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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005613
|DRA_sample_Accession=CAGE@SAMD00005613
|accession_numbers=CAGE;DRX008245;DRR009117;DRZ000542;DRZ001927
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005613
|accession_numbers=CAGE;DRX008245;DRR009117;DRZ000542;DRZ001927;DRZ011892;DRZ013277
|accession_numbers_RNASeq=sRNA-Seq;DRX037178;DRR041544;DRZ007186
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def="A fibroblast from cardiac tissue." [GOC:tfm]
|def="A fibroblast from cardiac tissue." [GOC:tfm]
|expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.15!140.35!NKX2-5;;chr5:172662303..172662320,-!p2@NKX2-5!1.80!61.42!NKX2-5;;chr20:30433396..30433414,-!p1@FOXS1!1.59!38.23!FOXS1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!37.49!ZBED1;;chr8:11561684..11561751,+!p1@GATA4!1.54!33.79!GATA4;;chr11:61520075..61520136,+!p1@C11orf9!1.44!55.25!C11orf9;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!128.27!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.43!63.39!FOXC2;;chr8:55370487..55370503,+!p1@SOX17!1.41!24.42!SOX17;;chr17:41739283..41739297,-!p1@MEOX1!1.28!18.25!MEOX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!21.95!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!1.13!57.23!FOXD1;;chr5:172662230..172662241,-!p3@NKX2-5!1.11!11.84!NKX2-5;;chr1:151032860..151032918,+!p1@MLLT11!1.10!137.89!MLLT11;;chr21:38071430..38071456,+!p1@SIM2!1.10!11.59!SIM2;;chr8:72756063..72756125,-!p1@MSC!1.08!22.20!MSC;;chr1:935467..935484,-!p1@HES4!1.06!47.36!HES4;;chr7:1577899..1577943,+!p3@MAFK!1.06!10.36!MAFK;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.63!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.09!GATA6;;chr5:72744445..72744466,-!p2@FOXD1!1.02!16.03!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!1.02!16.03!TFAP2A;;chr8:72756267..72756296,-!p4@MSC!1.02!14.06!MSC;;chr19:58400344..58400364,-!p2@ZNF814!1.01!13.57!ZNF814;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.13!HAND2;;chr1:151032922..151032951,+!p2@MLLT11!0.98!14.55!MLLT11;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.63!TBX20;;chr8:72756213..72756243,-!p5@MSC!0.95!10.36!MSC;;chr5:2751762..2751784,-!p1@IRX2!0.94!7.65!IRX2;;chr8:72756667..72756736,-!p2@MSC!0.93!11.84!MSC;;chr8:72756637..72756664,-!p3@MSC!0.93!8.63!MSC;;chr15:67418119..67418162,+!p5@SMAD3!0.93!8.39!SMAD3;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.40!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.56!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.91!7.15!TCF21;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.91!FOXC2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.91!PKNOX2;;chr18:19749386..19749404,+!p2@GATA6!0.88!9.62!GATA6;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.65!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!0.85!7.89!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.75!NCOR2;;chr12:80085061..80085119,-!p6@PAWR!0.83!9.62!PAWR;;chr1:935398..935465,-!p2@HES4!0.80!11.59!HES4;;chr12:125002827..125002855,-!p5@NCOR2!0.80!7.89!NCOR2;;chr8:72756023..72756055,-!p6@MSC!0.80!6.66!MSC;;chr8:23564065..23564087,-!p1@NKX2-6!0.79!5.18!NKX2-6;;chr12:124873852..124873881,-!p3@NCOR2!0.78!33.30!NCOR2;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.34!CREB3;;chr6:126240380..126240430,+!p2@NCOA7!0.75!12.83!NCOA7;;chr6:19837592..19837621,+!p1@ID4!0.74!30.09!ID4;;chr21:38071403..38071428,+!p2@SIM2!0.74!4.44!SIM2;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.71!