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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004715
|DRA_sample_Accession=CAGE@SAMD00004715
|accession_numbers=CAGE;DRX008391;DRR009263;DRZ000688;DRZ002073
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004715
|accession_numbers=CAGE;DRX008391;DRR009263;DRZ000688;DRZ002073;DRZ012038;DRZ013423
|accession_numbers_RNASeq=sRNA-Seq;DRX037252;DRR041618;DRZ007260
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10015,,,
|profile_srnaseq=SRhi10015,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 80: Line 82:
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|sample_age=embryo 18 week
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=HES1:1.77216532903;ZNF238:1.60185312871;TBP:1.44554122148;IKZF1:1.43376415925;ZNF423:1.3601962402;MTF1:1.3137049724;ESR1:1.24943103433;RXR{A,B,G}:1.24858552675;GLI1..3:1.24746777343;HMX1:1.21892174947;TAL1_TCF{3,4,12}:1.1608779121;bHLH_family:1.13239092173;TFAP4:1.05588170978;TLX1..3_NFIC{dimer}:1.03787041297;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02876197408;ZNF148:0.98609783503;ATF6:0.976909935083;XBP1:0.972148112313;GFI1B:0.906529691588;TFCP2:0.9052599199;UFEwm:0.895982859092;RXRA_VDR{dimer}:0.872190940129;SPZ1:0.86115044644;TFAP2B:0.860337803311;NR3C1:0.849276761362;GTF2A1,2:0.842171550488;LHX3,4:0.835492971852;NHLH1,2:0.825345799893;HOX{A6,A7,B6,B7}:0.813325242657;EBF1:0.795213424921;PAX5:0.790334825559;NR6A1:0.763044446901;GTF2I:0.731209209722;HIC1:0.727293228587;AR:0.711200609046;MAZ:0.692663473893;GCM1,2:0.676321669906;TFAP2{A,C}:0.65819802874;TP53:0.644221194065;MAFB:0.641691244497;SMAD1..7,9:0.569408614678;TEAD1:0.560022967723;MED-1{core}:0.536503402992;STAT5{A,B}:0.522718204899;PATZ1:0.510246470531;PPARG:0.47085282058;ZBTB6:0.433860835962;RREB1:0.425886064287;SREBF1,2:0.408653121464;MYFfamily:0.403987337741;HOX{A5,B5}:0.377411649254;SP1:0.346998186433;SRF:0.311528237737;GFI1:0.301784920416;ALX4:0.287879606091;KLF4:0.279992938543;XCPE1{core}:0.278724069296;EGR1..3:0.273365063512;HLF:0.261327575498;ZNF384:0.257778845565;MZF1:0.256467748354;FOXO1,3,4:0.254701785753;NFATC1..3:0.240179713267;REST:0.236832983289;NFE2L1:0.232739332259;HAND1,2:0.231043940661;MYBL2:0.22736498713;SOX17:0.178688547662;POU3F1..4:0.131919665677;GZF1:0.118144409336;MTE{core}:0.107594444281;AIRE:0.0859279553855;PAX1,9:0.0803055502461;YY1:0.0795808714296;STAT2,4,6:0.0719247824139;NR1H4:0.0702403389982;AHR_ARNT_ARNT2:0.0641851157455;ZIC1..3:0.0514726314997;POU2F1..3:0.0422756711484;NANOG{mouse}:0.0356070405151;POU6F1:0.0200538422302;PRRX1,2:0.014487031628;RORA:-0.020645582271;NKX2-3_NKX2-5:-0.0489538770293;FOS_FOS{B,L1}_JUN{B,D}:-0.0522759201472;HNF1A:-0.0719518125605;ZNF143:-0.0740155326071;NR5A1,2:-0.0764458806688;BACH2:-0.0914738494219;TBX4,5:-0.107954397595;TFDP1:-0.113478417542;HIF1A:-0.118299634311;ESRRA:-0.124650334788;FOXL1:-0.125514703178;RFX1:-0.1327071915;HNF4A_NR2F1,2:-0.138901229558;NFE2L2:-0.15952433543;LEF1_TCF7_TCF7L1,2:-0.17119753991;PRDM1:-0.174948403029;NFE2:-0.179991370431;TOPORS:-0.187533529178;FOSL2:-0.191445373322;TGIF1:-0.19656047264;NFIX:-0