FF:10550-107I1: Difference between revisions

Latest revision as of 14:28, 3 June 2020

Name:	oral squamous cell carcinoma cell line:HO-1-u-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11287
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	HO-1-u-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005382

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11287		CAGE		DRX007973		DRR008845

Accession ID Hg19

Library id		BAM		CTSS
CNhs11287		DRZ000270		DRZ001655

Accession ID Hg38

Library id		BAM		CTSS
CNhs11287		DRZ011620		DRZ013005

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0841
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.492
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0416
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0358
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.197
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0484
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.243
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.459
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.092
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0484
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0484
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.45
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11287

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0012
MA0003.1	MA0003.1	0.218
MA0004.1	MA0004.1	0.186
MA0006.1	MA0006.1	0.402
MA0007.1	MA0007.1	0.764
MA0009.1	MA0009.1	0.297
MA0014.1	MA0014.1	0.0428
MA0017.1	MA0017.1	0.343
MA0018.2	MA0018.2	0.0162
MA0019.1	MA0019.1	0.732
MA0024.1	MA0024.1	2.66232e-4
MA0025.1	MA0025.1	0.555
MA0027.1	MA0027.1	0.119
MA0028.1	MA0028.1	0.037
MA0029.1	MA0029.1	0.0756
MA0030.1	MA0030.1	0.297
MA0031.1	MA0031.1	0.118
MA0035.2	MA0035.2	0.0745
MA0038.1	MA0038.1	2.32456e-4
MA0039.2	MA0039.2	3.71953e-4
MA0040.1	MA0040.1	0.516
MA0041.1	MA0041.1	0.647
MA0042.1	MA0042.1	0.694
MA0043.1	MA0043.1	0.00253
MA0046.1	MA0046.1	0.577
MA0047.2	MA0047.2	0.112
MA0048.1	MA0048.1	0.189
MA0050.1	MA0050.1	1.27532e-7
MA0051.1	MA0051.1	5.30532e-5
MA0052.1	MA0052.1	0.117
MA0055.1	MA0055.1	8.56634e-5
MA0057.1	MA0057.1	0.734
MA0058.1	MA0058.1	0.277
MA0059.1	MA0059.1	0.289
MA0060.1	MA0060.1	1.02741e-19
MA0061.1	MA0061.1	0.0749
MA0062.2	MA0062.2	0.0349
MA0065.2	MA0065.2	0.905
MA0066.1	MA0066.1	0.122
MA0067.1	MA0067.1	0.494
MA0068.1	MA0068.1	0.386
MA0069.1	MA0069.1	0.719
MA0070.1	MA0070.1	0.17
MA0071.1	MA0071.1	0.618
MA0072.1	MA0072.1	0.604
MA0073.1	MA0073.1	0.409
MA0074.1	MA0074.1	0.689
MA0076.1	MA0076.1	0.0225
MA0077.1	MA0077.1	0.206
MA0078.1	MA0078.1	0.295
MA0079.2	MA0079.2	0.804
MA0080.2	MA0080.2	1.76726e-8
MA0081.1	MA0081.1	0.101
MA0083.1	MA0083.1	0.225
MA0084.1	MA0084.1	0.378
MA0087.1	MA0087.1	0.694
MA0088.1	MA0088.1	0.471
MA0090.1	MA0090.1	0.648
MA0091.1	MA0091.1	0.00203
MA0092.1	MA0092.1	0.148
MA0093.1	MA0093.1	0.174
MA0099.2	MA0099.2	0.599
MA0100.1	MA0100.1	0.503
MA0101.1	MA0101.1	0.789
MA0102.2	MA0102.2	0.765
MA0103.1	MA0103.1	3.48759e-5
MA0104.2	MA0104.2	0.00201
MA0105.1	MA0105.1	0.00405
MA0106.1	MA0106.1	0.173
MA0107.1	MA0107.1	0.355
MA0108.2	MA0108.2	0.28
MA0111.1	MA0111.1	0.99
MA0112.2	MA0112.2	0.0359
MA0113.1	MA0113.1	0.114
MA0114.1	MA0114.1	0.968
MA0115.1	MA0115.1	0.78
MA0116.1	MA0116.1	0.0155
MA0117.1	MA0117.1	0.56
MA0119.1	MA0119.1	0.224
MA0122.1	MA0122.1	0.603
MA0124.1	MA0124.1	0.928
MA0125.1	MA0125.1	0.0365
MA0131.1	MA0131.1	0.453
MA0135.1	MA0135.1	0.726
MA0136.1	MA0136.1	1.04228e-4
MA0137.2	MA0137.2	0.274
MA0138.2	MA0138.2	0.303
MA0139.1	MA0139.1	0.679
MA0140.1	MA0140.1	0.067
MA0141.1	MA0141.1	0.835
MA0142.1	MA0142.1	0.0738
MA0143.1	MA0143.1	0.869
MA0144.1	MA0144.1	0.425
MA0145.1	MA0145.1	0.364
MA0146.1	MA0146.1	0.888
MA0147.1	MA0147.1	0.004
MA0148.1	MA0148.1	0.0565
MA0149.1	MA0149.1	0.0687
MA0150.1	MA0150.1	0.368
MA0152.1	MA0152.1	0.817
MA0153.1	MA0153.1	0.346
MA0154.1	MA0154.1	0.022
MA0155.1	MA0155.1	0.132
MA0156.1	MA0156.1	0.0484
MA0157.1	MA0157.1	0.284
MA0159.1	MA0159.1	0.945
MA0160.1	MA0160.1	0.573
MA0162.1	MA0162.1	0.784
MA0163.1	MA0163.1	0.0619
MA0164.1	MA0164.1	0.43
MA0258.1	MA0258.1	0.0962
MA0259.1	MA0259.1	0.0321