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.72!5.67!NCOA7;;chr5:72744562..72744573,-!p3@FOXD1!0.72!5.43!FOXD1;;chr8:72755987..72756002,-!p7@MSC!0.72!4.19!MSC;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.19!FOXC2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.71!335.96!TAX1BP3;;chr1:151032782..151032801,+!p4@MLLT11!0.71!8.88!MLLT11;;chr7:1577111..1577132,+!p4@MAFK!0.71!4.69!MAFK;;chr16:29819446..29819471,+!p9@MAZ!0.70!13.07!MAZ;;chr7:19157248..19157268,-!p1@TWIST1!0.70!12.09!TWIST1;;chr1:151032739..151032748,+!p6@MLLT11!0.70!5.18!MLLT11;;chr20:48599506..48599526,+!p1@SNAI1!0.69!28.37!SNAI1;;chr16:86601052..86601066,+!p4@FOXC2!0.69!3.95!FOXC2;;chr8:72756380..72756427,-!p8@MSC!0.69!3.95!MSC;;chr11:46333934..46333963,+!p5@CREB3L1!0.69!3.95!CREB3L1;;chr12:80085120..80085156,-!p14@PAWR!0.69!3.95!PAWR;;chr16:67881588..67881612,-!p2@CENPT!0.68!5.43!CENPT;;chr3:71630980..71631110,-!p3@FOXP1!0.67!14.55!FOXP1;;chr11:65667884..65667895,-!p2@FOSL1!0.66!15.79!FOSL1;;chr2:239756671..239756732,+!p1@TWIST2!0.66!13.07!TWIST2;;chr7:150945754..150945789,-!p2@SMARCD3!0.65!12.09!SMARCD3;;chr15:67418177..67418204,+!p9@SMAD3!0.65!3.45!SMAD3;;chr16:86600458..86600461,+!p3@FOXC2!0.65!3.45!FOXC2;;chr16:29819403..29819442,+!p5@MAZ!0.63!32.07!MAZ;;chr19:58400372..58400411,-!p1@ZNF814!0.63!19.73!ZNF814;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.37!TWIST1;;chr8:23540441..23540466,-!p1@NKX3-1!0.63!7.15!NKX3-1;;chr9:35732514..35732530,+!p5@CREB3!0.63!4.93!CREB3;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.95!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.62!7.89!GLI2;;chr12:66218183..66218209,+!p4@HMGA2!0.62!6.66!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.62!6.17!GATA6;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.67!GLI2;;chr1:170632285..170632309,+!p1@PRRX1!0.62!3.70!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!0.62!3.21!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!0.61!4.44!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!0.61!3.45!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.60!37.25!SOX9;;chr12:66218212..66218244,+!p5@HMGA2!0.60!4.69!HMGA2;;chr15:67391010..67391046,+!p13@SMAD3!0.60!2.96!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.60!2.96!NFE2L1;;chr8:145159846..145159889,+!p6@MAF1!0.59!4.44!MAF1;;chr15:83953397..83953425,-!p1@BNC1!0.59!3.45!BNC1;;chr1:935496..935509,-!p3@HES4!0.58!4.69!HES4;;chr19:42759266..42759290,-!p1@ERF!0.57!108.04!ERF;;chr1:170633262..170633285,+!p3@PRRX1!0.57!3.21!PRRX1;;chr6:126070769..126070801,+!p1@HEY2!0.57!3.21!HEY2;;chr19:16435705..16435726,+!p3@KLF2!0.57!2.71!KLF2;;chr12:125002861..125002894,-!p7@NCOR2!0.56!4.19!NCOR2;;chr1:23885981..23886002,-!p1@ID3!0.55!565.86!ID3;;chr20:42543441..42543497,+!p1@TOX2!0.55!14.06!TOX2;;chr19:56152332..56152347,+!p4@ZNF580!0.55!6.66!ZNF580;;chr3:168864315..168864339,-!p2@MECOM!0.55!4.69!MECOM;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.19!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!0.54!3.45!NFATC2;;chr1:170633058..170633084,+!p5@PRRX1!0.54!2.47!PRRX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.54!2.47!PKNOX2;;chr11:46332679..46332695,+!p12@CREB3L1!0.54!2.47!