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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005726
|DRA_sample_Accession=CAGE@SAMD00005726
|accession_numbers=CAGE;DRX008499;DRR009371;DRZ000796;DRZ002181
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005726
|accession_numbers=CAGE;DRX008499;DRR009371;DRZ000796;DRZ002181;DRZ012146;DRZ013531
|accession_numbers_RNASeq=sRNA-Seq;DRX037265;DRR041631;DRZ007273
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002591
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002591
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.87!73.46!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.86!188.72!OSR1;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.63!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.29!ZBED1;;chr2:239756671..239756732,+!p1@TWIST2!1.56!110.75!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.46!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!32.77!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!1.48!29.38!SMAD3;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!134.48!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.44!767.33!HMGA1;;chr17:1959369..1959388,+!p2@HIC1!1.44!67.80!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.07!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!1.43!25.99!PRRX2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.73!FOXG1;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.90!NFIX;;chr18:19749386..19749404,+!p2@GATA6!1.38!32.77!GATA6;;chr1:170633058..170633084,+!p5@PRRX1!1.35!21.47!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.34!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.32!88.15!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.30!21.47!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.23!15.82!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.20!14.69!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.17!42.94!GATA6;;chr11:65686802..65686818,+!p6@DRAP1!1.12!21.47!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.34!TWIST2;;chr19:47523058..47523114,+!p1@NPAS1!1.09!11.30!NPAS1;;chr14:29234581..29234601,+!p2@FOXG1!1.09!11.30!FOXG1;;chr19:13134457..13134462,+!p5@NFIX!1.07!19.21!NFIX;;chr12:53614115..53614154,-!p1@RARG!1.06!56.50!RARG;;chr15:67430381..67430396,+!p21@SMAD3!1.05!10.17!SMAD3;;chr3:25470156..25470227,+!p2@RARB!1.05!10.17!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!1.00!9.04!CREB3L1;;chr7:27183291..27183324,-!p1@HOXA5!1.00!9.04!HOXA5;;chr7:19157248..19157268,-!p1@TWIST1!0.97!23.73!TWIST1;;chr17:7492684..7492778,-!p2@SOX15!0.95!16.95!SOX15;;chr19:13135386..13135435,+!p4@NFIX!0.95!7.91!NFIX;;chr19:46801639..46801699,+!p1@HIF3A!0.95!7.91!HIF3A;;chr1:170632137..170632172,+!p10@PRRX1!0.95!7.91!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.94!901.80!HMGA1;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.85!HIC1;;chr19:13106214..13106382,+!p1@NFIX!0.92!177.42!NFIX;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.21!TWIST1;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.94!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.95!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.89!9.04!NFIX;;chr7:27142290..27142310,-!p1@HOXA2!0.89!6.78!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.89!6.78!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.89!6.78!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.78!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.78!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.89!6.78!EBF3;;chr14:29236269..29236285,+!p3@FOXG1!0.89!6.78!FOXG1;;chr2:66662281..66662308,+!p1@MEIS1!0.88!23.73!MEIS1;;chr20:42543441..42543497,+!p1@TOX2!0.86!29.38!TOX2;;chr15:96876966..96877017,+!p12@NR2F2!0.85!9.04!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.85!7.91!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.78!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.69!FOXC2;;chr9:16870710..16870763,-!p1@BNC2!0.82!10.17!BNC2;;chr8:72756667..72756736,-!p2@MSC!0.82!9.04!MSC;;chr7:1577899..1577943,+!p3@MAFK!0.82!5.65!MAFK;;chr9:16705069..16705086,-!p3@BNC2!0.82!5.65!BNC2;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.65!HOXC4;;chr1:170632647..170632659,+!p17@PRRX1!0.82!5.65!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.65!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.65!FOXC2;;chr17:46671108..46671147,-!p1@HOXB5!0.82!5.65!HOXB5;;chr2:119604456..119604501,-!p2@EN1!0.82!5.65!EN1;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.09!AEBP1;;chr2:66662249..66662267,+!p2@MEIS1!0.81!22.60!MEIS1;;chr11:8102846..8102892,+!p1@TUB!0.81!7.91!TUB;;chr17:46622070..46622109,-!p1@HOXB2!0.80!12.43!