212616;RFX2..5_RFXANK_RFXAP:-0.501275008416;IKZF1:-0.50342528897;PBX1:-0.506214408286;E2F1..5:-0.509007444339;TFCP2:-0.509063049014;ZIC1..3:-0.525457555456;TGIF1:-0.537003491657;TFAP4:-0.544708019315;HAND1,2:-0.546572523293;ZNF423:-0.5547825524;ZNF148:-0.605820035703;FOXP3:-0.611596661929;RBPJ:-0.644405558695;RXRA_VDR{dimer}:-0.64631634962;OCT4_SOX2{dimer}:-0.685769628172;FOXM1:-0.692419847695;CREB1:-0.742115698239;NANOG{mouse}:-0.769590869622;LMO2:-0.774055313491;JUN:-0.777430631825;NKX2-3_NKX2-5:-0.844197836068;SNAI1..3:-0.846652397775;GATA4:-0.86975073851;GCM1,2:-0.935541808184;ESR1:-1.01197590083;PAX1,9:-1.06965912743;HOX{A6,A7,B6,B7}:-1.1322636278;NANOG:-1.15740364088;ESRRA:-1.1955859622;NR5A1,2:-1.79244209627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.99476241037 | |top_motifs=NKX2-1,4:2.02671835886;NKX3-1:1.617003361;EN1,2:1.47844367434;NFIX:1.31515308015;bHLH_family:1.15622804955;HBP1_HMGB_SSRP1_UBTF:1.09678594036;HIF1A:1.01475358668;EVI1:1.01151918087;AIRE:1.00106992477;PAX5:1.00054613577;TFDP1:0.973749769304;RXR{A,B,G}:0.924602930724;FOXA2:0.915437000062;DBP:0.908729789657;PAX4:0.905622221986;GTF2A1,2:0.87064598238;TBX4,5:0.864825477491;ZBTB16:0.809843093262;ELK1,4_GABP{A,B1}:0.804001927021;ATF6:0.785413927192;FOXP1:0.770953720226;ZFP161:0.769820581701;PITX1..3:0.753722635774;HOX{A4,D4}:0.6787277893;ONECUT1,2:0.675462133912;POU1F1:0.634033534893;ALX1:0.596210382622;AHR_ARNT_ARNT2:0.591915014259;MAFB:0.573094207432;LHX3,4:0.557852396129;IRF7:0.553789357351;FOXL1:0.530704564721;HLF:0.530167044679;PPARG:0.528281257411;IRF1,2:0.528112305289;NHLH1,2:0.516914854813;CEBPA,B_DDIT3:0.513496089148;TLX1..3_NFIC{dimer}:0.495520690186;BPTF:0.482235573961;DMAP1_NCOR{1,2}_SMARC:0.450714184057;PRDM1:0.433486861174;SP1:0.425795928342;MTE{core}:0.425415387385;NKX2-2,8:0.409873389188;TFAP2{A,C}:0.386786404727;CDC5L:0.377585452822;VSX1,2:0.37336774332;MED-1{core}:0.364750648534;ARID5B:0.361915142762;TEAD1:0.358290196339;FOX{D1,D2}:0.354561589382;FOXQ1:0.347286482938;STAT5{A,B}:0.345598166056;MAZ:0.342561681152;UFEwm:0.318248813782;HIC1:0.31119312307;HOXA9_MEIS1:0.300897693183;NKX3-2:0.300683469256;PATZ1:0.286186686778;FOS_FOS{B,L1}_JUN{B,D}:0.260623645744;TEF:0.247043601498;HSF1,2:0.244842825724;ATF5_CREB3:0.241212558275;TOPORS:0.240037092512;BACH2:0.235391185001;POU2F1..3:0.231616078412;CDX1,2,4:0.228121832722;NRF1:0.224989766713;EGR1..3:0.218594957516;FOSL2:0.216