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.47!CREB3L1;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.47!ZNF668;;chr4:2263809..2263854,-!p1@MXD4!0.53!118.89!MXD4;;chr9:35732592..35732640,+!p1@CREB3!0.53!40.21!CREB3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.53!37.74!ZC3H12A;;chr19:57946684..57946723,+!p1@ZNF749!0.53!33.55!ZNF749;;chr2:74229812..74229867,+!p1@TET3!0.53!7.15!TET3;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.66!PAWR;;chr17:1959369..1959388,+!p2@HIC1!0.52!7.40!HIC1;;chr1:151032833..151032850,+!p3@MLLT11!0.52!6.17!MLLT11;;chr3:52001396..52001425,-!p4@PCBP4!0.52!4.69!PCBP4;;chr17:41623009..41623053,-!p4@ETV4!0.52!4.19!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.52!2.96!NCOA7;;chr19:49865646..49865718,-!p1@TEAD2!0.51!24.67!TEAD2;;chr3:141087393..141087426,+!p3@ZBTB38!0.51!11.10!ZBTB38;;chr17:38498594..38498661,+!p2@RARA!0.51!9.37!RARA;;chr15:61521417..61521460,-!p2@RORA!0.51!5.92!RORA;;chr7:150946015..150946070,-!p3@SMARCD3!0.51!5.67!SMARCD3;;chr12:125002739..125002756,-!p6@NCOR2!0.51!3.70!NCOR2;;chr15:61521462..61521482,-!p4@RORA!0.51!2.22!RORA;;chr17:38501500..38501517,+!p13@RARA!0.51!2.22!RARA;;chr17:46128217..46128243,+!p11@NFE2L1!0.51!2.22!NFE2L1;;chr21:38071462..38071474,+!p3@SIM2!0.51!2.22!SIM2;;chr5:3595977..3595999,+!p1@IRX1!0.51!2.22!IRX1;;chr8:72756194..72756208,-!p9@MSC!0.51!2.22!MSC;;chr3:193854202..193854232,+!p2@HES1!0.51!2.22!HES1;;chr17:1958388..1958404,+!p1@HIC1!0.50!17.76!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.50!12.58!DRAP1;;chr19:1652555..1652568,-!p2@TCF3!0.50!11.10!TCF3;;chr17:38498510..38498540,+!p7@RARA!0.50!2.71!RARA;;chr1:935519..935532,-!p4@HES4!0.50!2.71!HES4;;chr15:37392534..37392562,-!p10@MEIS2!0.50!2.47!MEIS2;;chr12:115121962..115121987,-!p1@TBX3!0.49!23.19!TBX3;;chr19:47922750..47922795,-!p1@MEIS3!0.49!3.95!MEIS3;;chr1:8934931..8934947,-!p4@ENO1!0.48!8.39!ENO1;;chr11:65430554..65430579,-!p3@RELA!0.48!6.41!RELA;;chr19:45261992..45262010,+!p9@BCL3!0.48!3.21!BCL3;;chr6:43140149..43140177,+!p8@SRF!0.48!2.22!SRF;;chr16:29817841..29817865,+!p1@MAZ!0.47!56.98!MAZ;;chr19:52074502..52074587,+!p1@ZNF175!0.47!9.13!ZNF175;;chr2:85980951..85981004,+!p1@ATOH8!0.47!3.70!ATOH8;;chr6:45390300..45390335,+!p4@RUNX2!0.47!3.45!RUNX2;;chr12:80084137..80084165,-!p10@PAWR!0.47!2.71!PAWR;;chr12:66218923..66218934,+!p14@HMGA2!0.47!1.97!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.47!1.97!PAWR;;chr19:47523058..47523114,+!p1@NPAS1!0.47!1.97!NPAS1;;chr5:3595934..3595957,+!p2@IRX1!0.47!1.97!IRX1;;chr5:72744336..72744359,-!p5@FOXD1!0.47!1.97!FOXD1;;chr8:40755333..40755352,-!p1@ZMAT4!0.47!1.97!ZMAT4;;chr8:72756251..72756262,-!p12@MSC!0.47!1.97!MSC;;chr16:67881647..67881663,-!p3@CENPT!0.47!1.97!CENPT;;chr16:86612320..86612394,+!p1@FOXL1!0.47!1.97!FOXL1;;chr7:4815238..4815327,+!p1@KIAA0415!0.46!56.49!AP5Z1;;chr12:57504975..57505019,-!p2@STAT6!0.46!10.11!STAT6;;chr1:23886132..23886156,-!p2@ID3!0.46!2.22!ID3;;chr7:150974206..150974255,-!p1@SMARCD3!0.45!15.29!SMARCD3;;chr3:52001426..52001447,-!p3@PCBP4!0.45!6.66!PCBP4;;chr2:239756739..239756755,+!p2@TWIST2!0.45!3.70!TWIST2;;chr1:221053049..221053075,+!p3@HLX!0.45!3.70!HLX;;chr6:43140095..43140145,+!p5@SRF!0.45!2.47!SRF;;chr8:116681108..116681120,-!p9@TRPS1!0.45!2.47!TRPS1;;chr8:49833948..49833973,-!p2@SNAI2!0.44!15.54!SNAI2;;chr2:85981222..85981259,+!p2@ATOH8!0.44!3.45!ATOH8;;chr12:80084279..80084