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.69!HMGA2;;chr9:110251836..110251887,-!p4@KLF4!0.78!6.78!KLF4;;chr19:45260775..45260838,+!p5@BCL3!0.78!6.78!BCL3;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.65!CREB3L1;;chr16:88519743..88519754,+!p2@ZFPM1!0.78!5.65!ZFPM1;;chr20:42543506..42543549,+!p2@TOX2!0.77!12.43!TOX2;;chr11:615570..615721,-!p2@IRF7!0.77!10.17!IRF7;;chr18:19749517..19749531,+!p3@GATA6!0.76!9.04!GATA6;;chr17:3571887..3571918,-!p2@TAX1BP3!0.75!57.63!TAX1BP3;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.64!GATA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.47!DRAP1;;chr19:44037546..44037594,+!p1@ZNF575!0.75!10.17!ZNF575;;chr1:23696308..23696339,-!p2@ZNF436!0.74!10.17!ZNF436;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.78!HMGA2;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.52!OSR1;;chr2:45236540..45236577,-!p1@SIX2!0.74!4.52!SIX2;;chr3:25469815..25469866,+!p3@RARB!0.74!4.52!RARB;;chr17:46659728..46659749,-!p3@HOXB3!0.74!4.52!HOXB3;;chr19:13136057..13136085,+!p11@NFIX!0.74!4.52!NFIX;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.52!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.74!4.52!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.74!4.52!HOXA4;;chr16:86544113..86544145,+!p1@FOXF1!0.73!5.65!FOXF1;;chr6:34204973..34204990,+!p4@HMGA1!0.72!64.41!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!0.72!55.37!NCOR2;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.08!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.78!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.72!5.65!AEBP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.52!GLIS1;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.65!PRDM8;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.65!EBF1;;chr16:88519669..88519726,+!p1@ZFPM1!0.70!40.68!ZFPM1;;chr11:65686952..65686975,+!p5@DRAP1!0.70!24.86!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.91!AEBP1;;chr18:3449821..3449860,+!p7@TGIF1!0.70!7.91!TGIF1;;chr7:14029283..14029311,-!p1@ETV1!0.69!23.73!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.69!20.34!MEIS2;;chr6:1389789..1389821,+!p1@FOXF2!0.69!5.65!FOXF2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.52!TCF4;;chr19:45251943..45252006,+!p1@BCL3!0.68!114.14!BCL3;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.69!DPF3;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.78!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.67!302.86!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.67!111.88!FOSL1;;chr8:37553292..37553317,+!p1@ZNF703!0.67!100.58!ZNF703;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.21!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.67!10.17!EBF1;;chr17:59477197..59477212,+!p2@TBX2!0.67!6.78!TBX2;;chr19:58987786..58987805,+!p3@ZNF446!0.67!5.65!ZNF446;;chr20:6748325..6748352,+!p1@BMP2!0.67!5.65!BMP2;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.82!HHEX;;chr1:158969752..158969780,+!p6@IFI16!0.66!6.78!IFI16;;chr19:3366625..3366629,+!p4@NFIC!0.66!5.65!NFIC;;chr9:16870659..16870675,-!p2@BNC2!0.66!4.52!BNC2;;chr7:14029312..14029325,-!p4@ETV1!0.66!4.52!ETV1;;chr4:81104985..81105005,+!p4@PRDM8!0.66!4.52!PRDM8;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.34!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!0.64!14.69!SIX1;;chr5:139487608..139487663,+!p3@PURA!0.64!7.91!PURA;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.39!HOXA4;;chr8:22550530..22550609,-!p2@EGR3!0.64!3.39!EGR3;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.39!EBF2;;chr10:131762410..131762436,-!p2@EBF3!0.64!3.39!EBF3;;chr10:64578528..64578542,-!p5@EGR2!0.64!3.39!EGR2;;chr11:32457103..32457123,-!p3@WT1!0.64!3.39!WT1;;chr13:45150455..45150472,-!p8@TSC22D1!0.64!3.39!TSC22D1;;chr14:29234870..29234930,+!p7@FOXG1!0.64!3.39!FOXG1;;chr16:86601088..86601105,+!p5@FOXC2!0.64!3.39!FOXC2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.64!3.39!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!0.64!3.39!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.64!3.39!GATA6;;chr19:13135582..13135600,+!p3@NFIX!0.64!3.39!NFIX;;chr1:170633225..170633230,+!p25@PRRX1!0.64!3.39!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.64!3.39!PRRX1;;chr1:221054853..221054873,+!p9@HLX!0.64!3.39!HLX;;chr2:85981107..85981120,+!p3@ATOH8!0.64!3.39!ATOH8;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.39!ZNF385D;;chr4:121843402..121843416,+!p4@PRDM5!0.64!3.39!PRDM5;;chr19:50432453..50432468,+!p1@ATF5!0.63!216.98!ATF5;;chr1:8934931..8934947,-!p4@ENO1!0.63!12.43!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.62!5.65!MEIS3;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.65!GLI2;;chr2:74730430..74730451,-!p1@LBX2!0.62!5.65!LBX2;;chr11:65687243..65687276,+!p8@DRAP1!0.62!4.52!