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11287

Novel motif	Logo	P-value
1	1	0.504
10	10	0.515
100	100	0.147
101	101	0.713
102	102	0.477
103	103	0.337
104	104	0.447
105	105	0.0913
106	106	0.00109
107	107	0.174
108	108	0.972
109	109	0.627
11	11	0.175
110	110	0.511
111	111	0.548
112	112	0.0458
113	113	0.558
114	114	0.201
115	115	0.98
116	116	0.118
117	117	0.901
118	118	0.465
119	119	0.166
12	12	0.687
120	120	0.364
121	121	0.65
122	122	0.242
123	123	0.762
124	124	0.832
125	125	0.829
126	126	0.636
127	127	0.953
128	128	0.0253
129	129	0.598
13	13	0.0442
130	130	0.277
131	131	0.38
132	132	0.623
133	133	0.00265
134	134	0.367
135	135	0.236
136	136	0.0268
137	137	0.153
138	138	0.388
139	139	0.0827
14	14	0.523
140	140	0.316
141	141	0.25
142	142	0.739
143	143	0.43
144	144	0.327
145	145	0.399
146	146	0.403
147	147	0.905
148	148	0.221
149	149	0.0294
15	15	0.528
150	150	0.591
151	151	0.38
152	152	0.296
153	153	0.561
154	154	0.102
155	155	0.747
156	156	0.807
157	157	0.883
158	158	0.944
159	159	0.43
16	16	0.483
160	160	0.517
161	161	0.559
162	162	0.9
163	163	0.195
164	164	0.339
165	165	0.636
166	166	0.422
167	167	0.144
168	168	0.513
169	169	0.124
17	17	0.656
18	18	0.117
19	19	0.0557
2	2	0.133
20	20	0.209
21	21	0.494
22	22	0.185
23	23	0.144
24	24	0.51
25	25	0.974
26	26	0.422
27	27	0.165
28	28	0.549
29	29	0.842
3	3	0.44
30	30	0.755
31	31	0.468
32	32	0.00113
33	33	0.413
34	34	0.267
35	35	0.175
36	36	0.212
37	37	0.323
38	38	0.665
39	39	0.963
4	4	0.224
40	40	0.0767
41	41	0.361
42	42	0.81
43	43	0.129
44	44	0.501
45	45	0.708
46	46	0.0788
47	47	0.642
48	48	0.901
49	49	0.493
5	5	0.298
50	50	0.641
51	51	0.243
52	52	0.476
53	53	0.493
54	54	0.315
55	55	0.266
56	56	0.633
57	57	0.778
58	58	0.536
59	59	0.0245
6	6	0.737
60	60	0.281
61	61	0.539
62	62	0.115
63	63	0.558
64	64	0.882
65	65	0.0834
66	66	2.28466e-5
67	67	0.672
68	68	0.3
69	69	0.604
7	7	0.823
70	70	0.0534
71	71	0.635
72	72	0.325
73	73	0.284
74	74	0.0947
75	75	0.877
76	76	0.849
77	77	0.0611
78	78	0.449
79	79	0.0231
8	8	0.41
80	80	0.0432
81	81	0.126
82	82	0.00214
83	83	0.189
84	84	0.844
85	85	0.00345
86	86	0.274
87	87	0.187
88	88	0.943
89	89	0.0751
9	9	0.015
90	90	0.308
91	91	0.0252
92	92	0.0236
93	93	0.712
94	94	0.0514
95	95	0.607
96	96	0.132
97	97	0.741
98	98	0.569
99	99	0.551

