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{{f5samples
{{f5samples
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|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005598
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|accession_numbers_RNASeq=RNA-Seq;DRX057143;DRR062902;DRZ007978
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0104204,FF:0104205
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|
|
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 35: Line 42:
|fonse_treatment_closure=
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|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg38.nobarcode.ctss.bed.gz
|id=FF:10805-111A4
|id=FF:10805-111A4
|is_a=DOID:305;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0104205
|is_a=EFO:0002091;;FF:0000210;;FF:0104205
|is_obsolete=
|library_id=CNhs11889
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|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10805
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10805
|name=anaplastic squamous cell carcinoma cell line:RPMI 2650
|name=anaplastic squamous cell carcinoma cell line:RPMI 2650
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 61:
|profile_cagescan=,,,
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Line 56: Line 78:
|rna_tube_id=111A4
|rna_tube_id=111A4
|rna_weight_ug=18.69264
|rna_weight_ug=18.69264
|rnaseq_library_id=RDhi10086
|sample_age=unknown
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=jcrb9058
|sample_cell_catalog=jcrb9058
|sample_cell_line=RPMI 2650
|sample_cell_line=RPMI 2650
Line 69: Line 93:
|sample_ethnicity=unknown
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|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.33655955020131e-282!GO:0043226;organelle;5.44378771210141e-252!GO:0043229;intracellular organelle;1.28642819857302e-251!GO:0043231;intracellular membrane-bound organelle;4.46479026738888e-251!GO:0043227;membrane-bound organelle;5.81107152025484e-251!GO:0044422;organelle part;1.77941928830586e-157!GO:0044446;intracellular organelle part;3.73788056455403e-156!GO:0005737;cytoplasm;1.2754936860288e-150!GO:0005634;nucleus;2.19564433215566e-135!GO:0044444;cytoplasmic part;2.75903015594588e-108!GO:0044238;primary metabolic process;2.16270209412017e-106!GO:0044237;cellular metabolic process;2.9597862354992e-106!GO:0043170;macromolecule metabolic process;1.91433702207206e-104!GO:0032991;macromolecular complex;1.57182265138754e-100!GO:0044428;nuclear part;3.3831736019658e-87!GO:0043233;organelle lumen;2.74648675344333e-83!GO:0031974;membrane-enclosed lumen;2.74648675344333e-83!GO:0030529;ribonucleoprotein complex;5.45610484846047e-82!GO:0003723;RNA binding;3.59468095320686e-80!GO:0043283;biopolymer metabolic process;7.93651677654879e-79!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.96551685281849e-77!GO:0010467;gene expression;8.76991368848504e-71!GO:0005739;mitochondrion;5.93387140353321e-65!GO:0005515;protein binding;2.23732636377829e-58!GO:0006396;RNA processing;1.64836762088927e-55!GO:0003676;nucleic acid binding;1.56252702795238e-54!GO:0031981;nuclear lumen;2.79243126505642e-54!GO:0043234;protein complex;7.14350519831288e-52!GO:0006259;DNA metabolic process;1.23381969603082e-50!GO:0016043;cellular component organization and biogenesis;4.5456123152233e-50!GO:0016071;mRNA metabolic process;6.20991410786396e-47!GO:0044429;mitochondrial part;9.55655821317596e-47!GO:0005840;ribosome;2.66233613383686e-45!GO:0016070;RNA metabolic process;1.33670937877246e-44!GO:0006996;organelle organization and biogenesis;3.011285583164e-44!GO:0031967;organelle envelope;2.7417937701463e-42!GO:0031975;envelope;5.36477674517436e-42!GO:0008380;RNA splicing;7.09819358286372e-41!GO:0006412;translation;1.57744904757797e-40!GO:0043228;non-membrane-bound organelle;2.18467079619977e-40!GO:0043232;intracellular non-membrane-bound organelle;2.18467079619977e-40!GO:0033036;macromolecule localization;2.18827736426544e-39!GO:0031090;organelle membrane;2.9117289299661e-39!GO:0006397;mRNA processing;3.43346295984463e-39!GO:0015031;protein transport;3.91198171323769e-39!GO:0003735;structural constituent of ribosome;7.02745418053378e-39!GO:0046907;intracellular transport;1.14896529364998e-38!GO:0007049;cell cycle;6.75791216137716e-37!GO:0019538;protein metabolic process;6.93595241994034e-36!GO:0033279;ribosomal subunit;4.15091124098498e-35!GO:0008104;protein localization;5.18560828480669e-35!GO:0005654;nucleoplasm;5.69132219087607e-35!GO:0065003;macromolecular complex assembly;1.58769335946653e-34!GO:0045184;establishment of protein localization;4.32035392005105e-34!GO:0044260;cellular macromolecule metabolic process;1.68695464357243e-32!GO:0044267;cellular protein metabolic process;2.70228835450966e-32!GO:0005829;cytosol;7.93470099833612e-31!GO:0044249;cellular biosynthetic process;9.12102221788631e-31!GO:0022607;cellular component assembly;1.58086228191693e-30!GO:0019866;organelle inner membrane;2.45896152600042e-30!GO:0005740;mitochondrial envelope;3.77156270755932e-30!GO:0009058;biosynthetic process;4.74788296597087e-30!GO:0006886;intracellular protein transport;2.88198738397541e-29!GO:0000166;nucleotide binding;2.88198738397541e-29!GO:0009059;macromolecule biosynthetic process;3.46330559021163e-29!GO:0044451;nucleoplasm part;1.04698032665862e-28!GO:0031966;mitochondrial membrane;1.48176518369623e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.60465284438222e-28!GO:0022402;cell cycle process;9.64043203626853e-28!GO:0005743;mitochondrial inner membrane;1.69540318662394e-27!GO:0005681;spliceosome;2.0683647797068e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.13685935877641e-27!GO:0006974;response to DNA damage stimulus;1.25463290060015e-26!GO:0051276;chromosome organization and biogenesis;1.77435325950137e-26!GO:0005694;chromosome;1.05746954824874e-25!GO:0051649;establishment of cellular localization;2.45732094506611e-25!GO:0051641;cellular localization;5.37409442304165e-25!GO:0006281;DNA repair;4.11013996227957e-24!GO:0000278;mitotic cell cycle;2.27440260189169e-23!GO:0044427;chromosomal part;3.56768862556755e-23!GO:0044445;cytosolic part;3.64938331067418e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;1.20832419623144e-21!GO:0006512;ubiquitin cycle;1.51192167565524e-21!GO:0044455;mitochondrial membrane part;3.93079708815881e-21!GO:0016874;ligase activity;8.61600492556548e-21!GO:0031980;mitochondrial lumen;9.54049409924847e-21!GO:0005759;mitochondrial matrix;9.54049409924847e-21!GO:0006323;DNA packaging;9.9503706070903e-21!GO:0051301;cell division;1.59574788452908e-20!GO:0006119;oxidative phosphorylation;1.80155584898889e-20!GO:0016462;pyrophosphatase activity;1.55160498903925e-19!GO:0032553;ribonucleotide binding;1.87874804309815e-19!GO:0032555;purine ribonucleotide binding;1.87874804309815e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.49814361036516e-19!GO:0006260;DNA replication;2.64164872632719e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.69871813409015e-19!GO:0022403;cell cycle phase;4.17888690577983e-19!GO:0017076;purine nucleotide binding;1.13763759180024e-18!GO:0000087;M phase of mitotic cell cycle;1.1841056320899e-18!GO:0009719;response