293,-!p8@PAWR!0.44!3.45!PAWR;;chr12:66218378..66218401,+!p6@HMGA2!0.44!3.21!HMGA2;;chr12:125003087..125003141,-!p4@NCOR2!0.44!2.47!NCOR2;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.47!HMGA2;;chr5:139492456..139492489,+!p7@PURA!0.44!1.73!PURA;;chr5:92918768..92918783,+!p8@NR2F1!0.44!1.73!NR2F1;;chr6:10412576..10412599,-!p5@TFAP2A!0.44!1.73!TFAP2A;;chr7:150945663..150945692,-!p5@SMARCD3!0.44!1.73!SMARCD3;;chr7:150945865..150945896,-!p4@SMARCD3!0.44!1.73!SMARCD3;;chr22:19748231..19748317,+!p1@TBX1!0.44!1.73!TBX1;;chr18:19749504..19749515,+!p5@GATA6!0.44!1.73!GATA6;;chr19:56152361..56152434,+!p1@ZNF580!0.43!65.12!ZNF580;;chr5:92918919..92918942,+!p1@NR2F1!0.43!10.36!NR2F1;;chr2:60780607..60780624,-!p2@BCL11A!0.43!6.91!BCL11A;;chr18:3449821..3449860,+!p7@TGIF1!0.43!3.70!TGIF1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.70!TBX18;;chr3:170076314.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor3.CNhs12027.11417-118F4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor3.CNhs12027.11417-118F4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor3.CNhs12027.11417-118F4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor3.CNhs12027.11417-118F4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor3.CNhs12027.11417-118F4.hg38.nobarcode.ctss.bed.gz
|id=FF:11417-118F4
|id=FF:11417-118F4
|is_a=EFO:0002091;;FF:0000059
|is_a=EFO:0002091;;FF:0000059
|is_obsolete=
|is_obsolete=
|library_id=CNhs12027
|library_id=CNhs12027
|library_id_phase_based=1:CNhs12027
|library_id_phase_based=2:CNhs12027
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11417
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.GTGGCC.11417
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11417
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.GTGGCC.11417
|name=Fibroblast - Cardiac, donor3
|name=Fibroblast - Cardiac, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12027,LSID837,release011,COMPLETED
|profile_hcage=CNhs12027,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
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|sample_age=embryo 20week
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=GLI1..3:2.01050704182;RXRA_VDR{dimer}:1.99507527934;RXR{A,B,G}:1.75754693839;UFEwm:1.7122044654;ZNF423:1.64597267893;GTF2A1,2:1.60056060899;PPARG:1.48237385889;HOX{A5,B5}:1.43286524982;ZIC1..3:1.40091534557;IKZF1:1.38420142461;ESR1:1.24379241957;TFCP2:1.21255809468;EBF1:1.19490429728;HES1:1.13074981946;GCM1,2:1.07960831747;TFAP4:1.05397008792;MAFB:1.03831074695;XCPE1{core}:0.993655937934;SRF:0.978131027014;TAL1_TCF{3,4,12}:0.976273881342;ALX4:0.965034002877;HMGA1,2:0.95926617334;NR3C1:0.949962387844;EN1,2:0.945384030951;TBX4,5:0.939248523136;NFE2L1:0.937694040795;TLX1..3_NFIC{dimer}:0.907885050388;HMX1:0.906698112212;TEAD1:0.87976567802;TP53:0.87818918416;ZNF148:0.873854126137;TFAP2B:0.872634385446;HIF1A:0.870392280652;HSF1,2:0.804307069837;NR6A1:0.794543416854;ONECUT1,2:0.754742299202;TFAP2{A,C}:0.752384401317;NKX3-1:0.735317784316;ZBTB6:0.73111302122;SMAD1..7,9:0.713560618186;FOXL1:0.662425262941;NKX3-2:0.642850826499;TBP:0.588457675177;EVI1:0.554750191178;KLF4:0.553918487758;REST:0.549775045747;bHLH_family:0.518346750727;NKX2-2,8:0.51683879204;SP1:0.452775657442;MTF1:0.42823312187;NFATC1..3:0.418284037992;GTF2I:0.41538680354;XBP1:0.406225726808;HIC1:0.377638955212;MTE{core}:0.373715699862;MAZ:0.338