116814315;EP300:0.212676870306;FOXO1,3,4:0.19436610153;FOX{F1,F2,J1}:0.189193138388;POU5F1:0.189144548473;ELF1,2,4:0.181562901522;NFKB1_REL_RELA:0.177161613161;NFE2:0.160749305805;TFAP2B:0.158488168781;ZBTB6:0.157013734554;NFATC1..3:0.156735512945;HES1:0.149339162284;GZF1:0.148716619547;FOX{I1,J2}:0.143431244972;PAX8:0.133005353382;ATF4:0.131807304446;AR:0.12898649159;NKX6-1,2:0.117504439534;FOXN1:0.112664056322;CRX:0.107467353888;MYFfamily:0.105386276487;MYBL2:0.103848862052;SRF:0.0731929722078;SOX17:0.0715044083848;MZF1:0.0642575215622;MTF1:0.0617955964998;STAT2,4,6:0.0607084150174;SOX{8,9,10}:0.0575665367547;POU3F1..4:0.0563681521808;ZNF238:0.0537043016163;SPZ1:0.0501740945517;TBP:0.0233958957656;GFI1B:0.0218200960807;RREB1:0.0125855251191;NR6A1:0.00107842376824;ZNF143:-0.00617871555207;BREu{core}:-0.00648762674336;FOXD3:-0.0145189312237;HOX{A5,B5}:-0.0295855119173;ADNP_IRX_SIX_ZHX:-0.0408518919235;NFE2L2:-0.0411310125143;HNF1A:-0.0414941969194;LEF1_TCF7_TCF7L1,2:-0.0838493606291;GATA6:-0.0900804642917;HMGA1,2:-0.10256266581;SOX2:-0.127275291426;REST:-0.128086779768;YY1:-0.135429882743;GTF2I:-0.136020760658;T:-0.138531162542;ETS1,2:-0.141996604548;SREBF1,2:-0.15634681561;RUNX1..3:-0.177558905687;XCPE1{core}:-0.186085023913;POU6F1:-0.199674641605;TLX2:-0.21355128983;NFY{A,B,C}:-0.217179793207;SPI1:-0.217286905383;CUX2:-0.221243142353;TP53:-0.223704589261;EBF1:-0.240593608529;RORA:-0.257403166936;ZNF384:-0.260994486022;XBP1:-0.264149719458;PAX2:-0.273801935005;MYOD1:-0.301682040218;NFIL3:-0.310422291977;RFX1:-0.32232530197;MEF2{A,B,C,D}:-0.340668831396;NR3C1:-0.363128642129;GLI1..3:-0.369586134901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.400900675153;NR1H4:-0.40105293741;HMX1:-0.402094987907;KLF4:-0.403376867232;PRRX1,2:-0.416418081206;ZEB1:-0.421960263667;SOX5:-0.425870023794;IKZF2:-0.431402626759;SPIB:-0.436722408054;TAL1_TCF{3,4,12}:-0.437856177768;HNF4A_NR2F1,2:-0.440206352804;PAX3,7:-0.443308148631;ALX4:-0.456935073598;GFI1:-0.466957641073;SMAD1..7,9:-0.471271403296;ATF2:-0.474546699606;STAT1,3:-0.47788339954;MYB:-0.481245864941;PDX1:-0.490400078027;NFE2L1:-0.490968333325;PAX6:-0.497600212616;RFX2..5_RFXANK_RFXAP:-0.501275008416;IKZF1:-0.50342528897;PBX1:-0.506214408286;E2F1..5:-0.509007444339;TFCP2:-0.509063049014;ZIC1..3:-0.525457555456;TGIF1:-0.537003491657;TFAP4:-0.544708019315;HAND1,2:-0.546572523293;ZNF423:-0.5547825524;ZNF148:-0.605820035