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.61!5.65!MSX2;;chr6:1610293..1610310,+!p1@FOXC1!0.61!5.65!FOXC1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.61!5.65!MEIS3P1;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!9.04!ZFPM2;;chr3:71007770..71007789,-!p9@FOXP1!0.60!9.04!FOXP1;;chr1:221053049..221053075,+!p3@HLX!0.60!5.65!HLX;;chr12:125002827..125002855,-!p5@NCOR2!0.60!4.52!NCOR2;;chr18:3452133..3452150,+!p19@TGIF1!0.60!3.39!TGIF1;;chr1:164528410..164528428,+!p1@PBX1!0.59!25.99!PBX1;;chr9:35732647..35732678,+!p2@CREB3!0.59!19.21!CREB3;;chr12:54772960..54773015,-!p3@ZNF385A!0.59!16.95!ZNF385A;;chr17:46621937..46621966,-!p2@HOXB2!0.59!9.04!HOXB2;;chr10:64576105..64576133,-!p1@EGR2!0.59!6.78!EGR2;;chr16:8962202..8962222,-!p3@CARHSP1!0.59!5.65!CARHSP1;;chr3:25469724..25469773,+!p1@RARB!0.59!4.52!RARB;;chr7:44143738..44143760,+!p4@AEBP1!0.59!3.39!AEBP1;;chr8:72756637..72756664,-!p3@MSC!0.59!3.39!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.58!444.12!CEBPD;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.17!TBX2;;chr9:14083467..14083483,-!p4@NFIB!0.58!7.91!NFIB;;chr2:200323414..200323455,-!p1@SATB2!0.58!6.78!SATB2;;chr6:85474299..85474324,-!p1@TBX18!0.58!5.65!TBX18;;chr17:46675420..46675465,-!p3@HOXB6!0.58!3.39!HOXB6;;chr4:81104958..81104981,+!p5@PRDM8!0.58!3.39!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!0.58!3.39!PRDM8;;chr17:38256822..38256851,-!p1@NR1D1!0.57!25.99!NR1D1;;chr3:52001426..52001447,-!p3@PCBP4!0.57!9.04!PCBP4;;chr10:77161133..77161176,-!p3@ZNF503!0.57!6.78!ZNF503;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.52!HOXB2;;chr19:56111614..56111634,+!p3@ZNF524!0.57!4.52!ZNF524;;chr1:221052994..221053008,+!p6@HLX!0.57!3.39!HLX;;chr6:34204642..3420466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|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.87!73.46!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.86!188.72!OSR1;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.63!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.29!ZBED1;;chr2:239756671..239756732,+!p1@TWIST2!1.56!110.75!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.46!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!32.77!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!1.48!29.38!SMAD3;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!134.48!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.44!767.33!HMGA1;;chr17:1959369..1959388,+!p2@HIC1!1.44!67.80!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.07!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!1.43!25.99!PRRX2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.73!FOXG1;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.90!NFIX;;chr18:19749386..19749404,+!p2@GATA6!1.38!32.77!GATA6;;chr1:170633058..170633084,+!p5@PRRX1!1.35!21.47!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.34!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.32!88.15!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.30!21.47!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.23!15.82!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.20!14.69!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.17!42.94!GATA6;;chr11:65686802..65686818,+!p6@DRAP1!1.12!21.47!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.34!TWIST2;;chr19:47523058..47523114,+!p1@NPAS1!1.09!11.30!NPAS1;;chr14:29234581..29234601,+!p2@FOXG1!1.09!11.30!FOXG1;;chr19:13134457..13134462,+!p5@NFIX!1.07!19.21!NFIX;;chr12:53614115..53614154,-!p1@RARG!1.06!56.50!RARG;;chr15:67430381..67430396,+!p21@SMAD3!1.05!10.17!SMAD3;;chr3:25470156..25470227,+!p2@RARB!1.05!10.17!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!1.00!9.04!CREB3L1;;chr7:27183291..27183324,-!p1@HOXA5!1.00!9.04!HOXA5;;chr7:19157248..19157268,-!p1@TWIST1!0.97!23.73!TWIST1;;chr17:7492684..7492778,-!p2@SOX15!0.95!16.95!SOX15;;chr19:13135386..13135435,+!p4@NFIX!0.95!7.91!NFIX;;chr19:46801639..46801699,+!p1@HIF3A!0.95!7.91!HIF3A;;chr1:170632137..170632172,+!p10@PRRX1!0.95!7.91!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.94!901.80!HMGA1;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.85!HIC1;;chr19:13106214..13106382,+!p1@NFIX!0.92!177.42!NFIX;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.21!TWIST1;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.94!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.95!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.89!9.04!NFIX;;chr7:27142290..27142310,-!p1@HOXA2!0.89!6.78!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.89!6.78!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.89!6.78!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.78!