to endogenous stimulus;1.2639203143826e-18!GO:0005730;nucleolus;1.37829486935282e-18!GO:0017111;nucleoside-triphosphatase activity;1.77622668303811e-18!GO:0015935;small ribosomal subunit;2.51912985798471e-18!GO:0015630;microtubule cytoskeleton;3.08276759112659e-18!GO:0007067;mitosis;3.55213214752412e-18!GO:0005524;ATP binding;3.62805577953622e-18!GO:0032559;adenyl ribonucleotide binding;5.46331292892075e-18!GO:0015934;large ribosomal subunit;6.33394680049702e-18!GO:0006457;protein folding;1.13660174484296e-17!GO:0044265;cellular macromolecule catabolic process;1.35315404392701e-17!GO:0005746;mitochondrial respiratory chain;2.56736739484365e-17!GO:0030554;adenyl nucleotide binding;5.77116472279897e-17!GO:0022618;protein-RNA complex assembly;2.25971192795345e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.99676505188758e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.86952948461303e-16!GO:0000279;M phase;4.3847328686504e-16!GO:0006605;protein targeting;4.76757082544771e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.99046595925469e-16!GO:0019941;modification-dependent protein catabolic process;6.34887941438025e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.34887941438025e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.80533758337139e-16!GO:0003954;NADH dehydrogenase activity;7.80533758337139e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.80533758337139e-16!GO:0044257;cellular protein catabolic process;9.28318983185871e-16!GO:0016568;chromatin modification;1.68965624359303e-15!GO:0044453;nuclear membrane part;2.23129223389827e-15!GO:0031965;nuclear membrane;2.6955932484485e-15!GO:0043285;biopolymer catabolic process;3.44947273053642e-15!GO:0016604;nuclear body;7.79812605194347e-15!GO:0004386;helicase activity;8.29832273916121e-15!GO:0050794;regulation of cellular process;1.17334213998324e-14!GO:0000785;chromatin;1.58424938728101e-14!GO:0019222;regulation of metabolic process;2.06407856950008e-14!GO:0008135;translation factor activity, nucleic acid binding;2.89007240597725e-14!GO:0016887;ATPase activity;3.10928414790767e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.3445739973967e-14!GO:0000375;RNA splicing, via transesterification reactions;3.3445739973967e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.3445739973967e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.03575600264494e-14!GO:0042773;ATP synthesis coupled electron transport;4.03575600264494e-14!GO:0005643;nuclear pore;5.38417867673397e-14!GO:0009057;macromolecule catabolic process;5.57185764873507e-14!GO:0048770;pigment granule;6.09491306808051e-14!GO:0042470;melanosome;6.09491306808051e-14!GO:0006333;chromatin assembly or disassembly;6.42040849908223e-14!GO:0006350;transcription;6.46794154696949e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.80349297224476e-14!GO:0045271;respiratory chain complex I;7.80349297224476e-14!GO:0005747;mitochondrial respiratory chain complex I;7.80349297224476e-14!GO:0042623;ATPase activity, coupled;7.90070967873702e-14!GO:0051726;regulation of cell cycle;9.67563356136614e-14!GO:0065004;protein-DNA complex assembly;1.37271825470848e-13!GO:0000074;regulation of progression through cell cycle;1.42294279623795e-13!GO:0008134;transcription factor binding;1.4691204764664e-13!GO:0043412;biopolymer modification;1.61474885352642e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.90339979842352e-13!GO:0051082;unfolded protein binding;2.01358705972943e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.24528624966831e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.56994187059436e-13!GO:0012505;endomembrane system;4.65314634891228e-13!GO:0005635;nuclear envelope;4.65314634891228e-13!GO:0016607;nuclear speck;6.37848870095581e-13!GO:0050657;nucleic acid transport;6.59276691192458e-13!GO:0051236;establishment of RNA localization;6.59276691192458e-13!GO:0050658;RNA transport;6.59276691192458e-13!GO:0006403;RNA localization;7.98671189909541e-13!GO:0008026;ATP-dependent helicase activity;1.05718547074275e-12!GO:0031323;regulation of cellular metabolic process;1.08616700266631e-12!GO:0044248;cellular catabolic process;1.10607874205401e-12!GO:0048193;Golgi vesicle transport;1.78836486510294e-12!GO:0042254;ribosome biogenesis and assembly;1.7914155151675e-12!GO:0008565;protein transporter activity;1.99117798884095e-12!GO:0030163;protein catabolic process;3.08468576271307e-12!GO:0000502;proteasome complex (sensu Eukaryota);3.50905868283601e-12!GO:0005761;mitochondrial ribosome;3.7927011220343e-12!GO:0000313;organellar ribosome;3.7927011220343e-12!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.75958726560751e-12!GO:0006913;nucleocytoplasmic transport;7.15864591750019e-12!GO:0065002;intracellular protein transport across a membrane;8.38769329078745e-12!GO:0006399;tRNA metabolic process;8.54099234033058e-12!GO:0032774;RNA biosynthetic process;8.6242970046417e-12!GO:0006351;transcription, DNA-dependent;1.17020477289197e-11!GO:0010468;regulation of gene expression;1.33753926263948e-11!GO:0051169;nuclear transport;1.56640320042772e-11!GO:0005783;endoplasmic reticulum;1.84216825949705e-11!GO:0006464;protein modification process;1.8472272190051e-11!GO:0006366;transcription from RNA polymerase II promoter;1.87067144214481e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.02206580153363e-11!GO:0046930;pore complex;4.24568348193887e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.27562014377183e-11!GO:0051028;mRNA transport;5.48068364787101e-11!GO:0043687;post-translational protein modification;7.16641981204033e-11!GO:0005813;centrosome;9.16641946050907e-11!GO:0003743;translation initiation factor activity;9.67918825672069e-11!GO:0005815;microtubule organizing center;1.20975170430659e-10!GO:0003677;DNA binding;1.69864916049684e-10!GO:0050789;regulation of biological process;1.85841350300637e-10!GO:0051186;cofactor metabolic process;2.3487041594596e-10!GO:0008639;small protein conjugating enzyme activity;3.79405393616871e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.69326881232294e-10!GO:0004842;ubiquitin-protein ligase activity;5.19471539484114e-10!GO:0045449;regulation of transcription;6.30508709721473e-10!GO:0005819;spindle;7.41620939883582e-10!GO:0006413;translational initiation;8.69631911058025e-10!GO:0006446;regulation of translational initiation;1.03212036152476e-09!GO:0044432;endoplasmic reticulum part;1.14451802009281e-09!GO:0045333;cellular respiration;1.17251039097671e-09!GO:0006261;DNA-dependent DNA replication;1.57465994062604e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.91439818038108e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.91439818038108e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.91439818038108e-09!GO:0019787;small conjugating protein ligase activity;2.0000599625711e-09!GO:0016881;acid-amino acid ligase activity;2.10006844080201e-09!GO:0006461;protein complex assembly;3.88703651876154e-09!GO:0006355;regulation of transcription, DNA-dependent;4.03567898379105e-09!GO:0043038;amino acid activation;4.1492731074433e-09!GO:0006418;tRNA aminoacylation for protein translation;4.1492731074433e-09!GO:0043039;tRNA