462437115;ATF6:0.33233730812;PAX5:0.322205279416;NANOG{mouse}:0.32112471196;HAND1,2:0.288852434757;GZF1:0.283376525514;AR:0.283066818646;NFE2L2:0.249816157818;ZNF384:0.239342118204;SOX17:0.227323449689;TOPORS:0.220255524059;ZNF143:0.192924634471;BACH2:0.187412912176;ELK1,4_GABP{A,B1}:0.159834996074;HLF:0.155153811265;POU3F1..4:0.143214292253;ESRRA:0.131512301512;SOX2:0.127827153236;RREB1:0.120429995904;SOX{8,9,10}:0.116121708481;DBP:0.1159786289;PATZ1:0.089673484737;AIRE:0.0744155506416;FOS_FOS{B,L1}_JUN{B,D}:0.055374558177;PAX1,9:0.0391423475199;MYBL2:0.0326395612484;PRDM1:0.0186510650042;SPZ1:-0.0138378238987;RFX1:-0.026332957676;GATA4:-0.027743439014;YY1:-0.0380050056843;EGR1..3:-0.0674985342183;ZFP161:-0.0704346380478;MEF2{A,B,C,D}:-0.0725919120574;NR5A1,2:-0.0859535075108;FOSL2:-0.0877182594852;EP300:-0.0960949874795;MZF1:-0.103500934666;LMO2:-0.118531019212;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.121114759338;ARID5B:-0.121216058257;GFI1B:-0.127367441138;PAX2:-0.138699851604;NFE2:-0.150132544061;ZNF238:-0.154830404399;NFKB1_REL_RELA:-0.161242182939;HNF1A:-0.180660956557;FOX{I1,J2}:-0.190523115249;LHX3,4:-0.191249809779;MYOD1:-0.195900803714;HOXA9_MEIS1:-0.218522307238;LEF1_TCF7_TCF7L1,2:-0.224977997506;ADNP_IRX_SIX_ZHX:-0.23825235401;POU2F1..3:-0.266420740714;NHLH1,2:-0.268027072603;STAT5{A,B}:-0.280536924552;GATA6:-0.289815389115;TEF:-0.296801480117;PAX8:-0.30090914164;NRF1:-0.301832250369;MYFfamily:-0.308037069973;SREBF1,2:-0.350079581029;RUNX1..3:-0.350546572627;SNAI1..3:-0.353691393682;CDC5L:-0.370366536298;MED-1{core}:-0.377327247827;TFDP1:-0.380770262083;NKX2-1,4:-0.381153947253;POU6F1:-0.400670351231;STAT2,4,6:-0.403170998989;MYB:-0.417952524655;NFIL3:-0.424770113446;ZEB1:-0.438119360712;HNF4A_NR2F1,2:-0.445699447043;ETS1,2:-0.461648630739;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477397230934;POU1F1:-0.480480939706;SPI1:-0.489516973379;POU5F1:-0.515886925008;NFY{A,B,C}:-0.519592305974;ELF1,2,4:-0.536869366722;IRF7:-0.546021982861;FOXA2:-0.547436751089;JUN:-0.562104464563;IRF1,2:-0.565914056397;GFI1:-0.600252576902;SPIB:-0.604833488853;FOX{F1,F2,J1}:-0.607442575916;CEBPA,B_DDIT3:-0.667611296464;PAX3,7:-0.670417371163;FOXQ1:-0.683453649527;HOX{A4,D4}:-0.711363262913;HOX{A6,A7,B6,B7}:-0.715469653558;PDX1:-0.739351408368;PRRX1,2:-0.756981646001;E2F1..5:-0.778410771547;ATF2:-0.791087215603;CRX:-0.791668934604;TLX2:-0.794636643005;PITX1..3:-0.818847941494;ATF5_CREB3:-0.845568516454;PBX1:-0.855688020622;FOX{D1,D2}:-0.865229400783;FOXM1:-0.879537834473;NFIX:-0.894756567643;CREB1:-0.895273347928;ATF4:-0.919713992705;HBP1_HMGB_SSRP1_UBTF:-0.973549666056;OCT4_SOX2{dimer}:-0.988928530347;SOX5:-1.00830509242;DMAP1_NCOR{1,2}_SMARC:-1.0435579817;STAT1,3:-1.04912174609;CUX2:-1.05744517776;NKX2-3_NKX2-5:-1.06290846796;AHR_ARNT_ARNT2:-1.06996023918;T:-1.07009770913;PAX6:-1.07563863563;NR1H4:-1.12512611619;ZBTB16:-1.17014337989;FOXD3:-1.19013915809;RBPJ:-1.19097055514;PAX4:-1.19384494668;RORA:-1.2397728279;VSX1,2:-1.26916388993;FOXP3:-1.30928482204;TGIF1:-1.31325572488;FOXP1:-1.33086638617;ALX1:-1.33725675621;FOXO1,3,4:-1.3420200919;NANOG:-1.35423498877;BPTF:-1.35610544715;IKZF2:-1.38136769025;BREu{core}:-1.42107689092;FOXN1:-1.42252449507;RFX2..5_RFXANK_RFXAP:-1.5490344851;NKX6-1,2:-1.65887207642;CDX1,2,4:-1.67380376465