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.78!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.89!6.78!EBF3;;chr14:29236269..29236285,+!p3@FOXG1!0.89!6.78!FOXG1;;chr2:66662281..66662308,+!p1@MEIS1!0.88!23.73!MEIS1;;chr20:42543441..42543497,+!p1@TOX2!0.86!29.38!TOX2;;chr15:96876966..96877017,+!p12@NR2F2!0.85!9.04!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.85!7.91!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.78!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.69!FOXC2;;chr9:16870710..16870763,-!p1@BNC2!0.82!10.17!BNC2;;chr8:72756667..72756736,-!p2@MSC!0.82!9.04!MSC;;chr7:1577899..1577943,+!p3@MAFK!0.82!5.65!MAFK;;chr9:16705069..16705086,-!p3@BNC2!0.82!5.65!BNC2;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.65!HOXC4;;chr1:170632647..170632659,+!p17@PRRX1!0.82!5.65!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.65!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.65!FOXC2;;chr17:46671108..46671147,-!p1@HOXB5!0.82!5.65!HOXB5;;chr2:119604456..119604501,-!p2@EN1!0.82!5.65!EN1;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.09!AEBP1;;chr2:66662249..66662267,+!p2@MEIS1!0.81!22.60!MEIS1;;chr11:8102846..8102892,+!p1@TUB!0.81!7.91!TUB;;chr17:46622070..46622109,-!p1@HOXB2!0.80!12.43!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.69!HMGA2;;chr9:110251836..110251887,-!p4@KLF4!0.78!6.78!KLF4;;chr19:45260775..45260838,+!p5@BCL3!0.78!6.78!BCL3;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.65!CREB3L1;;chr16:88519743..88519754,+!p2@ZFPM1!0.78!5.65!ZFPM1;;chr20:42543506..42543549,+!p2@TOX2!0.77!12.43!TOX2;;chr11:615570..615721,-!p2@IRF7!0.77!10.17!IRF7;;chr18:19749517..19749531,+!p3@GATA6!0.76!9.04!GATA6;;chr17:3571887..3571918,-!p2@TAX1BP3!0.75!57.63!TAX1BP3;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.64!GATA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.47!DRAP1;;chr19:44037546..44037594,+!p1@ZNF575!0.75!10.17!ZNF575;;chr1:23696308..23696339,-!p2@ZNF436!0.74!10.17!ZNF436;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.78!HMGA2;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.52!OSR1;;chr2:45236540..45236577,-!p1@SIX2!0.74!4.52!SIX2;;chr3:25469815..25469866,+!p3@RARB!0.74!4.52!RARB;;chr17:46659728..46659749,-!p3@HOXB3!0.74!4.52!HOXB3;;chr19:13136057..13136085,+!p11@NFIX!0.74!4.52!NFIX;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.52!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.74!4.52!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.74!4.52!HOXA4;;chr16:86544113..86544145,+!p1@FOXF1!0.73!5.65!FOXF1;;chr6:34204973..34204990,+!p4@HMGA1!0.72!64.41!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!0.72!55.37!NCOR2;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.08!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.78!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.72!5.65!AEBP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.52!GLIS1;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.65!PRDM8;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.65!EBF1;;chr16:88519669..88519726,+!p1@ZFPM1!0.70!40.68!ZFPM1;;chr11:65686952..65686975,+!p5@DRAP1!0.70!24.86!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.91!AEBP1;;chr18:3449821..3449860,+!p7@TGIF1!0.70!7.91!TGIF1;;chr7:14029283..14029311,-!p1@ETV1!0.69!23.73!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.69!20.34!MEIS2;;chr6:1389789..1389821,+!p1@FOXF2!0.69!5.65!FOXF2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.52!TCF4;;chr19:45251943..45252006,+!p1@BCL3!0.68!114.14!BCL3;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.69!DPF3;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.78!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.67!302.86!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.67!111.88!FOSL1;;chr8:37553292..37553317,+!p1@ZNF703!0.67!100.58!ZNF703;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.21!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.67!10.17!EBF1;;chr17:59477197..59477212,+!p2@TBX2!0.67!6.78!TBX2;;chr19:58987786..58987805,+!p3@ZNF446!0.67!5.65!ZNF446;;chr20:6748325..6748352,+!p1@BMP2!0.67!5.65!BMP2;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.82!HHEX;;chr1:158969752..158969780,+!p6@IFI16!0.66!6.78!IFI16;;chr19:3366625..3366629,+!p4@NFIC!0.66!5.65!NFIC;;chr9:16870659..16870675,-!p2@BNC2!0.66!4.52!BNC2;;chr7:14029312..14029325,-!p4@ETV1!0.66!4.52!ETV1;;chr4:81104985..81105005,+!p4@PRDM8!0.66!4.52!PRDM8;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.34!