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11287

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102211 oral squamous cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004923,UBERON:0000161,UBERON:0005423,UBERON:0001444,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0004785,UBERON:0000925,UBERON:0003729,UBERON:0006598,UBERON:0002532,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0000165,UBERON:0007026,UBERON:0000166,UBERON:0000930,UBERON:0006601,UBERON:0006595
+|DRA_sample_Accession=CAGE@SAMD00005382
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002251,CL:0000223
+|accession_numbers=CAGE;DRX007973;DRR008845;DRZ000270;DRZ001655;DRZ011620;DRZ013005
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:1749
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0102211,FF:0102027,FF:0102709
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!1.94!96.74!IRF6;;chr1:201979743..201979762,+!p1@ELF3!1.94!85.41!ELF3;;chr3:189507432..189507459,+!p1@TP63!1.93!83.76!TP63;;chr3:181429704..181429722,+!p1@SOX2!1.91!80.10!SOX2;;chr1:201979703..201979721,+!p2@ELF3!1.75!55.80!ELF3;;chr8:10588010..10588030,-!p1@SOX7!1.73!52.26!SOX7;;chrX:30327504..30327509,-!p1@NR0B1!1.67!46.13!NR0B1;;chr10:48355030..48355090,+!p1@ZNF488!1.63!53.56!ZNF488;;chr5:2751762..2751784,-!p1@IRX2!1.58!37.04!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.57!36.22!HOXD11;;chr14:38064429..38064486,-!p1@FOXA1!1.54!33.50!FOXA1;;chr11:34642612..34642646,+!p1@EHF!1.53!33.27!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.53!32.91!GRHL2;;chr6:1312325..1312340,+!p1@FOXQ1!1.50!48.96!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!1.48!73.61!NCOA7;;chr20:55204351..55204377,+!p1@TFAP2C!1.47!36.22!TFAP2C;;chr13:73633131..73633149,+!p1@KLF5!1.42!259.77!KLF5;;chr10:64576105..64576133,-!p1@EGR2!1.42!51.43!EGR2;;chr2:176969179..176969226,+!p2@HOXD11!1.38!22.89!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!1.35!21.23!IRF6;;chr8:102504979..102505010,+!p2@GRHL2!1.34!20.64!GRHL2;;chr7:96654133..96654150,-!p1@DLX5!1.33!20.41!DLX5;;chr22:19748231..19748317,+!p1@TBX1!1.33!20.17!TBX1;;chr6:126240442..126240459,+!p4@NCOA7!1.32!25.13!NCOA7;;chr3:181429741..181429767,+!p2@SOX2!1.30!18.99!SOX2;;chr14:37131058..37131139,+!p1@PAX9!1.28!17.93!PAX9;;chr20:50721803..50721857,-!p2@ZFP64!1.22!24.66!ZFP64;;chr5:172662197..172662216,-!p1@NKX2-5!1.22!15.45!NKX2-5;;chr7:96634850..96634874,+!p3@DLX6!1.17!13.92!DLX6;;chr6:28321971..28321995,-!p1@ZNF323!1.16!13.33!ZNF323;;chr7:73038839..73038862,-!p1@MLXIPL!1.12!12.03!MLXIPL;;chr7:97840743..97840786,+!p1@BHLHA15!1.11!11.91!BHLHA15;;chr1:158969752..158969780,+!p6@IFI16!1.10!20.41!IFI16;;chr5:134369905..134369972,-!p1@PITX1!1.10!17.93!PITX1;;chr12:66218598..66218645,+!p2@HMGA2!1.09!52.73!