|top_motifs=GLI1..3:2.01050704182;RXRA_VDR{dimer}:1.99507527934;RXR{A,B,G}:1.75754693839;UFEwm:1.7122044654;ZNF423:1.64597267893;GTF2A1,2:1.60056060899;PPARG:1.48237385889;HOX{A5,B5}:1.43286524982;ZIC1..3:1.40091534557;IKZF1:1.38420142461;ESR1:1.24379241957;TFCP2:1.21255809468;EBF1:1.19490429728;HES1:1.13074981946;GCM1,2:1.07960831747;TFAP4:1.05397008792;MAFB:1.03831074695;XCPE1{core}:0.993655937934;SRF:0.978131027014;TAL1_TCF{3,4,12}:0.976273881342;ALX4:0.965034002877;HMGA1,2:0.95926617334;NR3C1:0.949962387844;EN1,2:0.945384030951;TBX4,5:0.939248523136;NFE2L1:0.937694040795;TLX1..3_NFIC{dimer}:0.907885050388;HMX1:0.906698112212;TEAD1:0.87976567802;TP53:0.87818918416;ZNF148:0.873854126137;TFAP2B:0.872634385446;HIF1A:0.870392280652;HSF1,2:0.804307069837;NR6A1:0.794543416854;ONECUT1,2:0.754742299202;TFAP2{A,C}:0.752384401317;NKX3-1:0.735317784316;ZBTB6:0.73111302122;SMAD1..7,9:0.713560618186;FOXL1:0.662425262941;NKX3-2:0.642850826499;TBP:0.588457675177;EVI1:0.554750191178;KLF4:0.553918487758;REST:0.549775045747;bHLH_family:0.518346750727;NKX2-2,8:0.51683879204;SP1:0.452775657442;MTF1:0.42823312187;NFATC1..3:0.418284037992;GTF2I:0.41538680354;XBP1:0.406225726808;HIC1:0.377638955212;MTE{core}:0.373715699862;MAZ:0.338462437115;ATF6:0.33233730812;PAX5:0.322205279416;NANOG{mouse}:0.32112471196;HAND1,2:0.288852434757;GZF1:0.283376525514;AR:0.283066818646;NFE2L2:0.249816157818;ZNF384:0.239342118204;SOX17:0.227323449689;TOPORS:0.220255524059;ZNF143:0.192924634471;BACH2:0.187412912176;ELK1,4_GABP{A,B1}:0.159834996074;HLF:0.155153811265;POU3F1..4:0.143214292253;ESRRA:0.131512301512;SOX2:0.127827153236;RREB1:0.120429995904;SOX{8,9,10}:0.116121708481;DBP:0.1159786289;PATZ1:0.089673484737;AIRE:0.0744155506416;FOS_FOS{B,L1}_JUN{B,D}:0.055374558177;PAX1,9:0.0391423475199;MYBL2:0.0326395612484;PRDM1:0.0186510650042;SPZ1:-0.0138378238987;RFX1:-0.026332957676;GATA4:-0.027743439014;YY1:-0.0380050056843;EGR1..3:-0.0674985342183;ZFP161:-0.0704346380478;MEF2{A,B,C,D}:-0.0725919120574;NR5A1,2:-0.0859535075108;FOSL2:-0.0877182594852;EP300:-0.0960949874795;MZF1:-0.103500934666;LMO2:-0.118531019212;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.121114759338;ARID5B:-0.121216058257;GFI1B:-0.127367441138;PAX2:-0.138699851604;NFE2:-0.150132544061;ZNF238:-0.154830404399;NFKB1_REL_RELA:-0.161242182939;HNF1A:-0.180660956557;FOX{I1,J2}:-0.190523115249;LHX3,4:-0.191249809779;MYOD1:-0.195900803714;HOXA9_MEIS1:-0.218522307238;LEF1_TCF7_TCF7L1,2:-0.224977997506;ADNP_IRX_SIX_ZHX:-0.23825235401;POU2F1..3:-0.266420740714;NHLH1,2:-0.268027072603;STAT5{A,B}:-0.280536924552;GATA6:-0.289815389115;TEF:-0.296801480117;PAX8:-0.30090914164;NRF1:-0.301832250369;MYFfamily:-0.308037069973;SREBF1,2:-0.350079581029;RUNX1..3:-0.350546572627;SNAI1..3:-0.353691393682;CDC5L:-0.370366536298;MED-1{core}:-0.377327247827;TFDP1:-0.380770262083;NKX2-1,4:-0.381153947253;POU6F1:-0.400670351231;STAT2,4,6:-0.403170998989;MYB:-0.417952524655;NFIL3:-0.424770113446;ZEB1:-0.438119360712;HNF4A_NR2F1,2:-0.445699447043;ETS1,2:-0.461648630739;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477397230934;POU1F1:-0.480480939706;SPI1:-0.489516973379;POU5F1:-0.515886925008;NFY{A,B,C}:-0.519592305974;ELF1,2,4:-0.536869366722;IRF7:-0.546021982861;FOXA2:-0.547436751089;JUN:-0.562104464563;IRF1,2:-0.565914056397;GFI1:-0.600252576902;SPIB:-0.604833488853;FOX{F1,F2,J1}:-0.607442575916;CEBPA,B_DDIT3:-0.667611296464;PAX3,7:-0.670417371163;FOXQ1:-