703;FOXP3:-0.611596661929;RBPJ:-0.644405558695;RXRA_VDR{dimer}:-0.64631634962;OCT4_SOX2{dimer}:-0.685769628172;FOXM1:-0.692419847695;CREB1:-0.742115698239;NANOG{mouse}:-0.769590869622;LMO2:-0.774055313491;JUN:-0.777430631825;NKX2-3_NKX2-5:-0.844197836068;SNAI1..3:-0.846652397775;GATA4:-0.86975073851;GCM1,2:-0.935541808184;ESR1:-1.01197590083;PAX1,9:-1.06965912743;HOX{A6,A7,B6,B7}:-1.1322636278;NANOG:-1.15740364088;ESRRA:-1.1955859622;NR5A1,2:-1.79244209627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.99476241037 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10428-106D5;search_select_hide=table117:FF:10428-106D5 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | anaplastic carcinoma cell line:8305C |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10745 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10745
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10745
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.115 |
| 10 | 10 | 0.313 |
| 100 | 100 | 0.98 |
| 101 | 101 | 0.573 |
| 102 | 102 | 0.119 |
| 103 | 103 | 0.176 |
| 104 | 104 | 0.471 |
| 105 | 105 | 0.124 |
| 106 | 106 | 0.584 |
| 107 | 107 | 0.641 |
| 108 | 108 | 0.495 |
| 109 | 109 | 0.0768 |
| 11 | 11 | 0.243 |
| 110 | 110 | 0.705 |
| 111 | 111 | 0.352 |
| 112 | 112 | 0.00396 |
| 113 | 113 | 0.107 |
| 114 | 114 | 0.083 |
| 115 | 115 | 0.239 |
| 116 | 116 | 0.526 |
| 117 | 117 | 0.419 |
| 118 | 118 | 0.925 |
| 119 | 119 | 0.32 |
| 12 | 12 | 0.655 |
| 120 | 120 | 0.715 |
| 121 | 121 | 0.558 |
| 122 | 122 | 0.0238 |
| 123 | 123 | 0.617 |
| 124 | 124 | 0.409 |
| 125 | 125 | 0.789 |
| 126 | 126 | 0.446 |
| 127 | 127 | 0.188 |
| 128 | 128 | 0.379 |
| 129 | 129 | 0.158 |
| 13 | 13 | 0.213 |
| 130 | 130 | 0.685 |
| 131 | 131 | 0.535 |
| 132 | 132 | 0.993 |
| 133 | 133 | 0.737 |
| 134 | 134 | 0.691 |
| 135 | 135 | 0.652 |
| 136 | 136 | 0.397 |
| 137 | 137 | 0.851 |
| 138 | 138 | 0.501 |
| 139 | 139 | 0.941 |
| 14 | 14 | 0.224 |
| 140 | 140 | 0.012 |
| 141 | 141 | 0.0308 |
| 142 | 142 | 0.122 |
| 143 | 143 | 0.832 |
| 144 | 144 | 0.908 |
| 145 | 145 | 0.969 |
| 146 | 146 | 0.931 |
| 147 | 147 | 0.71 |
| 148 | 148 | 0.0647 |
| 149 | 149 | 0.474 |
| 15 | 15 | 0.813 |
| 150 | 150 | 0.789 |
| 151 | 151 | 0.408 |
| 152 | 152 | 0.18 |
| 153 | 153 | 0.555 |
| 154 | 154 | 0.844 |
| 155 | 155 | 0.173 |
| 156 | 156 | 0.536 |
| 157 | 157 | 0.907 |
| 158 | 158 | 0.345 |
| 159 | 159 | 0.604 |