aminoacylation;4.1492731074433e-09!GO:0006334;nucleosome assembly;4.29558454913743e-09!GO:0003712;transcription cofactor activity;4.30996471214651e-09!GO:0009060;aerobic respiration;4.39333644244633e-09!GO:0000775;chromosome, pericentric region;4.79170145485958e-09!GO:0031497;chromatin assembly;5.83638169781452e-09!GO:0005667;transcription factor complex;6.11622588333343e-09!GO:0043623;cellular protein complex assembly;6.92940433757747e-09!GO:0017038;protein import;7.00376115562828e-09!GO:0005794;Golgi apparatus;8.38116470282998e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.0306340865721e-08!GO:0006364;rRNA processing;1.3295479299076e-08!GO:0009055;electron carrier activity;1.54711041957443e-08!GO:0032446;protein modification by small protein conjugation;1.7252215834577e-08!GO:0006732;coenzyme metabolic process;2.2502477645051e-08!GO:0006163;purine nucleotide metabolic process;3.18482024858783e-08!GO:0005874;microtubule;3.20019681159584e-08!GO:0043566;structure-specific DNA binding;3.39599037878966e-08!GO:0016072;rRNA metabolic process;3.58567379988915e-08!GO:0016567;protein ubiquitination;3.75450918686177e-08!GO:0009259;ribonucleotide metabolic process;4.50019757977034e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.07003894441201e-08!GO:0016192;vesicle-mediated transport;7.09995082399817e-08!GO:0003697;single-stranded DNA binding;1.45818212153235e-07!GO:0006164;purine nucleotide biosynthetic process;1.45845721136321e-07!GO:0006099;tricarboxylic acid cycle;1.45979009178999e-07!GO:0046356;acetyl-CoA catabolic process;1.45979009178999e-07!GO:0009150;purine ribonucleotide metabolic process;2.27135856424596e-07!GO:0007005;mitochondrion organization and biogenesis;3.2347387755316e-07!GO:0000151;ubiquitin ligase complex;3.24912562599377e-07!GO:0006084;acetyl-CoA metabolic process;3.98196891872476e-07!GO:0008094;DNA-dependent ATPase activity;4.26598779656752e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.55345522704445e-07!GO:0051329;interphase of mitotic cell cycle;5.51196165642569e-07!GO:0045786;negative regulation of progression through cell cycle;5.51636848878278e-07!GO:0009260;ribonucleotide biosynthetic process;6.25009493884473e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.81762295993166e-07!GO:0003682;chromatin binding;7.05904589122028e-07!GO:0000245;spliceosome assembly;7.47780558047568e-07!GO:0005789;endoplasmic reticulum membrane;8.73925046801389e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.02279571210187e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.04917244044655e-06!GO:0016779;nucleotidyltransferase activity;1.13824081620329e-06!GO:0007051;spindle organization and biogenesis;1.15356155216437e-06!GO:0007017;microtubule-based process;1.26602030158075e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.33262984757755e-06!GO:0051325;interphase;1.55665022512712e-06!GO:0009109;coenzyme catabolic process;1.88974502973293e-06!GO:0009141;nucleoside triphosphate metabolic process;1.91079609236517e-06!GO:0009056;catabolic process;1.95007830495492e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.1158762736831e-06!GO:0003684;damaged DNA binding;2.37685703068251e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.00765967562221e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.44858078516141e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.91959615908015e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.91959615908015e-06!GO:0006606;protein import into nucleus;3.93178377196625e-06!GO:0015986;ATP synthesis coupled proton transport;3.94791208564963e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.94791208564963e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.5285692568142e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.5285692568142e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.46058873594004e-06!GO:0003724;RNA helicase activity;5.83314838084238e-06!GO:0051170;nuclear import;6.09115883689319e-06!GO:0051427;hormone receptor binding;6.44727403301471e-06!GO:0051188;cofactor biosynthetic process;6.58394865216653e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.32269995365688e-06!GO:0005657;replication fork;8.50632266420992e-06!GO:0003729;mRNA binding;8.56494705266224e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.56494705266224e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.56494705266224e-06!GO:0051168;nuclear export;9.19470538903233e-06!GO:0048523;negative regulation of cellular process;1.02776753975418e-05!GO:0006793;phosphorus metabolic process;1.05760066892031e-05!GO:0006796;phosphate metabolic process;1.05760066892031e-05!GO:0051187;cofactor catabolic process;1.15519808120455e-05!GO:0016564;transcription repressor activity;1.33322729842833e-05!GO:0035257;nuclear hormone receptor binding;1.37387931940211e-05!GO:0005793;ER-Golgi intermediate compartment;1.41097916098322e-05!GO:0000075;cell cycle checkpoint;1.41097916098322e-05!GO:0016740;transferase activity;1.44954070359212e-05!GO:0046034;ATP metabolic process;1.47264364019071e-05!GO:0045259;proton-transporting ATP synthase complex;1.54439870003311e-05!GO:0003899;DNA-directed RNA polymerase activity;1.66207436864482e-05!GO:0048475;coated membrane;1.91643615829368e-05!GO:0030117;membrane coat;1.91643615829368e-05!GO:0006613;cotranslational protein targeting to membrane;1.94008842620346e-05!GO:0005768;endosome;1.95280844892566e-05!GO:0016363;nuclear matrix;2.13663415567359e-05!GO:0000776;kinetochore;2.25621935614801e-05!GO:0008654;phospholipid biosynthetic process;2.36546004113914e-05!GO:0006754;ATP biosynthetic process;2.38197894075538e-05!GO:0006753;nucleoside phosphate metabolic process;2.38197894075538e-05!GO:0006338;chromatin remodeling;2.46562621549179e-05!GO:0007010;cytoskeleton organization and biogenesis;2.51494814029356e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.6885230454451e-05!GO:0003678;DNA helicase activity;2.98026622671148e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.33766945405448e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.38537108352766e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.47702052484459e-05!GO:0065007;biological regulation;3.51942381678775e-05!GO:0006302;double-strand break repair;3.76256565161924e-05!GO:0031324;negative regulation of cellular metabolic process;4.20879260441225e-05!GO:0030120;vesicle coat;4.29796552923975e-05!GO:0030662;coated vesicle membrane;4.29796552923975e-05!GO:0006402;mRNA catabolic process;4.84664645835177e-05!GO:0006352;transcription initiation;5.35473173704359e-05!GO:0004674;protein serine/threonine kinase activity;5.88205804171462e-05!GO:0016310;phosphorylation;6.73507603762075e-05!GO:0019829;cation-transporting ATPase activity;7.43818677031748e-05!GO:0048471;perinuclear region of cytoplasm;7.58098125300739e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.60804498231282e-05!GO:0009117;nucleotide metabolic process;7.67532246542445e-05!GO:0051052;regulation of DNA metabolic process;8.68397728640995e-05!GO:0006752;group transfer coenzyme metabolic process;8.68397728640995e-05!GO:0000059;protein import into nucleus, docking;8.81524449848338e-05!GO:0003713;transcription coactivator activity;8.85551277738307e-05!GO:0045454;cell redox homeostasis;9.02164212849894e-05!GO:0005798;Golgi-associated vesicle;9.58193875472408e-05!GO:0003690;double-stranded DNA binding;0.000100027736088907!GO:0009108;coenzyme biosynthetic process;0.000116384916195828!