0.683453649527;HOX{A4,D4}:-0.711363262913;HOX{A6,A7,B6,B7}:-0.715469653558;PDX1:-0.739351408368;PRRX1,2:-0.756981646001;E2F1..5:-0.778410771547;ATF2:-0.791087215603;CRX:-0.791668934604;TLX2:-0.794636643005;PITX1..3:-0.818847941494;ATF5_CREB3:-0.845568516454;PBX1:-0.855688020622;FOX{D1,D2}:-0.865229400783;FOXM1:-0.879537834473;NFIX:-0.894756567643;CREB1:-0.895273347928;ATF4:-0.919713992705;HBP1_HMGB_SSRP1_UBTF:-0.973549666056;OCT4_SOX2{dimer}:-0.988928530347;SOX5:-1.00830509242;DMAP1_NCOR{1,2}_SMARC:-1.0435579817;STAT1,3:-1.04912174609;CUX2:-1.05744517776;NKX2-3_NKX2-5:-1.06290846796;AHR_ARNT_ARNT2:-1.06996023918;T:-1.07009770913;PAX6:-1.07563863563;NR1H4:-1.12512611619;ZBTB16:-1.17014337989;FOXD3:-1.19013915809;RBPJ:-1.19097055514;PAX4:-1.19384494668;RORA:-1.2397728279;VSX1,2:-1.26916388993;FOXP3:-1.30928482204;TGIF1:-1.31325572488;FOXP1:-1.33086638617;ALX1:-1.33725675621;FOXO1,3,4:-1.3420200919;NANOG:-1.35423498877;BPTF:-1.35610544715;IKZF2:-1.38136769025;BREu{core}:-1.42107689092;FOXN1:-1.42252449507;RFX2..5_RFXANK_RFXAP:-1.5490344851;NKX6-1,2:-1.65887207642;CDX1,2,4:-1.67380376465
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11417-118F4;search_select_hide=table117:FF:11417-118F4
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Fibroblast - Cardiac, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12027
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage20 weeks old fetus
sexfemale
ageembryo 20week
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1994
catalog numberCA306-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005613
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12027 CAGE DRX008245 DRR009117
Accession ID Hg19

Library idBAMCTSS
CNhs12027 DRZ000542 DRZ001927
Accession ID Hg38

Library idBAMCTSS
CNhs12027 DRZ011892 DRZ013277
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005613
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.GTGGCC sRNA-Seq DRX037178 DRR041544
Accession ID Hg19

Library idBAMCTSS
SRhi10011.GTGGCC DRZ007186


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0863
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.234
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0958
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.855
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.286
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0765
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.394
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.252
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.475
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.174
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0805
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.167
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00214
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0958
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.163
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.121
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0958
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.791
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.298
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.005
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.898
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.87
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.973