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!0.64!14.69!SIX1;;chr5:139487608..139487663,+!p3@PURA!0.64!7.91!PURA;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.39!HOXA4;;chr8:22550530..22550609,-!p2@EGR3!0.64!3.39!EGR3;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.39!EBF2;;chr10:131762410..131762436,-!p2@EBF3!0.64!3.39!EBF3;;chr10:64578528..64578542,-!p5@EGR2!0.64!3.39!EGR2;;chr11:32457103..32457123,-!p3@WT1!0.64!3.39!WT1;;chr13:45150455..45150472,-!p8@TSC22D1!0.64!3.39!TSC22D1;;chr14:29234870..29234930,+!p7@FOXG1!0.64!3.39!FOXG1;;chr16:86601088..86601105,+!p5@FOXC2!0.64!3.39!FOXC2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.64!3.39!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!0.64!3.39!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.64!3.39!GATA6;;chr19:13135582..13135600,+!p3@NFIX!0.64!3.39!NFIX;;chr1:170633225..170633230,+!p25@PRRX1!0.64!3.39!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.64!3.39!PRRX1;;chr1:221054853..221054873,+!p9@HLX!0.64!3.39!HLX;;chr2:85981107..85981120,+!p3@ATOH8!0.64!3.39!ATOH8;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.39!ZNF385D;;chr4:121843402..121843416,+!p4@PRDM5!0.64!3.39!PRDM5;;chr19:50432453..50432468,+!p1@ATF5!0.63!216.98!ATF5;;chr1:8934931..8934947,-!p4@ENO1!0.63!12.43!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.62!5.65!MEIS3;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.65!GLI2;;chr2:74730430..74730451,-!p1@LBX2!0.62!5.65!LBX2;;chr11:65687243..65687276,+!p8@DRAP1!0.62!4.52!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.61!5.65!MSX2;;chr6:1610293..1610310,+!p1@FOXC1!0.61!5.65!FOXC1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.61!5.65!MEIS3P1;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!9.04!ZFPM2;;chr3:71007770..71007789,-!p9@FOXP1!0.60!9.04!FOXP1;;chr1:221053049..221053075,+!p3@HLX!0.60!5.65!HLX;;chr12:125002827..125002855,-!p5@NCOR2!0.60!4.52!NCOR2;;chr18:3452133..3452150,+!p19@TGIF1!0.60!3.39!TGIF1;;chr1:164528410..164528428,+!p1@PBX1!0.59!25.99!PBX1;;chr9:35732647..35732678,+!p2@CREB3!0.59!19.21!CREB3;;chr12:54772960..54773015,-!p3@ZNF385A!0.59!16.95!ZNF385A;;chr17:46621937..46621966,-!p2@HOXB2!0.59!9.04!HOXB2;;chr10:64576105..64576133,-!p1@EGR2!0.59!6.78!EGR2;;chr16:8962202..8962222,-!p3@CARHSP1!0.59!5.65!CARHSP1;;chr3:25469724..25469773,+!p1@RARB!0.59!4.52!RARB;;chr7:44143738..44143760,+!p4@AEBP1!0.59!3.39!AEBP1;;chr8:72756637..72756664,-!p3@MSC!0.59!3.39!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.58!444.12!CEBPD;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.17!TBX2;;chr9:14083467..14083483,-!p4@NFIB!0.58!7.91!NFIB;;chr2:200323414..200323455,-!p1@SATB2!0.58!6.78!SATB2;;chr6:85474299..85474324,-!p1@TBX18!0.58!5.65!TBX18;;chr17:46675420..46675465,-!p3@HOXB6!0.58!3.39!HOXB6;;chr4:81104958..81104981,+!p5@PRDM8!0.58!3.39!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!0.58!3.39!PRDM8;;chr17:38256822..38256851,-!p1@NR1D1!0.57!25.99!NR1D1;;chr3:52001426..52001447,-!p3@PCBP4!0.57!9.04!PCBP4;;chr10:77161133..77161176,-!p3@ZNF503!0.57!6.78!ZNF503;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.52!HOXB2;;chr19:56111614..56111634,+!p3@ZNF524!0.57!4.52!ZNF524;;chr1:221052994..221053008,+!p6@HLX!0.57!3.39!HLX;;chr6:34204642..3420466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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg38.nobarcode.ctss.bed.gz
|id=FF:11365-117I6
|id=FF:11365-117I6
|is_a=EFO:0002091;;FF:0000174
|is_a=EFO:0002091;;FF:0000174
|is_obsolete=
|is_obsolete=
|library_id=CNhs11989
|library_id=CNhs11989
|library_id_phase_based=1:CNhs11989
|library_id_phase_based=2:CNhs11989
|microRNAs=
|microRNAs_nn=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GAGTGG.11365
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11365
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GAGTGG.11365
|name=Smooth Muscle Cells - Pulmonary Artery, donor2
|name=Smooth Muscle Cells - Pulmonary Artery, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
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|profile_hcage=CNhs11989,LSID836,release011,COMPLETED
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|profile_rnaseq=,,,