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000122130134131006!GO:0006401;RNA catabolic process;0.000131109463082476!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147200867918732!GO:0005762;mitochondrial large ribosomal subunit;0.000150923723350237!GO:0000315;organellar large ribosomal subunit;0.000150923723350237!GO:0008270;zinc ion binding;0.000151122219916322!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000152855150264666!GO:0005839;proteasome core complex (sensu Eukaryota);0.000156246219145034!GO:0016859;cis-trans isomerase activity;0.000165975003563755!GO:0015631;tubulin binding;0.000167639623080221!GO:0006839;mitochondrial transport;0.000172060555048318!GO:0005876;spindle microtubule;0.000196601558756932!GO:0003714;transcription corepressor activity;0.000212046188440447!GO:0005788;endoplasmic reticulum lumen;0.000214416245685541!GO:0048519;negative regulation of biological process;0.000230618114729693!GO:0004576;oligosaccharyl transferase activity;0.000233361569616621!GO:0012501;programmed cell death;0.000246045881470791!GO:0006383;transcription from RNA polymerase III promoter;0.00024631174999773!GO:0016563;transcription activator activity;0.000256784917282092!GO:0006612;protein targeting to membrane;0.000258220877670357!GO:0016853;isomerase activity;0.000273068952990842!GO:0006915;apoptosis;0.000274749372619385!GO:0008186;RNA-dependent ATPase activity;0.000294937655603031!GO:0000314;organellar small ribosomal subunit;0.000297120509675176!GO:0005763;mitochondrial small ribosomal subunit;0.000297120509675176!GO:0016481;negative regulation of transcription;0.000311464642391936!GO:0008033;tRNA processing;0.000325069841558938!GO:0016741;transferase activity, transferring one-carbon groups;0.000333719708767491!GO:0007059;chromosome segregation;0.000334618305616783!GO:0031982;vesicle;0.000351485496767631!GO:0000792;heterochromatin;0.000354747741998602!GO:0004298;threonine endopeptidase activity;0.00038171975894908!GO:0006284;base-excision repair;0.00038456775338365!GO:0008250;oligosaccharyl transferase complex;0.000393479371844852!GO:0008168;methyltransferase activity;0.000404341906288142!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000411747822451521!GO:0006310;DNA recombination;0.000422303281538413!GO:0000786;nucleosome;0.000423589759519153!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00043446222304266!GO:0009892;negative regulation of metabolic process;0.000435801866612464!GO:0031988;membrane-bound vesicle;0.000459048831267131!GO:0040029;regulation of gene expression, epigenetic;0.000459421599450686!GO:0044440;endosomal part;0.000459421599450686!GO:0010008;endosome membrane;0.000459421599450686!GO:0005637;nuclear inner membrane;0.000470085781872844!GO:0031410;cytoplasmic vesicle;0.000481249749724687!GO:0005048;signal sequence binding;0.000481249749724687!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000518390382915791!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000522955377264097!GO:0016251;general RNA polymerase II transcription factor activity;0.000538428788949751!GO:0051252;regulation of RNA metabolic process;0.000541726518206799!GO:0016023;cytoplasmic membrane-bound vesicle;0.00059044194631008!GO:0030521;androgen receptor signaling pathway;0.000639511813948653!GO:0043021;ribonucleoprotein binding;0.000674609494866514!GO:0006405;RNA export from nucleus;0.000679249460185853!GO:0030880;RNA polymerase complex;0.000682678530368337!GO:0042393;histone binding;0.000698683447854428!GO:0032508;DNA duplex unwinding;0.00070890373602337!GO:0032392;DNA geometric change;0.00070890373602337!GO:0000922;spindle pole;0.000780372342831079!GO:0007052;mitotic spindle organization and biogenesis;0.000791311879416461!GO:0007006;mitochondrial membrane organization and biogenesis;0.0008635832234608!GO:0004004;ATP-dependent RNA helicase activity;0.000884166558854504!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000946882709405832!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000946882709405832!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000946882709405832!GO:0006626;protein targeting to mitochondrion;0.00095160916917387!GO:0032259;methylation;0.00100133336361646!GO:0051920;peroxiredoxin activity;0.00101133796556435!GO:0031124;mRNA 3'-end processing;0.00110328699794268!GO:0008219;cell death;0.00112997058546156!GO:0016265;death;0.00112997058546156!GO:0005769;early endosome;0.0011984468447483!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00120810341239166!GO:0030867;rough endoplasmic reticulum membrane;0.00135652258437409!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00150041369912894!GO:0000428;DNA-directed RNA polymerase complex;0.00150041369912894!GO:0046474;glycerophospholipid biosynthetic process;0.00156693108887913!GO:0043414;biopolymer methylation;0.0015904458106081!GO:0016787;hydrolase activity;0.00162993192156525!GO:0008276;protein methyltransferase activity;0.00164764412800266!GO:0043488;regulation of mRNA stability;0.00173534788373454!GO:0043487;regulation of RNA stability;0.00173534788373454!GO:0005684;U2-dependent spliceosome;0.00176629978758768!GO:0008022;protein C-terminus binding;0.00177253391427212!GO:0046489;phosphoinositide biosynthetic process;0.00178998661786239!GO:0043681;protein import into mitochondrion;0.00181387170982436!GO:0044431;Golgi apparatus part;0.00184832756563303!GO:0006414;translational elongation;0.0019269950748304!GO:0035258;steroid hormone receptor binding;0.00193531122098454!GO:0008139;nuclear localization sequence binding;0.00197230635702038!GO:0006289;nucleotide-excision repair;0.00206273205733678!GO:0019899;enzyme binding;0.00208245212080998!GO:0006268;DNA unwinding during replication;0.00210701908482008!GO:0044452;nucleolar part;0.00225451652270091!GO:0000209;protein polyubiquitination;0.0022719296193703!GO:0003924;GTPase activity;0.0023200193052814!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00233481308793604!GO:0051087;chaperone binding;0.00245561079633293!GO:0004003;ATP-dependent DNA helicase activity;0.00256310297044481!GO:0000082;G1/S transition of mitotic cell cycle;0.00257905359258064!GO:0005875;microtubule associated complex;0.00275248769336224!GO:0006611;protein export from nucleus;0.00278532699971967!GO:0004527;exonuclease activity;0.00286352269725301!GO:0006891;intra-Golgi vesicle-mediated transport;0.00295527794091592!GO:0032200;telomere organization and biogenesis;0.00297171480159413!GO:0000723;telomere maintenance;0.00297171480159413!GO:0048500;signal recognition particle;0.0029769346763265!GO:0031123;RNA 3'-end processing;0.00304110648678768!GO:0005525;GTP binding;0.00307161664830075!GO:0016569;covalent chromatin modification;0.00309378248726822!GO:0008017;microtubule binding;0.00347080507876527!GO:0004518;nuclease activity;0.00347118651526695!GO:0051246;regulation of protein metabolic process;0.00352941213590601!GO:0051287;NAD binding;0.00359459577999764!GO:0018196;peptidyl-asparagine modification;0.00376709691428654!