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12027

Jaspar motifP-value
MA0002.20.741
MA0003.10.234
MA0004.10.845
MA0006.10.0427
MA0007.10.408
MA0009.10.159
MA0014.10.662
MA0017.10.876
MA0018.20.00115
MA0019.10.126
MA0024.11.28465e-4
MA0025.10.324
MA0027.10.24
MA0028.10.533
MA0029.10.0903
MA0030.10.139
MA0031.10.0223
MA0035.20.977
MA0038.10.155
MA0039.20.863
MA0040.10.609
MA0041.10.397
MA0042.10.817
MA0043.19.47502e-4
MA0046.10.463
MA0047.20.883
MA0048.10.209
MA0050.10.00986
MA0051.10.265
MA0052.10.712
MA0055.10.318
MA0057.10.198
MA0058.10.593
MA0059.10.612
MA0060.10.0154
MA0061.10.562
MA0062.20.0294
MA0065.20.477
MA0066.10.261
MA0067.10.017
MA0068.10.203
MA0069.10.438
MA0070.10.273
MA0071.10.801
MA0072.10.861
MA0073.10.758
MA0074.10.133
MA0076.10.188
MA0077.10.121
MA0078.10.373
MA0079.20.191
MA0080.25.70045e-7
MA0081.10.023
MA0083.10.0174
MA0084.10.43
MA0087.10.769
MA0088.10.845
MA0090.10.00681
MA0091.10.253
MA0092.10.499
MA0093.10.841
MA0099.20.379
MA0100.10.106
MA0101.10.351
MA0102.23.85922e-4
MA0103.10.842
MA0104.20.109
MA0105.10.475
MA0106.10.361
MA0107.10.405
MA0108.20.00252
MA0111.10.0912
MA0112.20.0225
MA0113.10.365
MA0114.10.269
MA0115.10.165
MA0116.10.792
MA0117.10.237
MA0119.10.642
MA0122.10.638
MA0124.10.112
MA0125.10.255
MA0131.10.0982
MA0135.10.405
MA0136.11.4726e-7
MA0137.20.0749
MA0138.20.315
MA0139.10.48
MA0140.10.638
MA0141.10.202
MA0142.10.124
MA0143.10.371
MA0144.10.656
MA0145.10.36
MA0146.10.192
MA0147.10.207
MA0148.10.578
MA0149.10.763
MA0150.10.14
MA0152.10.417
MA0153.10.549
MA0154.10.415
MA0155.10.034
MA0156.10.00129
MA0157.10.0289
MA0159.10.271
MA0160.10.503
MA0162.10.0654
MA0163.10.178
MA0164.10.576
MA0258.10.0465
MA0259.10.276



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12027

Novel motifP-value
10.989
100.26
1000.57
1010.297
1020.5
1030.674
1040.43
1050.549
1060.108
1070.0659
1080.148
1090.0586
110.34
1100.672
1110.743
1120.597
1130.0425
1140.682
1150.00411
1160.106
1170.848
1180.68
1190.643
120.741
1200.0615
1210.893
1220.333
1238.62972e-4
1240.166
1250.931
1260.925
1270.633
1280.616
1290.748
130.961
1300.755
1310.455
1320.523
1330.558
1340.567
1350.856
1360.182
1370.0904
1380.445
1390.999
140.568
1400.497
1410.342
1420.418
1430.0576
1440.745
1450.709
1460.834
1470.143
1480.292
1490.0125
150.738
1500.0393
1510.955
1520.00532
1530.335
1540.586
1550.31
1560.696
1570.376
1580.038
1590.875
160.084
1600.334
1610.406
1620.485
1630.812
1640.238
1650.208
1660.717
1670.668
1680.528
1690.0725
170.35
180.255
190.0781
20.407
200.592
210.41
220.262
230.787
240.928
250.159
260.556
270.369
280.154
290.465
30.835
300.441
310.283
326.62059e-15
330.822
340.558
350.529
360.337
370.0956
380.651
390.563
40.641
400.534
410.766
420.335
430.933
440.134
450.455
460.501
470.857
480.377
490.425
50.773
500.935
510.718
520.911
530.12
540.553
550.417
560.992
570.831
580.105
590.0421
60.912
600.898
610.778
620.279
630.768
640.766
650.372
660.623
670.839
680.481
690.196
70.326
700.639
710.79
720.357
730.00116
740.897
750.945
760.357
770.0155
780.942
791.65658e-4
80.17
800.631
810.71
820.566
830.128
840.304
850.22
860.858
870.00583
880.601
890.0169
90.913
900.0354
910.704
920.906
930.929
940.715
950.0914
960.209
970.627
980.335
990.0201



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12027


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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