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=SPZ1:2.00953878858;ZNF423:1.71345722024;HOX{A5,B5}:1.55485358449;EBF1:1.54982145306;GZF1:1.40885539267;GLI1..3:1.40003247409;ZNF238:1.35127665531;GTF2A1,2:1.32723891724;TFAP4:1.22402598134;GCM1,2:1.16265870282;HES1:1.14858069801;ALX4:1.11159765965;TLX1..3_NFIC{dimer}:1.09887108182;EN1,2:1.05186106948;SMAD1..7,9:1.0300820587;NFE2L1:1.00606008312;HAND1,2:0.993560276962;RXRA_VDR{dimer}:0.939061435575;TAL1_TCF{3,4,12}:0.92539792387;NANOG{mouse}:0.878673445513;RXR{A,B,G}:0.787594717069;HSF1,2:0.764141021398;ZNF148:0.748896176142;TEAD1:0.742794749652;IKZF1:0.740726649759;TFAP2{A,C}:0.722329368207;ATF6:0.70871724094;AR:0.690053130212;PPARG:0.689393186445;TOPORS:0.681570885446;TFCP2:0.676169383744;HMX1:0.651519459283;UFEwm:0.642823454362;GFI1B:0.621550633539;ZIC1..3:0.611195281723;ESR1:0.60280054505;XCPE1{core}:0.590484576162;XBP1:0.558158271453;HIC1:0.544529567652;NKX2-2,8:0.494727896776;TBP:0.494515528527;LHX3,4:0.473040861173;GTF2I:0.45164744659;TFAP2B:0.45139962423;PBX1:0.43929523061;POU6F1:0.426868153605;SOX17:0.421705359514;TP53:0.400277551355;NFATC1..3:0.392461731726;SRF:0.392155652184;CDC5L:0.388183250224;ZBTB6:0.382916491847;MYBL2:0.380409067812;HOXA9_MEIS1:0.379712942763;ONECUT1,2:0.365588397642;PAX3,7:0.361735369146;NHLH1,2:0.359509182864;PATZ1:0.356183017803;PAX6:0.355072746647;VSX1,2:0.332807414903;NFE2L2:0.306505482535;MAFB:0.259466409269;TBX4,5:0.259265138442;HOX{A6,A7,B6,B7}:0.254914090508;PAX1,9:0.248867998464;SOX{8,9,10}:0.23477552974;STAT2,4,6:0.216825067619;REST:0.209991837844;NR3C1:0.200697874498;KLF4:0.19975954349;PAX5:0.198394450689;FOXL1:0.198361195062;FOXO1,3,4:0.191404198864;NR5A1,2:0.187148755375;HLF:0.179222570403;MTF1:0.176514215129;POU3F1..4:0.17175512288;MYFfamily:0.164534375855;HNF1A:0.154057780285;PRDM1:0.145043643318;RREB1:0.142738264623;NKX2-1,4:0.135323841323;BACH2:0.135021745045;ALX1:0.133484460794;FOS_FOS{B,L1}_JUN{B,D}:0.122979378011;MTE{core}:0.109819594116;HOX{A4,D4}:0.103919355352;TEF:0.0946279276584;NKX3-2:0.0862913014421;LEF1_TCF7_TCF7L1,2:0.0758106249437;bHLH_family:0.0585391895675;GATA6:0.0152587485144;POU2F1..3:-0.00757422622721;MAZ:-0.0129722122646;DBP:-0.016215917871;AHR_ARNT_ARNT2:-0.0317474471959;NKX3-1:-0.0375952157377;CRX:-0.0424769419531;RFX1:-0.0496806170609;LMO2:-0.0572412522021;NFIX:-0.0610773344527;MED-1{core}:-0.0615241073683;EVI1:-0.0711737040536;EGR1..3:-0.0766363571526;IRF1,2:-0.0797663318666;POU1F1:-0.0832712263199;NANOG:-0.0849505922047;YY1:-0.11247097308;SP1:-0.121663712725;FOXQ1:-0.131747989205;FOSL2:-0.132378964931;HIF1A:-0.141112126669;HNF4A_NR2F1,2:-0.147456732321;NR6A1:-0.195675633836;GFI1:-0.201215229617;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20140906499;ADNP_IRX_SIX_ZHX:-0.207291856979;CEBPA,B_DDIT3:-0.229524256803;GATA4:-0.236808762204;JUN:-0.249125370058;POU5F1:-0.259200398022;MZF1:-0.261822940535;MEF2{A,B,C,D}:-0.269379055413;NFKB1_REL_RELA:-0.295410350939;ESRRA:-0.306702483405;NFE2:-0.321259277444;SOX2:-0.351988852484;BREu{core}:-0.352275319217;ZFP161:-0.356319839139;PRRX1,2:-0.373862803212;ETS1,2:-0.378861810281;STAT5{A,B}:-0.386109479489;RUNX1..3:-0.403063122605;NFIL3:-0.410875556786;MYB:-0.41915064653;HBP1_HMGB_SSRP1_UBTF:-0.43960658449;EP300:-0.470245892654;DMAP1_NCOR{1,2}_SMARC:-0.474159773456;E2F1..5:-0.488484542368;NKX6-1,2:-0.493415951381;TGIF1:-0.494992169288;FOXP3:-0.508689718889;ATF2:-0.527174815481;SPIB:-0.544988500758;SOX5:-0.545433445301;PAX2:-0.560761985526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.574232631185;NR1H4:-0.585649213422;ZNF384:-0.588841616373;RORA:-0.628163023911;ARID5B:-0.629496223567;SNAI1..3:-0.637493388949;TLX2:-0.653581388336;SPI1:-0.654186202159;OCT4_SOX2{dimer}:-0.668014168788;ZNF143:-0.678160305805;FOX{I1,J2}:-0.691721605432;PAX8:-0.696939446699;TFDP1:-0.706528042;IRF7:-0.711438996127;PAX4:-0.736232963737;NRF1:-0.766179368331;BPTF:-0.801103588718;STAT1,3:-0.843666197813;ZEB1:-0.870392387872;ELK1,4_GABP{A,B1}:-0.881236796206;ATF4:-0.891058196887;FOX{D1,D2}:-0.897951580543;RFX2..5_RFXANK_RFXAP:-0.89863554661;NKX2-3_NKX2-5:-0.90027605527;CUX2:-0.916526272087;HMGA1,2:-0.929877058191;T:-0.958118931269;ATF5_CREB3:-0.96670915084;NFY{A,B,C}:-0.973664560279;AIRE:-0.984233689613;SREBF1,2:-1.00533702858;CREB1:-1.02229195549;FOX{F1,F2,J1}:-1.03518800323;FOXM1:-1.073619537;ZBTB16:-1.10640704102;ELF1,2,4:-1.11163358518;FOXP1:-1.12576746051;MYOD1:-1.16261223279;FOXA2:-1.19129534461;PITX1..3:-1.19319869036;FOXD3:-1.3097019514;FOXN1:-1.37889665606;PDX1:-1.5023820592;CDX1,2,4:-1.64502374871;IKZF2:-1.67747165888;RBPJ:-1.95705862966
|top_motifs=SPZ1:2.00953878858;ZNF423:1.71345722024;HOX{A5,B5}:1.55485358449;EBF1:1.54982145306;GZF1:1.40885539267;GLI1..3:1.40003247409;ZNF238:1.35127665531;GTF2A1,2:1.32723891724;TFAP4:1.22402598134;GCM1,2:1.16265870282;HES1:1.14858069801;ALX4:1.11159765965;TLX1..3_NFIC{dimer}:1.09887108182;EN1,2:1.05186106948;SMAD1..7,9:1.0300820587;NFE2L1:1.00606008312;HAND1,2:0.993560276962;RXRA_VDR{dimer}:0.939061435575;TAL1_TCF{3,4,12}:0.92539792387;NANOG{mouse}:0.878673445513;RXR{A,B,G}:0.787594717069;HSF1,2:0.764141021398;ZNF148:0.748896176142;TEAD1:0.742794749652;IKZF1:0.740726649759;TFAP2{A,C}:0.722329368207;ATF6:0.70871724094;AR:0.690053130212;PPARG:0.689393186445;TOPORS:0.681570885446;TFCP2:0.676169383744;HMX1:0.651519459283;UFEwm:0.642823454362;GFI1B:0.621550633539;ZIC1..3:0.611