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00376709691428654!GO:0016585;chromatin remodeling complex;0.00389316401371787!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0040310880909757!GO:0051789;response to protein stimulus;0.0040844245190602!GO:0006986;response to unfolded protein;0.0040844245190602!GO:0006595;polyamine metabolic process;0.00416523227162512!GO:0045892;negative regulation of transcription, DNA-dependent;0.00451674291456951!GO:0030663;COPI coated vesicle membrane;0.00464209402619083!GO:0030126;COPI vesicle coat;0.00464209402619083!GO:0008312;7S RNA binding;0.0047335088983063!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00484675798593741!GO:0046914;transition metal ion binding;0.00486026441097061!GO:0016584;nucleosome positioning;0.00489482906838069!GO:0005758;mitochondrial intermembrane space;0.00515747871446007!GO:0003702;RNA polymerase II transcription factor activity;0.00518318098966624!GO:0006378;mRNA polyadenylation;0.00534993263861991!GO:0006730;one-carbon compound metabolic process;0.00547184436380088!GO:0007093;mitotic cell cycle checkpoint;0.00549509328538992!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00565133953544797!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00587514202488931!GO:0030518;steroid hormone receptor signaling pathway;0.00595896285840446!GO:0030384;phosphoinositide metabolic process;0.00604777280999327!GO:0019843;rRNA binding;0.00608057532020146!GO:0006916;anti-apoptosis;0.00609144038135385!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00609144038135385!GO:0015002;heme-copper terminal oxidase activity;0.00609144038135385!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00609144038135385!GO:0004129;cytochrome-c oxidase activity;0.00609144038135385!GO:0000118;histone deacetylase complex;0.00628915511058189!GO:0003711;transcription elongation regulator activity;0.00630487345069868!GO:0031072;heat shock protein binding;0.00674337930541653!GO:0005741;mitochondrial outer membrane;0.00675433287566327!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00678625939111378!GO:0031252;leading edge;0.00693707611444896!GO:0007088;regulation of mitosis;0.00707818357021252!GO:0030137;COPI-coated vesicle;0.00714052224498353!GO:0033116;ER-Golgi intermediate compartment membrane;0.00716813190854954!GO:0051539;4 iron, 4 sulfur cluster binding;0.00717572361393926!GO:0000781;chromosome, telomeric region;0.00756445086053869!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00773961039571653!GO:0045047;protein targeting to ER;0.00773961039571653!GO:0050681;androgen receptor binding;0.00775900522942522!GO:0006091;generation of precursor metabolites and energy;0.00804064887534926!GO:0044450;microtubule organizing center part;0.00811402201913669!GO:0000049;tRNA binding;0.00811402201913669!GO:0000910;cytokinesis;0.00846352453967618!GO:0006275;regulation of DNA replication;0.00872491760808954!GO:0006270;DNA replication initiation;0.00875774246098717!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00879361279165131!GO:0003746;translation elongation factor activity;0.008994367120261!GO:0046467;membrane lipid biosynthetic process;0.0090784732456015!GO:0006520;amino acid metabolic process;0.0090784732456015!GO:0006144;purine base metabolic process;0.00920366265520652!GO:0031628;opioid receptor binding;0.00943284025583206!GO:0031852;mu-type opioid receptor binding;0.00943284025583206!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00946132999582312!GO:0015399;primary active transmembrane transporter activity;0.00946132999582312!GO:0005770;late endosome;0.00963784167212838!GO:0005773;vacuole;0.00970832808449516!GO:0005885;Arp2/3 protein complex;0.00997673069727756!GO:0008320;protein transmembrane transporter activity;0.0103729717254529!GO:0019752;carboxylic acid metabolic process;0.0105804844543757!GO:0007004;telomere maintenance via telomerase;0.0105804844543757!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0107012499637274!GO:0000123;histone acetyltransferase complex;0.0107251127470739!GO:0031968;organelle outer membrane;0.0107642159716639!GO:0019783;small conjugating protein-specific protease activity;0.0109969863631112!GO:0042981;regulation of apoptosis;0.0111382401714271!GO:0045045;secretory pathway;0.0112602653130498!GO:0016570;histone modification;0.0115252862654467!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.011733952617288!GO:0031970;organelle envelope lumen;0.0118357175704767!GO:0000725;recombinational repair;0.0121432513325366!GO:0000724;double-strand break repair via homologous recombination;0.0121432513325366!GO:0004177;aminopeptidase activity;0.0121520927838491!GO:0006376;mRNA splice site selection;0.0121520927838491!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0121520927838491!GO:0006082;organic acid metabolic process;0.0121632765087173!GO:0009165;nucleotide biosynthetic process;0.0122127340426299!GO:0005832;chaperonin-containing T-complex;0.0123185312510939!GO:0043067;regulation of programmed cell death;0.0123936556298454!GO:0045815;positive regulation of gene expression, epigenetic;0.0125103987267881!GO:0007018;microtubule-based movement;0.0126220763445575!GO:0043069;negative regulation of programmed cell death;0.0127470012122942!GO:0005791;rough endoplasmic reticulum;0.0130928538060811!GO:0009112;nucleobase metabolic process;0.0132823647211346!GO:0004843;ubiquitin-specific protease activity;0.0134198779510349!GO:0009081;branched chain family amino acid metabolic process;0.0135159117355548!GO:0006607;NLS-bearing substrate import into nucleus;0.0135159117355548!GO:0031570;DNA integrity checkpoint;0.0135159117355548!GO:0000339;RNA cap binding;0.013541114235858!GO:0008097;5S rRNA binding;0.013721118667161!GO:0006650;glycerophospholipid metabolic process;0.0137888777160263!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0138715363213656!GO:0043189;H4/H2A histone acetyltransferase complex;0.0140688207613739!GO:0043066;negative regulation of apoptosis;0.0143498477333565!GO:0035267;NuA4 histone acetyltransferase complex;0.0144108878677654!GO:0030134;ER to Golgi transport vesicle;0.0146526203763832!GO:0045893;positive regulation of transcription, DNA-dependent;0.0147757797133985!GO:0006505;GPI anchor metabolic process;0.0147757797133985!GO:0042054;histone methyltransferase activity;0.0147965437067582!GO:0048487;beta-tubulin binding;0.0148709655872138!GO:0019867;outer membrane;0.0149285654545905!GO:0043596;nuclear replication fork;0.0154459786119606!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0160227812770543!GO:0006984;ER-nuclear signaling pathway;0.0161447924284427!GO:0009303;rRNA transcription;0.0162174001379438!GO:0006497;protein amino acid lipidation;0.0164152101142578!GO:0046128;purine ribonucleoside metabolic process;0.0164265222544387!GO:0042278;purine nucleoside metabolic process;0.0164265222544387!GO:0006541;glutamine metabolic process;0.0165358234166966!GO:0006220;pyrimidine nucleotide metabolic process;0.0168074004826331!GO:0000323;lytic vacuole;0.0168437915606711!GO:0005764;lysosome;0.0168437915606711!GO:0016197;endosome transport;0.0168437915606711!