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.05!10.26!ZNF323;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.03!KDM5D;;chr8:128748308..128748324,+!p2@MYC!1.03!274.52!MYC;;chr12:66218255..66218304,+!p3@HMGA2!1.03!26.54!HMGA2;;chr7:96635178..96635181,+!p1@DLX6!1.03!9.79!DLX6;;chr6:122720765..122720831,+!p1@HSF2!1.02!128.82!HSF2;;chr13:28543285..28543314,-!p2@CDX2!1.01!9.20!CDX2;;chrY:2803415..2803468,+!p1@ZFY!1.01!9.20!ZFY;;chr9:114287433..114287513,+!p1@ZNF483!0.99!23.36!ZNF483;;chr14:61116183..61116208,-!p1@SIX1!0.98!33.39!SIX1;;chr6:126240463..126240489,+!p6@NCOA7!0.97!9.44!NCOA7;;chr2:60780607..60780624,-!p2@BCL11A!0.94!24.30!BCL11A;;chr1:247171316..247171336,-!p3@ZNF695!0.94!11.68!ZNF695;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.55!HOXD8;;chr19:1753498..1753519,+!p1@ONECUT3!0.92!7.31!ONECUT3;;chr17:17726907..17726958,-!p2@SREBF1!0.91!46.01!SREBF1;;chr12:54785074..54785122,-!p2@ZNF385A!0.90!10.97!ZNF385A;;chr12:66218003..66218018,+!p9@HMGA2!0.90!8.61!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.89!6.72!POU4F1;;chr2:176972000..176972025,+!p4@HOXD11!0.89!6.72!HOXD11;;chr2:122042770..122042785,-!p1@TFCP2L1!0.88!6.61!TFCP2L1;;chr17:8027418..8027432,-!p1@HES7!0.88!6.61!HES7;;chr7:27153454..27153469,-!p2@HOXA3!0.88!6.61!HOXA3;;chr9:100615499..100615519,+!p1@FOXE1!0.88!6.61!FOXE1;;chr17:70117153..70117174,+!p1@SOX9!0.87!69.60!SOX9;;chr12:66218183..66218209,+!p4@HMGA2!0.87!12.62!HMGA2;;chr1:247171347..247171366,-!p2@ZNF695!0.87!12.27!ZNF695;;chr12:66218378..66218401,+!p6@HMGA2!0.87!10.15!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!0.87!7.90!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.87!6.37!EN2;;chr6:10415484..10415508,-!p3@TFAP2A!0.86!6.25!TFAP2A;;chr8:128747757..128747800,+!p7@MYC!0.85!8.49!MYC;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.13!HOXA7;;chr13:100623375..100623425,-!p1@ZIC5!0.85!6.02!ZIC5;;chr2:71127699..71127744,+!p1@VAX2!0.84!12.74!VAX2;;chr2:63277948..63277974,+!p1@OTX1!0.83!5.78!OTX1;;chr17:46703687..46703740,-!p1@HOXB9!0.83!5.78!HOXB9;;chr20:42295713..42295738,+!p2@MYBL2!0.82!35.98!MYBL2;;chr6:126240356..126240379,+!p7@NCOA7!0.82!6.96!NCOA7;;chr3:138665969..138665993,-!p2@FOXL2!0.82!5.66!FOXL2;;chr3:189507460..189507471,+!p3@TP63!0.82!5.54!TP63;;chrX:24169518..24169522,+!p8@ZFX!0.82!5.54!ZFX;;chr1:209979449..209979460,-!p3@IRF6!0.82!5.54!IRF6;;chr21:38071430..38071456,+!p1@SIM2!0.82!5.54!SIM2;;chr19:47523058..47523114,+!p1@NPAS1!0.81!5.43!NPAS1;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.44!NFE2L2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.80!12.15!SOHLH2;;chr6:1389789..1389821,+!p1@FOXF2!0.80!7.55!FOXF2;;chr1:50889103..50889145,-!p1@DMRTA2!0.80!5.31!DMRTA2;;chr1:6479968..6479986,-!p1@HES2!0.80!5.31!HES2;;chr9:129376201..129376225,+!p1@LMX1B!0.80!5.31!LMX1B;;chr8:102504690..102504704,+!p3@GRHL2!0.79!5.19!GRHL2;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.19!FOXL2;;chr2:60780753..60780800,-!p1@BCL11A!0.78!27.02!BCL11A;;chr5:2751785..2751808,-!p2@IRX2!0.78!5.07!IRX2;;chr11:47236584..47236679,+!p1@DDB2!0.77!59.10!DDB2;;chr11:8102749..8102769,+!p2@TUB!0.77!9.91!TUB;;chr12:66218573..662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+|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0101120,FF:0102027