195281723;ESR1:0.60280054505;XCPE1{core}:0.590484576162;XBP1:0.558158271453;HIC1:0.544529567652;NKX2-2,8:0.494727896776;TBP:0.494515528527;LHX3,4:0.473040861173;GTF2I:0.45164744659;TFAP2B:0.45139962423;PBX1:0.43929523061;POU6F1:0.426868153605;SOX17:0.421705359514;TP53:0.400277551355;NFATC1..3:0.392461731726;SRF:0.392155652184;CDC5L:0.388183250224;ZBTB6:0.382916491847;MYBL2:0.380409067812;HOXA9_MEIS1:0.379712942763;ONECUT1,2:0.365588397642;PAX3,7:0.361735369146;NHLH1,2:0.359509182864;PATZ1:0.356183017803;PAX6:0.355072746647;VSX1,2:0.332807414903;NFE2L2:0.306505482535;MAFB:0.259466409269;TBX4,5:0.259265138442;HOX{A6,A7,B6,B7}:0.254914090508;PAX1,9:0.248867998464;SOX{8,9,10}:0.23477552974;STAT2,4,6:0.216825067619;REST:0.209991837844;NR3C1:0.200697874498;KLF4:0.19975954349;PAX5:0.198394450689;FOXL1:0.198361195062;FOXO1,3,4:0.191404198864;NR5A1,2:0.187148755375;HLF:0.179222570403;MTF1:0.176514215129;POU3F1..4:0.17175512288;MYFfamily:0.164534375855;HNF1A:0.154057780285;PRDM1:0.145043643318;RREB1:0.142738264623;NKX2-1,4:0.135323841323;BACH2:0.135021745045;ALX1:0.133484460794;FOS_FOS{B,L1}_JUN{B,D}:0.122979378011;MTE{core}:0.109819594116;HOX{A4,D4}:0.103919355352;TEF:0.0946279276584;NKX3-2:0.0862913014421;LEF1_TCF7_TCF7L1,2:0.0758106249437;bHLH_family:0.0585391895675;GATA6:0.0152587485144;POU2F1..3:-0.00757422622721;MAZ:-0.0129722122646;DBP:-0.016215917871;AHR_ARNT_ARNT2:-0.0317474471959;NKX3-1:-0.0375952157377;CRX:-0.0424769419531;RFX1:-0.0496806170609;LMO2:-0.0572412522021;NFIX:-0.0610773344527;MED-1{core}:-0.0615241073683;EVI1:-0.0711737040536;EGR1..3:-0.0766363571526;IRF1,2:-0.0797663318666;POU1F1:-0.0832712263199;NANOG:-0.0849505922047;YY1:-0.11247097308;SP1:-0.121663712725;FOXQ1:-0.131747989205;FOSL2:-0.132378964931;HIF1A:-0.141112126669;HNF4A_NR2F1,2:-0.147456732321;NR6A1:-0.195675633836;GFI1:-0.201215229617;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20140906499;ADNP_IRX_SIX_ZHX:-0.207291856979;CEBPA,B_DDIT3:-0.229524256803;GATA4:-0.236808762204;JUN:-0.249125370058;POU5F1:-0.259200398022;MZF1:-0.261822940535;MEF2{A,B,C,D}:-0.269379055413;NFKB1_REL_RELA:-0.295410350939;ESRRA:-0.306702483405;NFE2:-0.321259277444;SOX2:-0.351988852484;BREu{core}:-0.352275319217;ZFP161:-0.356319839139;PRRX1,2:-0.373862803212;ETS1,2:-0.378861810281;STAT5{A,B}:-0.386109479489;RUNX1..3:-0.403063122605;NFIL3:-0.410875556786;MYB:-0.41915064653;HBP1_HMGB_SSRP1_UBTF:-0.43960658449;EP300:-0.470245892654;DMAP1_NCOR{1,2}_SMARC:-0.474159773456;E2F1..5:-0.488484542368;NKX6-1,2:-0.493415951381;TGIF1:-0.494992169288;FOXP3:-0.508689718889;ATF2:-0.527174815481;SPIB:-0.544988500758;SOX5:-0.545433445301;PAX2:-0.560761985526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.574232631185;NR1H4:-0.585649213422;ZNF384:-0.588841616373;RORA:-0.628163023911;ARID5B:-0.629496223567;SNAI1..3:-0.637493388949;TLX2:-0.653581388336;SPI1:-0.654186202159;OCT4_SOX2{dimer}:-0.668014168788;ZNF143:-0.678160305805;FOX{I1,J2}:-0.691721605432;PAX8:-0.696939446699;TFDP1:-0.706528042;IRF7:-0.711438996127;PAX4:-0.736232963737;NRF1:-0.766179368331;BPTF:-0.801103588718;STAT1,3:-0.843666197813;ZEB1:-0.870392387872;ELK1,4_GABP{A,B1}:-0.881236796206;ATF4:-0.891058196887;FOX{D1,D2}:-0.897951580543;RFX2..5_RFXANK_RFXAP:-0.89863554661;NKX2-3_NKX2-5:-0.90027605527;CUX2:-0.916526272087;HMGA1,2:-0.929877058191;T:-0.958118931269;ATF5_CREB3:-0.96670915084;NFY{A,B,C}:-0.973664560279;AIRE:-0.984233689613;SREBF1,2:-1.00533702858;CREB1:-1.02229195549;FOX{F1,F2,J1}:-1.03518800323;FOXM1:-1.073619537;ZBTB16:-1.10640704102;ELF1,2,4:-1.11163358518;FOXP1:-1.12576746051;MYOD1:-1.16261223279;FOXA2:-1.19129534461;PITX1..3:-1.19319869036;FOXD3:-1.3097019514;FOXN1:-1.37889665606;PDX1:-1.5023820592;CDX1,2,4:-1.64502374871;IKZF2:-1.67747165888;RBPJ:-1.95705862966
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11365-117I6;search_select_hide=table117:FF:11365-117I6
}}
}}

Latest revision as of 17:55, 4 June 2020

Name:Smooth Muscle Cells - Pulmonary Artery, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11989
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepulmonary artery
dev stage41 years old adult
sexfemale
age41
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1346
catalog numberCA352-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005726
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11989 CAGE DRX008499 DRR009371
Accession ID Hg19

Library idBAMCTSS
CNhs11989 DRZ000796 DRZ002181
Accession ID Hg38

Library idBAMCTSS
CNhs11989 DRZ012146 DRZ013531
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005726
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.GAGTGG sRNA-Seq DRX037265 DRR041631
Accession ID Hg19

Library idBAMCTSS
SRhi10015.GAGTGG DRZ007273