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0169081693747741!GO:0004221;ubiquitin thiolesterase activity;0.017055782263012!GO:0065009;regulation of a molecular function;0.0171674107951236!GO:0007050;cell cycle arrest;0.0178935318895027!GO:0032561;guanyl ribonucleotide binding;0.0179605775214171!GO:0019001;guanyl nucleotide binding;0.0179605775214171!GO:0050662;coenzyme binding;0.0183457046227891!GO:0000819;sister chromatid segregation;0.0186015663253207!GO:0005938;cell cortex;0.0186791701213574!GO:0005869;dynactin complex;0.0187968273144665!GO:0000096;sulfur amino acid metabolic process;0.0188383852697238!GO:0043631;RNA polyadenylation;0.0188790797558503!GO:0043130;ubiquitin binding;0.0189814569507224!GO:0032182;small conjugating protein binding;0.0189814569507224!GO:0006301;postreplication repair;0.0190592783759011!GO:0044430;cytoskeletal part;0.0194429464212454!GO:0030118;clathrin coat;0.0194429464212454!GO:0051540;metal cluster binding;0.0197383038570057!GO:0051536;iron-sulfur cluster binding;0.0197383038570057!GO:0005868;cytoplasmic dynein complex;0.0200522697370949!GO:0016272;prefoldin complex;0.0200663122545934!GO:0006506;GPI anchor biosynthetic process;0.020083054724683!GO:0042158;lipoprotein biosynthetic process;0.020083054724683!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0202610244178402!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0202610244178402!GO:0030132;clathrin coat of coated pit;0.0210935809510992!GO:0006406;mRNA export from nucleus;0.0214221614556149!GO:0043284;biopolymer biosynthetic process;0.0215892159127196!GO:0000139;Golgi membrane;0.0217404586845603!GO:0046483;heterocycle metabolic process;0.0217570393317682!GO:0009083;branched chain family amino acid catabolic process;0.0218483411835593!GO:0031625;ubiquitin protein ligase binding;0.0220049815338114!GO:0005669;transcription factor TFIID complex;0.0220076952294868!GO:0030027;lamellipodium;0.0222125100351432!GO:0030133;transport vesicle;0.022287715791318!GO:0000070;mitotic sister chromatid segregation;0.0223658795229789!GO:0008143;poly(A) binding;0.0225693222266955!GO:0000178;exosome (RNase complex);0.0231431083990751!GO:0043022;ribosome binding;0.0231431083990751!GO:0016279;protein-lysine N-methyltransferase activity;0.0233577164424876!GO:0018024;histone-lysine N-methyltransferase activity;0.0233577164424876!GO:0016278;lysine N-methyltransferase activity;0.0233577164424876!GO:0000790;nuclear chromatin;0.0234239081348104!GO:0006278;RNA-dependent DNA replication;0.0235937891410551!GO:0009116;nucleoside metabolic process;0.0238297910493045!GO:0051098;regulation of binding;0.0239783270045465!GO:0031371;ubiquitin conjugating enzyme complex;0.0242093007182354!GO:0030176;integral to endoplasmic reticulum membrane;0.0243460592862182!GO:0007034;vacuolar transport;0.0254637223455897!GO:0006892;post-Golgi vesicle-mediated transport;0.0254637223455897!GO:0008180;signalosome;0.0254707299012473!GO:0030658;transport vesicle membrane;0.0257001558211118!GO:0005652;nuclear lamina;0.0263853667839122!GO:0030036;actin cytoskeleton organization and biogenesis;0.0274166785169131!GO:0045941;positive regulation of transcription;0.0276607046357704!GO:0031647;regulation of protein stability;0.0280666533552554!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0284681532021745!GO:0042802;identical protein binding;0.0285253860386905!GO:0000152;nuclear ubiquitin ligase complex;0.0288917588003698!GO:0030127;COPII vesicle coat;0.0295371247607325!GO:0012507;ER to Golgi transport vesicle membrane;0.0295371247607325!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0304511986510983!GO:0007021;tubulin folding;0.0307164804258887!GO:0051881;regulation of mitochondrial membrane potential;0.0307704024893329!GO:0005784;translocon complex;0.0309306026393533!GO:0000228;nuclear chromosome;0.0309504248244539!GO:0030522;intracellular receptor-mediated signaling pathway;0.0309947542430244!GO:0008213;protein amino acid alkylation;0.0311357196193991!GO:0006479;protein amino acid methylation;0.0311357196193991!GO:0046966;thyroid hormone receptor binding;0.0312928702270514!GO:0046426;negative regulation of JAK-STAT cascade;0.031301943091709!GO:0016790;thiolester hydrolase activity;0.0321654171829515!GO:0017134;fibroblast growth factor binding;0.0329221452200069!GO:0005871;kinesin complex;0.0335165079111748!GO:0005720;nuclear heterochromatin;0.0340439607786677!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0344623481205224!GO:0008361;regulation of cell size;0.0348578530834278!GO:0006379;mRNA cleavage;0.0351599098920871!GO:0016579;protein deubiquitination;0.0353261758389047!GO:0022884;macromolecule transmembrane transporter activity;0.0355047480104296!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0355047480104296!GO:0001558;regulation of cell growth;0.0355196434938612!GO:0003887;DNA-directed DNA polymerase activity;0.0360802140172233!GO:0050178;phenylpyruvate tautomerase activity;0.0366560105132227!GO:0008287;protein serine/threonine phosphatase complex;0.0367346379867495!GO:0006672;ceramide metabolic process;0.0372677103022987!GO:0009119;ribonucleoside metabolic process;0.037680007787022!GO:0006818;hydrogen transport;0.0377119286634381!GO:0016491;oxidoreductase activity;0.0378232452070758!GO:0008610;lipid biosynthetic process;0.0382020443690581!GO:0004520;endodeoxyribonuclease activity;0.0382020443690581!GO:0005881;cytoplasmic microtubule;0.0399381711739703!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0406316216255052!GO:0007264;small GTPase mediated signal transduction;0.0408429666564506!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0410946424783765!GO:0010257;NADH dehydrogenase complex assembly;0.0410946424783765!GO:0033108;mitochondrial respiratory chain complex assembly;0.0410946424783765!GO:0051053;negative regulation of DNA metabolic process;0.0418049626094928!GO:0004532;exoribonuclease activity;0.0426730364748082!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0426730364748082!GO:0000077;DNA damage checkpoint;0.0428689170068431!GO:0004448;isocitrate dehydrogenase activity;0.0433628999141339!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0434786132400113!GO:0051338;regulation of transferase activity;0.0434786132400113!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.044007829958518!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.044007829958518!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.044007829958518!GO:0003725;double-stranded RNA binding;0.044022272796757!GO:0015992;proton transport;0.0444776405755908!GO:0016049;cell growth;0.0446103507425546!GO:0005663;DNA replication factor C complex;0.044708628117471!GO:0004680;casein kinase activity;0.044708628117471!GO:0031901;early endosome membrane;0.0452587848053216!GO:0009113;purine base biosynthetic process;0.0456565768604827!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0456653980918742!GO:0000805;X chromosome;0.0457151196624609!GO:0001740;Barr body;0.0457151196624609!GO:0030503;regulation of cell redox homeostasis;0.0469732946318223!GO:0030119;AP-type membrane coat adaptor complex;0.0473308224362516!GO:0048819;regulation of hair follicle maturation;0.0473308224362516!GO:0051794;regulation of catagen;0.0473308224362516!GO:0051795;positive regulation of catagen;0.0473308224362516!GO:0048818;positive regulation of hair follicle maturation;0.0473308224362516!GO:0030496;midbody;0.0475393467818709!GO:0030911;TPR domain binding;0.0475651549780356!GO:0048037;cofactor binding;0.0477171842029604!GO:0043549;regulation of kinase activity;0.0480551723748793!GO:0008632;apoptotic program;0.0481611058985538!GO:0000726;non-recombinational repair;0.0491989379262248!GO:0000086;G2/M transition of mitotic cell cycle;0.0497235329156435