 |fonse_cell_line_closure=FF:0101120,FF:0102027
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10550-107I1
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102211
+|is_a=EFO:0002091;;FF:0000210;;FF:0102211
+|is_obsolete=
+|library_id=CNhs11287
+|library_id_phase_based=2:CNhs11287
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10550
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10550
 |name=oral squamous cell carcinoma cell line:HO-1-u-1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11287,LSID759,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=107
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=50.9383
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=RCB2102
 |sample_cell_line=HO-1-u-1
@@ Line 77: / Line 99: @@
 |sample_tissue=gum
 |top_motifs=VSX1,2:1.97229230821;ZEB1:1.70159751039;bHLH_family:1.59834580886;SNAI1..3:1.52834629764;ADNP_IRX_SIX_ZHX:1.27741057731;SP1:1.16379471212;NFY{A,B,C}:1.15100049767;E2F1..5:1.13761060669;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.11615612703;HSF1,2:0.990953606257;ATF4:0.970596174297;FOXQ1:0.961019148123;TFDP1:0.882305917064;CDX1,2,4:0.841467738632;PAX8:0.838739054656;RBPJ:0.819374133566;NANOG:0.756203913225;ELK1,4_GABP{A,B1}:0.735219013649;BREu{core}:0.729591423287;TP53:0.726291562429;NRF1:0.703427877638;POU2F1..3:0.701284778336;PITX1..3:0.698733293542;SOX2:0.69580937833;TBX4,5:0.694172690708;NR6A1:0.691176208718;CDC5L:0.581964216182;NKX2-3_NKX2-5:0.577457251715;LHX3,4:0.569896101612;SOX17:0.569372606181;ZNF143:0.565691251137;PBX1:0.550945281083;NR5A1,2:0.547173923182;PAX1,9:0.544437055032;STAT5{A,B}:0.508901735796;POU1F1:0.498852979435;TEF:0.478622398671;FOXP1:0.469753938159;ZFP161:0.467553831508;LMO2:0.465091088071;NKX3-2:0.445785783462;ZBTB16:0.443687969169;MYOD1:0.421931592006;AHR_ARNT_ARNT2:0.42181116711;ZNF384:0.420735316752;NKX2-2,8:0.419622507436;FOXA2:0.413032356195;FOXM1:0.409153988635;TBP:0.401487541147;FOX{I1,J2}:0.401362514493;HOX{A6,A7,B6,B7}:0.398455371121;FOX{F1,F2,J1}:0.389469789152;ONECUT1,2:0.380310926256;NFE2:0.372009789529;HOX{A4,D4}:0.331231084993;MYB:0.318361065251;CEBPA,B_DDIT3:0.30712635314;PAX4:0.298540255675;ESRRA:0.282383213145;ATF5_CREB3:0.280394194675;OCT4_SOX2{dimer}:0.266291685525;PRRX1,2:0.218250320087;POU5F1:0.217249256559;ZNF148:0.207379531175;NKX6-1,2:0.182722733636;HOX{A5,B5}:0.182644741793;FOXL1:0.172122513079;FOS_FOS{B,L1}_JUN{B,D}:0.14651094621;FOSL2:0.128329470398;FOXN1:0.103227305555;HNF1A:0.092986889651;XCPE1{core}:0.0729953679186;HIC1:0.0699631144989;CRX:0.0637579341751;HIF1A:0.0613455469397;RFX2..5_RFXANK_RFXAP:0.0240805387603;CREB1:0.0205070805529;LEF1_TCF7_TCF7L1,2:0.0159218789195;T:-0.00528