| 16 | 16 | 0.257 |
| 160 | 160 | 0.0969 |
| 161 | 161 | 0.749 |
| 162 | 162 | 0.581 |
| 163 | 163 | 0.109 |
| 164 | 164 | 0.374 |
| 165 | 165 | 0.955 |
| 166 | 166 | 0.613 |
| 167 | 167 | 0.533 |
| 168 | 168 | 0.0427 |
| 169 | 169 | 0.00728 |
| 17 | 17 | 0.166 |
| 18 | 18 | 0.784 |
| 19 | 19 | 0.212 |
| 2 | 2 | 0.455 |
| 20 | 20 | 0.387 |
| 21 | 21 | 0.713 |
| 22 | 22 | 0.0598 |
| 23 | 23 | 0.949 |
| 24 | 24 | 0.395 |
| 25 | 25 | 0.225 |
| 26 | 26 | 0.418 |
| 27 | 27 | 0.135 |
| 28 | 28 | 0.893 |
| 29 | 29 | 0.286 |
| 3 | 3 | 0.66 |
| 30 | 30 | 0.671 |
| 31 | 31 | 0.255 |
| 32 | 32 | 0.00641 |
| 33 | 33 | 0.903 |
| 34 | 34 | 0.0584 |
| 35 | 35 | 0.748 |
| 36 | 36 | 0.454 |
| 37 | 37 | 0.198 |
| 38 | 38 | 0.165 |
| 39 | 39 | 0.799 |
| 4 | 4 | 0.384 |
| 40 | 40 | 0.0861 |
| 41 | 41 | 0.0103 |
| 42 | 42 | 0.901 |
| 43 | 43 | 0.156 |
| 44 | 44 | 0.034 |
| 45 | 45 | 0.61 |
| 46 | 46 | 0.394 |
| 47 | 47 | 0.128 |
| 48 | 48 | 0.329 |
| 49 | 49 | 0.0929 |
| 5 | 5 | 0.863 |
| 50 | 50 | 0.978 |
| 51 | 51 | 0.124 |
| 52 | 52 | 0.204 |
| 53 | 53 | 0.634 |
| 54 | 54 | 0.296 |
| 55 | 55 | 0.162 |
| 56 | 56 | 0.317 |
| 57 | 57 | 0.688 |
| 58 | 58 | 0.108 |
| 59 | 59 | 0.0101 |
| 6 | 6 | 0.65 |
| 60 | 60 | 0.0752 |
| 61 | 61 | 0.293 |
| 62 | 62 | 0.0388 |
| 63 | 63 | 0.589 |
| 64 | 64 | 0.526 |
| 65 | 65 | 0.26 |
| 66 | 66 | 0.945 |
| 67 | 67 | 0.911 |
| 68 | 68 | 0.94 |
| 69 | 69 | 0.526 |
| 7 | 7 | 0.0466 |
| 70 | 70 | 0.164 |
| 71 | 71 | 0.189 |
| 72 | 72 | 0.372 |
| 73 | 73 | 0.0822 |
| 74 | 74 | 0.269 |
| 75 | 75 | 0.294 |
| 76 | 76 | 0.397 |
| 77 | 77 | 0.052 |
| 78 | 78 | 0.153 |
| 79 | 79 | 0.576 |
| 8 | 8 | 0.215 |
| 80 | 80 | 0.205 |
| 81 | 81 | 0.397 |
| 82 | 82 | 0.0595 |
| 83 | 83 | 0.315 |
| 84 | 84 | 0.684 |
| 85 | 85 | 0.194 |
| 86 | 86 | 0.885 |
| 87 | 87 | 0.425 |
| 88 | 88 | 0.873 |
| 89 | 89 | 0.0342 |
| 9 | 9 | 0.279 |
| 90 | 90 | 0.766 |
| 91 | 91 | 0.52 |
| 92 | 92 | 0.283 |
| 93 | 93 | 0.819 |
| 94 | 94 | 0.585 |
| 95 | 95 | 0.0534 |
| 96 | 96 | 0.0968 |
| 97 | 97 | 0.638 |
| 98 | 98 | 0.00228 |
| 99 | 99 | 0.366 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10745
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100919 8305C cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103209 (anaplastic thyroid cancer cell line sample)
0101610 (thyroid cancer cell line sample)
0100919 (8305C cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)