|sample_id=10805
|sample_id=10805
|sample_note=
|sample_note=
Line 76: Line 101:
|sample_tissue=nasal septum
|sample_tissue=nasal septum
|top_motifs=FOXP1:4.11842010193;TOPORS:3.40375240093;PITX1..3:3.25800569276;TEF:2.8818015384;LHX3,4:2.87309973186;ALX1:2.634358848;VSX1,2:2.58407779138;FOXD3:2.40548637408;RBPJ:2.31761564175;PAX4:2.30697073792;NANOG:2.25646352597;POU1F1:2.05184804805;ZBTB16:2.03243559428;PAX8:1.99972673991;HOX{A4,D4}:1.79451458658;CRX:1.73350365241;AIRE:1.7281959369;CDC5L:1.6471261871;T:1.64254143166;TFDP1:1.54301254132;NRF1:1.53669443744;POU6F1:1.52553442166;NKX2-3_NKX2-5:1.50175530244;NFY{A,B,C}:1.48675232484;ZNF143:1.48329182483;E2F1..5:1.47586456232;RFX1:1.4680803843;CDX1,2,4:1.44659212366;HOX{A6,A7,B6,B7}:1.44095516048;NKX6-1,2:1.41216472374;LEF1_TCF7_TCF7L1,2:1.38249551507;YY1:1.29987527358;ADNP_IRX_SIX_ZHX:1.21905968944;SOX5:1.20816327034;HMGA1,2:1.18102489076;GFI1:1.16250655399;SOX17:1.11707997202;ONECUT1,2:1.10805403653;FOXL1:1.09568435767;BREu{core}:1.01490739487;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.963263097663;ATF4:0.956459752781;SP1:0.907704830184;IKZF2:0.846773059041;POU2F1..3:0.843430503408;RXR{A,B,G}:0.813699236197;PDX1:0.804282601041;FOXQ1:0.799229911909;ZNF384:0.773012967668;RFX2..5_RFXANK_RFXAP:0.769289825757;CREB1:0.767343545278;EVI1:0.719941355963;STAT5{A,B}:0.69935102256;SOX{8,9,10}:0.677144620853;PATZ1:0.662410924725;RORA:0.644667179178;FOXA2:0.637883419917;BPTF:0.62353717341;NKX3-1:0.598549869703;RREB1:0.598068927426;PRRX1,2:0.591093989782;PBX1:0.585736717927;HOX{A5,B5}:0.568452385151;SOX2:0.565872397434;MED-1{core}:0.541307670544;FOXM1:0.519277729699;CUX2:0.514361263311;SNAI1..3:0.511672835303;ZFP161:0.504854640027;ZIC1..3:0.487488979912;ELK1,4_GABP{A,B1}:0.467047884652;FOX{I1,J2}:0.401947404702;MTE{core}:0.354057051861;ZEB1:0.337632014318;OCT4_SOX2{dimer}:0.296687818016;FOX{F1,F2,J1}:0.277366077433;STAT1,3:0.260655240115;NKX2-2,8:0.244244578389;TFAP2B:0.237505388912;FOXN1:0.231754029764;ARID5B:0.22343503755;HBP1_HMGB_SSRP1_UBTF:0.215692492816;POU3F1..4:0.200331194545;TP53:0.193178116232;GZF1:0.189355617167;NR5A1,2:0.170683996675;MYB:0.151246896974;FOX{D1,D2}:0.114871981227;XCPE1{core}:0.111742246791;PAX3,7:0.110002877583;MEF2{A,B,C,D}:0.102037111057;HIC1:0.0954917778822;HIF1A:0.0446179514399;NKX2-1,4:0.0348263596563;POU5F1:0.0200717792611;PAX5:0.00212449018296;GATA6:0.00133844488732;HNF1A:-0.0203098910053;HOXA9_MEIS1:-0.03585076549;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.06758325868;ZBTB6:-0.105836198915;KLF4:-0.113241077996;MYBL2:-0.119953380849;bHLH_family:-0.153927205951;FOXO1,3,4:-0.159736094587;PRDM1:-0.184498344431;REST:-0.21690515052;ATF2:-0.218833430877;NFIL3:-0.22904512232;AHR_ARNT_ARNT2:-0.230675413624;TEAD1:-0.239095376064;FOXP3:-0.246250091972;ATF5_CREB3:-0.257367311116;ESR1:-0.285453223468;GTF2A1,2:-0.333464485527;EN1,2:-0.372785306103;GTF2I:-0.378323078457;MZF1:-0.405291070899;DBP:-0.427843313539;EGR1..3:-0.434204191658;HNF4A_NR2F1,2:-0.434610388012;LMO2:-0.435014049392;NR3C1:-0.450351731149;MAZ:-0.467328610742;MTF1:-0.4794014387;AR:-0.500738057543;TFAP2{A,C}:-0.522626216133;TAL1_TCF{3,4,12}:-0.5976349174;MYFfamily:-0.642594156656;NKX3-2:-0.65317343944;PAX6:-0.65532919323;TLX2:-0.660515224305;DMAP1_NCOR{1,2}_SMARC:-0.662816284834;SPIB:-0.665324801838;IRF7:-0.667070165763;NR1H4:-0.678525898011;BACH2:-0.697731673771;FOS_FOS{B,L1}_JUN{B,D}:-0.698468676298;TBP:-0.702943935786;RUNX1..3:-0.708265447347;RXRA_VDR{dimer}:-0.731727578445;TLX1..3_NFIC{dimer}:-0.76457355985;ESRRA:-0.805020906702;UFEwm:-0.815980888595;GATA4:-0.819003633549;NFKB1_REL_RELA:-0.824099995369;CEBPA,B_DDIT3:-0.871059463656;SREBF1,2:-0.87371979939;NFE2:-0.875869958492;MYOD1:-0.888081359638;FOSL2:-0.944333870443;TGIF1:-0.981787009252;GFI1B:-0.983321516734;NANOG{mouse}:-1.01075796841;PAX1,9:-1.01098848222;HLF:-1.0124159014;HAND1,2:-1.02289704931;ALX4:-1.03960948923;JUN:-1.07787735339;ETS1,2:-1.09628732038;SPI1:-1.1193917635;ELF1,2,4:-1.12575238241;IRF1,2:-1.1538009889;NHLH1,2:-1.19247593782;IKZF1:-1.22335337818;PPARG:-1.23050827597;STAT2,4,6:-1.24477357736;SRF:-1.26354565983;GCM1,2:-1.26869065958;ZNF148:-1.30116944144;TBX4,5:-1.31959467837;EBF1:-1.32916001726;PAX2:-1.39119514008;ZNF238:-1.39386407284;XBP1:-1.41727849119;ZNF423:-1.43252165189;TFAP4:-1.5541636813;TFCP2:-1.67248968081;NFE2L2:-1.6751707128;GLI1..3:-1.68912047709;HSF1,2:-1.7388100045;NFIX:-1.98002982368;NR6A1:-1.98738183396;HES1:-1.99653453537;ATF6:-2.02324130864;NFATC1..3:-2.12163030436;SMAD1..7,9:-2.25465394368;SPZ1:-2.30214121573;MAFB:-2.32330023077;HMX1:-2.37097379298;EP300:-2.43021600498;NFE2L1:-2.71913215955
|top_motifs=FOXP1:4.11842010193;TOPORS:3.40375240093;PITX1..3:3.25800569276;TEF:2.8818015384;LHX3,4:2.87309973186;ALX1:2.634358848;VSX1,2:2.58407779138;FOXD3:2.40548637408;RBPJ:2.31761564175;PAX4:2.30697073792;NANOG:2.25646352597;POU1F1:2.05184804805;ZBTB16:2.03243559428;PAX8:1.99972673991;HOX{A4,D4}:1.79451458658;CRX:1.73350365241;AIRE:1.7281959369;CDC5L:1.6471261871;T:1.64254143166;TFDP1:1.54301254132;NRF1:1.53669443744;POU6F1:1.52553442166;NKX2-3_NKX2-5:1.50175530244;NFY{A,B,C}:1.48675232484;ZNF143:1.48329182483;E2F1..5:1.47586456232;RFX1:1.4680803843;CDX1,2,4:1.44659212366;HOX{A6,A7,B6,B7}:1.44095516048;NKX6-1,2:1.41216472374;LEF1_TCF7_TCF7L1,2:1.38249551507;YY1:1.29987527358;ADNP_IRX_SIX_ZHX:1.21905968944;SOX5:1.20816327034;HMGA1,2:1.18102489076;GFI1:1.16250655399;SOX17:1.11707997202;ONECUT1,2:1.10805403653;FOXL1:1.09568435767;BREu{core}:1.01490739487;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.963263097663;ATF4:0.956459752781;SP1:0.907704830184;IKZF2:0.846773059041;POU2F1..3:0.843430503408;RXR{A,B,G}:0.813699236197;PDX1:0.804282601041;FOXQ1:0.799229911909;ZNF384:0.773012967668;RFX2..5_RFXANK_RFXAP:0.769289825757;CREB1:0.767343545278;EVI1:0.719941355963;STAT5{A,B}:0.69935102256;SOX{8,9,10}:0.677144620853;PATZ1:0.662410924725;RORA:0.644667179178;FOXA2:0.637883419917;BPTF:0.62353717341;NKX3-1:0.598549869703;RREB1:0.598068927426;PRRX1,2:0.591093989782;PBX1:0.585736717927;HOX{A5,B5}:0.568452385151;SOX2:0.565872397434;MED-1{core}:0.541307670544;FOXM1:0.519277729699;CUX2:0.514361263311;SNAI1..3:0.511672835303;ZFP161:0.504854640027;ZIC1..3:0.487488979912;ELK1,4_GABP{A,B1}:0.467047884652;FOX{I1,J2}:0.401947404702;MTE{core}:0.354057051861;ZEB1:0.337632014318;OCT4_SOX2{dimer}:0.296687818016;FOX{F1,F2,J1}:0.277366077433;STAT1,3:0.260655240115;NKX2-2,8:0.244244578389;TFAP2B:0.237505388912;FOXN1:0.231754029764;ARID5B:0.22343503755;HBP1_HMGB_SSRP1_UBTF:0.215692492816;POU3F1..4:0.200331194545;TP53:0.193178116232;GZF1:0.189355617167;NR5A1,2:0.170683996675;MYB:0.151246