874182479;CUX2:-0.023678757533;GATA6:-0.0257408433314;HAND1,2:-0.0274176945559;YY1:-0.0432579030912;GFI1B:-0.0436477473858;AIRE:-0.0478355180102;NFIX:-0.0531121545598;ATF2:-0.0785873386181;HES1:-0.0793254923594;NFKB1_REL_RELA:-0.0996713059684;NKX2-1,4:-0.113385617676;POU6F1:-0.115120490178;TEAD1:-0.1171294882;TOPORS:-0.121693574917;EN1,2:-0.124202985322;TFAP2B:-0.124731508529;SOX{8,9,10}:-0.13176541625;NFE2L2:-0.137092862983;MEF2{A,B,C,D}:-0.14087591809;ALX1:-0.141687615838;SOX5:-0.148724844636;HLF:-0.150080448756;GFI1:-0.162509112787;FOX{D1,D2}:-0.169970127638;PDX1:-0.18548574253;BACH2:-0.191327375502;IRF7:-0.193635777682;AR:-0.222464122981;MED-1{core}:-0.249234696364;JUN:-0.251467581052;RFX1:-0.274260354264;PATZ1:-0.279969680083;HNF4A_NR2F1,2:-0.298834798475;ARID5B:-0.30402240268;PAX2:-0.311106352665;REST:-0.328878503063;GTF2A1,2:-0.336979189152;DBP:-0.34312612241;BPTF:-0.35861335307;NFIL3:-0.358735665731;IKZF2:-0.362534312205;RORA:-0.362914995509;TLX1..3_NFIC{dimer}:-0.381674787414;HOXA9_MEIS1:-0.389672031843;PAX3,7:-0.408400099959;MYBL2:-0.412887650604;HMGA1,2:-0.421844651183;SPIB:-0.472255000744;MAZ:-0.47651549043;XBP1:-0.483842491567;FOXD3:-0.485303914507;TAL1_TCF{3,4,12}:-0.491766092591;IKZF1:-0.501678565833;FOXP3:-0.503723142606;ATF6:-0.513685451011;ZIC1..3:-0.535785278092;DMAP1_NCOR{1,2}_SMARC:-0.558301579109;ELF1,2,4:-0.567957195596;RUNX1..3:-0.576513568686;PAX6:-0.601147119843;EGR1..3:-0.602144583604;UFEwm:-0.615081466712;ETS1,2:-0.61961639095;EVI1:-0.634448305669;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.639612512309;MTE{core}:-0.649907523304;GTF2I:-0.676192869474;ZNF238:-0.689509927007;KLF4:-0.704011161348;ZNF423:-0.720745299973;TFAP2{A,C}:-0.772890597116;EBF1:-0.781930016757;MTF1:-0.785825089362;STAT2,4,6:-0.790909231716;PPARG:-0.799572702334;NKX3-1:-0.806275816697;SPI1:-0.811239152203;POU3F1..4:-0.818853598557;TFCP2:-0.8241965023;NR1H4:-0.824767474329;ALX4:-0.835632962874;FOXO1,3,4:-0.8367269158;TGIF1:-0.838098928579;NHLH1,2:-0.845872687528;ESR1:-0.846001117019;RREB1:-0.857167157428;STAT1,3:-0.881883892917;EP300:-0.894079306384;SREBF1,2:-0.898486865806;HBP1_HMGB_SSRP1_UBTF:-0.902284087914;MAFB:-0.913575719825;PRDM1:-0.92890774872;GZF1:-1.00270641218;SRF:-1.00301266843;RXR{A,B,G}:-1.00546849586;GATA4:-1.04432027684;IRF1,2:-1.10830460773;NFATC1..3:-1.11958551263;PAX5:-1.12768149914;ZBTB6:-1.14384925923;NR3C1:-1.15032588894;MYFfamily:-1.19754347953;TFAP4:-1.25749200419;HMX1:-1.26794244733;MZF1:-1.31306067195;GLI1..3:-1.32404541114;GCM1,2:-1.37272488571;NFE2L1:-1.40854211249;SMAD1..7,9:-1.69496201693;SPZ1:-1.70819120427;RXRA_VDR{dimer}:-1.84088422594;NANOG{mouse}:-1.89309688382;TLX2:-2.15168987734
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10550-107I1;search_select_hide=table117:FF:10550-107I1
 }}

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FF:10550-107I1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0