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00518
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.208
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.241
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.303
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.113
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.494
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.699
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.831
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.393
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.128
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.513
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.642
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.391
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.642
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.642
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.772
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11989

Jaspar motifP-value
MA0002.20.716
MA0003.10.267
MA0004.10.648
MA0006.10.194
MA0007.10.114
MA0009.10.439
MA0014.10.862
MA0017.10.879
MA0018.24.69563e-6
MA0019.10.734
MA0024.10.00227
MA0025.10.027
MA0027.10.655
MA0028.18.51221e-5
MA0029.10.274
MA0030.10.0611
MA0031.10.0489
MA0035.20.368
MA0038.10.025
MA0039.20.357
MA0040.10.52
MA0041.10.474
MA0042.10.838
MA0043.11.54241e-5
MA0046.10.459
MA0047.20.735
MA0048.10.56
MA0050.10.827
MA0051.10.886
MA0052.10.531
MA0055.10.755
MA0057.10.0785
MA0058.10.344
MA0059.10.821
MA0060.13.50974e-4
MA0061.10.848
MA0062.21.01147e-10
MA0065.20.374
MA0066.10.766
MA0067.10.0367
MA0068.10.851
MA0069.10.758
MA0070.10.974
MA0071.10.528
MA0072.10.938
MA0073.10.967
MA0074.10.153
MA0076.11.12091e-5
MA0077.10.579
MA0078.10.361
MA0079.20.87
MA0080.22.42816e-7
MA0081.10.0058
MA0083.10.031
MA0084.10.415
MA0087.10.516
MA0088.10.509
MA0090.10.038
MA0091.10.0894
MA0092.10.119
MA0093.10.504
MA0099.20.0114
MA0100.10.0955
MA0101.10.155
MA0102.20.305
MA0103.10.502
MA0104.20.243
MA0105.10.326
MA0106.10.179
MA0107.10.392
MA0108.20.00613
MA0111.10.385
MA0112.20.00541
MA0113.10.325
MA0114.10.936
MA0115.10.974
MA0116.10.0915
MA0117.10.174
MA0119.10.153
MA0122.10.997
MA0124.10.225
MA0125.10.465
MA0131.10.076
MA0135.10.259
MA0136.14.31726e-11
MA0137.20.932
MA0138.20.537
MA0139.10.963
MA0140.10.252
MA0141.10.223
MA0142.10.525
MA0143.10.38
MA0144.10.502
MA0145.10.175
MA0146.10.174
MA0147.10.537
MA0148.10.451
MA0149.10.726
MA0150.10.959
MA0152.10.00814
MA0153.10.173
MA0154.10.181
MA0155.10.0664
MA0156.17.36409e-6
MA0157.10.977
MA0159.10.48
MA0160.10.83
MA0162.10.166
MA0163.10.0184
MA0164.10.705
MA0258.10.105
MA0259.10.497



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11989

Novel motifP-value
10.665
100.868
1000.884
1010.824
1020.648
1030.294
1040.583
1050.918
1060.0229
1070.0165
1080.472
1090.272
110.159
1100.305
1110.647
1120.407
1130.115
1140.195
1150.203
1160.0462
1170.937
1180.739
1190.45
120.795
1200.755
1210.837
1220.218
1230.141
1240.6
1250.872
1260.597
1270.709
1280.0557
1290.974
130.416
1300.211
1310.626
1320.394
1330.399
1340.903
1350.357
1360.653
1370.615
1380.444
1390.263
140.728
1400.535
1410.472
1420.234
1430.268
1440.209
1450.0965
1460.182
1470.206
1480.892
1490.0527
150.998
1500.339
1510.479
1520.0534
1530.648
1540.756
1550.0331
1560.426
1570.621
1580.0145
1590.276
160.0582
1600.0747
1610.718
1620.151
1630.995
1640.501
1650.995
1660.469
1670.719
1680.488
1690.0433
170.184
180.0992
190.0571
20.162
200.264
210.33
220.121
230.104
240.775
250.168
260.0143
270.135
280.22
290.849
30.544
300.165
310.419
326.46538e-9
330.821
340.343
350.702
360.126
370.325
380.739
390.172
40.931
400.755
410.988
420.832
430.217
440.434
450.355
460.0904
470.667
480.303
490.372
50.688
500.455
510.323
520.53
530.467
540.4
550.0896
560.508
570.813
580.562
590.0282
60.826
600.405
610.409
620.846
630.236
640.507
650.139
660.401
670.652
680.155
690.401
70.513
700.00742
710.263
720.876
730.0827
740.562
750.7
760.608
770.0236
780.406
790.00497
80.0374
800.387
810.405
820.657
830.688
840.712
850.0224
860.825
870.212
880.183
890.0577
90.292
900.877
910.275
920.166
930.943
940.822
950.623
960.771
970.493
980.766
990.00449



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11989


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002591 (smooth muscle cell of the pulmonary artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002012 (pulmonary artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0008886 (pulmonary vascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000174 (human smooth muscle cell of pulmonary artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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