896974;FOX{D1,D2}:0.114871981227;XCPE1{core}:0.111742246791;PAX3,7:0.110002877583;MEF2{A,B,C,D}:0.102037111057;HIC1:0.0954917778822;HIF1A:0.0446179514399;NKX2-1,4:0.0348263596563;POU5F1:0.0200717792611;PAX5:0.00212449018296;GATA6:0.00133844488732;HNF1A:-0.0203098910053;HOXA9_MEIS1:-0.03585076549;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.06758325868;ZBTB6:-0.105836198915;KLF4:-0.113241077996;MYBL2:-0.119953380849;bHLH_family:-0.153927205951;FOXO1,3,4:-0.159736094587;PRDM1:-0.184498344431;REST:-0.21690515052;ATF2:-0.218833430877;NFIL3:-0.22904512232;AHR_ARNT_ARNT2:-0.230675413624;TEAD1:-0.239095376064;FOXP3:-0.246250091972;ATF5_CREB3:-0.257367311116;ESR1:-0.285453223468;GTF2A1,2:-0.333464485527;EN1,2:-0.372785306103;GTF2I:-0.378323078457;MZF1:-0.405291070899;DBP:-0.427843313539;EGR1..3:-0.434204191658;HNF4A_NR2F1,2:-0.434610388012;LMO2:-0.435014049392;NR3C1:-0.450351731149;MAZ:-0.467328610742;MTF1:-0.4794014387;AR:-0.500738057543;TFAP2{A,C}:-0.522626216133;TAL1_TCF{3,4,12}:-0.5976349174;MYFfamily:-0.642594156656;NKX3-2:-0.65317343944;PAX6:-0.65532919323;TLX2:-0.660515224305;DMAP1_NCOR{1,2}_SMARC:-0.662816284834;SPIB:-0.665324801838;IRF7:-0.667070165763;NR1H4:-0.678525898011;BACH2:-0.697731673771;FOS_FOS{B,L1}_JUN{B,D}:-0.698468676298;TBP:-0.702943935786;RUNX1..3:-0.708265447347;RXRA_VDR{dimer}:-0.731727578445;TLX1..3_NFIC{dimer}:-0.76457355985;ESRRA:-0.805020906702;UFEwm:-0.815980888595;GATA4:-0.819003633549;NFKB1_REL_RELA:-0.824099995369;CEBPA,B_DDIT3:-0.871059463656;SREBF1,2:-0.87371979939;NFE2:-0.875869958492;MYOD1:-0.888081359638;FOSL2:-0.944333870443;TGIF1:-0.981787009252;GFI1B:-0.983321516734;NANOG{mouse}:-1.01075796841;PAX1,9:-1.01098848222;HLF:-1.0124159014;HAND1,2:-1.02289704931;ALX4:-1.03960948923;JUN:-1.07787735339;ETS1,2:-1.09628732038;SPI1:-1.1193917635;ELF1,2,4:-1.12575238241;IRF1,2:-1.1538009889;NHLH1,2:-1.19247593782;IKZF1:-1.22335337818;PPARG:-1.23050827597;STAT2,4,6:-1.24477357736;SRF:-1.26354565983;GCM1,2:-1.26869065958;ZNF148:-1.30116944144;TBX4,5:-1.31959467837;EBF1:-1.32916001726;PAX2:-1.39119514008;ZNF238:-1.39386407284;XBP1:-1.41727849119;ZNF423:-1.43252165189;TFAP4:-1.5541636813;TFCP2:-1.67248968081;NFE2L2:-1.6751707128;GLI1..3:-1.68912047709;HSF1,2:-1.7388100045;NFIX:-1.98002982368;NR6A1:-1.98738183396;HES1:-1.99653453537;ATF6:-2.02324130864;NFATC1..3:-2.12163030436;SMAD1..7,9:-2.25465394368;SPZ1:-2.30214121573;MAFB:-2.32330023077;HMX1:-2.37097379298;EP300:-2.43021600498;NFE2L1:-2.71913215955
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10805-111A4;search_select_hide=table117:FF:10805-111A4
}}
}}

Latest revision as of 15:05, 3 June 2020

Name:anaplastic squamous cell carcinoma cell line:RPMI 2650
Species:Human (Homo sapiens)
Library ID:CNhs11889
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuenasal septum
dev stageNA
sexmale
ageunknown
cell typeunclassifiable
cell lineRPMI 2650
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005598
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11889 CAGE DRX007828 DRR008700
Accession ID Hg19

Library idBAMCTSS
CNhs11889 DRZ000125 DRZ001510
Accession ID Hg38

Library idBAMCTSS
CNhs11889 DRZ011475 DRZ012860
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005598
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10086 RNA-Seq DRX057143 DRR062902
Accession ID Hg19

Library idBAMCTSS
RDhi10086 DRZ007978


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.513
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.526
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0832
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
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C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11889

Jaspar motifP-value
MA0002.28.9008e-5
MA0003.10.0234
MA0004.10.849
MA0006.10.495
MA0007.10.305
MA0009.10.991
MA0014.10.526
MA0017.10.0619
MA0018.20.19
MA0019.10.0995
MA0024.16.90328e-4
MA0025.10.357
MA0027.10.849
MA0028.10.3
MA0029.10.912
MA0030.10.649
MA0031.10.524
MA0035.20.264
MA0038.10.111
MA0039.20.31
MA0040.10.265
MA0041.10.323
MA0042.10.637
MA0043.10.7
MA0046.10.936
MA0047.20.362
MA0048.10.119
MA0050.10.00237
MA0051.10.023
MA0052.10.482
MA0055.10.00488
MA0057.10.418
MA0058.10.934
MA0059.10.753
MA0060.11.48527e-5
MA0061.10.00181
MA0062.20.996
MA0065.20.209
MA0066.10.15
MA0067.10.832
MA0068.10.309
MA0069.10.633
MA0070.10.604
MA0071.10.874
MA0072.10.779
MA0073.10.0787
MA0074.10.317
MA0076.10.203
MA0077.10.546
MA0078.10.636
MA0079.20.722
MA0080.26.15892e-10
MA0081.10.0521
MA0083.10.0218
MA0084.10.904
MA0087.10.624
MA0088.10.389
MA0090.10.566
MA0091.10.0254
MA0092.10.14
MA0093.10.804
MA0099.21.6981e-11
MA0100.10.332
MA0101.10.015
MA0102.20.0437
MA0103.10.621
MA0104.20.583
MA0105.14.0459e-4
MA0106.10.556
MA0107.10.00183
MA0108.20.307
MA0111.10.428
MA0112.23.6584e-5
MA0113.10.406
MA0114.10.344
MA0115.10.392
MA0116.10.0078
MA0117.10.649
MA0119.10.551
MA0122.10.525
MA0124.10.317
MA0125.10.187
MA0131.10.102
MA0135.10.0672
MA0136.14.99375e-9
MA0137.20.0341
MA0138.20.0564
MA0139.10.391
MA0140.10.389
MA0141.10.299
MA0142.10.799
MA0143.10.619
MA0144.10.00432
MA0145.10.0393
MA0146.10.803
MA0147.10.54
MA0148.10.646
MA0149.10.537
MA0150.14.94233e-4
MA0152.10.915
MA0153.10.366
MA0154.10.00264
MA0155.10.435
MA0156.11.57511e-5
MA0157.10.0961
MA0159.10.0651
MA0160.10.216
MA0162.10.268
MA0163.10.113
MA0164.10.939
MA0258.10.0404
MA0259.10.267



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11889

Novel motifP-value
10.517
100.53
1000.454
1010.181
1020.583
1030.00451
1040.638
1050.933
1060.00118
1070.048
1080.464
1090.208
110.398
1100.821
1110.847
1120.283
1130.348
1140.063
1150.138
1160.793
1170.91
1180.624
1190.756
120.876
1200.273
1210.851
1220.34
1230.00212
1240.379
1250.94
1260.14
1270.0751
1280.146
1290.286
130.799
1300.481
1310.356
1320.883
1330.46
1340.415
1350.0576
1360.444
1370.572
1380.452
1390.774
140.861
1400.391
1410.799
1420.431
1434.71542e-4
1440.912
1450.89
1460.497
1470.482
1480.00396
1490.274
150.277
1500.416
1510.591
1520.0368
1530.935
1540.928
1550.406
1560.492
1570.466
1580.946
1590.47
160.236
1600.427
1610.7
1620.42
1630.149
1640.81
1650.233
1660.9
1670.238
1680.0526
1690.152
170.236
180.0526
190.105
20.199
200.173
210.894
220.125
230.00423
240.159
250.546
260.541
270.121
280.686
290.507
30.526
300.29
310.671
320.00921
330.385
340.304
350.662
360.577
370.16
380.673
390.323
40.726
400.851
410.0152
420.867
430.114
440.25
450.254
460.184
470.791
480.956
490.536
50.192
500.743
510.429
520.245
530.597
540.34
550.768
560.798
570.453
580.186
590.00433
60.362
600.0486
610.833
620.0399
630.358
640.595
650.152
660.469
670.695
680.849
690.988
70.643
700.321
710.137
720.204
730.137
740.0272
750.625
760.541
770.0752
780.542
790.0431
80.462
800.0598
810.629
820.151
830.313
840.341
850.0116
860.466
870.238
880.977
890.064
90.058
900.949
910.536
920.248
930.0965
940.385
950.514
960.579
970.778
980.657
990.626



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11889


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0104204 (nasal squamous cell carcinoma cell line sample)
0104205 (RPMI-2650 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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