.198944332639;CEBPA,B_DDIT3:-0.214417576824;MEF2{A,B,C,D}:-0.217214934812;MYOD1:-0.255520964877;ZFP161:-0.277116599596;NKX3-2:-0.277447064291;NFIL3:-0.281178646088;NFY{A,B,C}:-0.287257533173;EN1,2:-0.292642257055;RUNX1..3:-0.319057265435;BREu{core}:-0.32314955516;JUN:-0.329286018684;NKX2-2,8:-0.360746570869;EVI1:-0.362604958699;NFKB1_REL_RELA:-0.363552588488;VSX1,2:-0.364154218539;ADNP_IRX_SIX_ZHX:-0.367224085257;SOX5:-0.388399573275;ALX1:-0.390846840247;NKX3-1:-0.393290226661;PBX1:-0.405162123977;DBP:-0.409073205545;FOX{D1,D2}:-0.411690475467;PAX6:-0.441976386587;GATA4:-0.472681555714;CDC5L:-0.491590860585;ARID5B:-0.491972251554;ZEB1:-0.497345128866;HOX{A4,D4}:-0.499627352393;PAX8:-0.504499321175;FOXP3:-0.527993971755;ONECUT1,2:-0.53313507069;ATF2:-0.537240692652;STAT1,3:-0.542841769046;GATA6:-0.557299406641;LMO2:-0.558458965088;SOX{8,9,10}:-0.562299570695;CDX1,2,4:-0.563676144486;POU5F1:-0.576618760336;RBPJ:-0.578533654534;TLX2:-0.580435393355;CREB1:-0.583828863122;SPI1:-0.585358812898;NRF1:-0.587866799909;ATF4:-0.607067724236;FOXM1:-0.613133959575;NKX2-1,4:-0.616158595562;FOX{F1,F2,J1}:-0.618435652562;ETS1,2:-0.625104225367;CUX2:-0.628106126755;NANOG:-0.667684789628;SNAI1..3:-0.672654228451;PAX4:-0.681202371905;PAX2:-0.681248263488;MYB:-0.681612144069;DMAP1_NCOR{1,2}_SMARC:-0.692585206396;IRF1,2:-0.70365737285;SPIB:-0.705159491586;NKX6-1,2:-0.705246088339;ATF5_CREB3:-0.707986884341;PITX1..3:-0.710687180371;ELK1,4_GABP{A,B1}:-0.719782741067;TEF:-0.720394588884;HSF1,2:-0.728065614022;HMGA1,2:-0.729469879695;FOXQ1:-0.757979932638;POU1F1:-0.788779319805;SOX2:-0.789305952704;RFX2..5_RFXANK_RFXAP:-0.810659678785;EP300:-0.812958365813;BPTF:-0.832594207471;IRF7:-0.836007486539;E2F1..5:-0.85605316677;ZBTB16:-0.865722551759;HOXA9_MEIS1:-0.963255927983;OCT4_SOX2{dimer}:-0.983759783209;HBP1_HMGB_SSRP1_UBTF:-1.05095193765;ELF1,2,4:-1.08104340104;PAX3,7:-1.16146065779;FOXA2:-1.26914796718;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27418855585;FOX{I1,J2}:-1.31781257113;IKZF2:-1.45222535354;T:-1.46259123685;CRX:-1.46489331714;FOXD3:-1.51472195341;FOXP1:-1.53176301624;FOXN1:-1.63502948034;PDX1:-1.91137948069
|top_motifs=HES1:1.77216532903;ZNF238:1.60185312871;TBP:1.44554122148;IKZF1:1.43376415925;ZNF423:1.3601962402;MTF1:1.3137049724;ESR1:1.24943103433;RXR{A,B,G}:1.24858552675;GLI1..3:1.24746777343;HMX1:1.21892174947;TAL1_TCF{3,4,12}:1.1608779121;bHLH_family:1.13239092173;TFAP4:1.05588170978;TLX1..3_NFIC{dimer}:1.03787041297;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02876197408;ZNF148:0.98609783503;ATF6:0.976909935083;XBP1:0.972148112313;GFI1B:0.906529691588;TFCP2:0.9052599199;UFEwm:0.895982859092;RXRA_VDR{dimer}:0.872190940129;SPZ1:0.86115044644;TFAP2B:0.860337803311;NR3C1:0.849276761362;GTF2A1,2:0.842171550488;LHX3,4:0.835492971852;NHLH1,2:0.825345799893;HOX{A6,A7,B6,B7}:0.813325242657;EBF1:0.795213424921;PAX5:0.790334825559;NR6A1:0.763044446901;GTF2I:0.731209209722;HIC1:0.727293228587;AR:0.711200609046;MAZ:0.692663473893;GCM1,2:0.676321669906;TFAP2{A,C}:0.65819802874;TP53:0.644221194065;MAFB:0.641691244497;SMAD1..7,9:0.569408614678;TEAD1:0.560022967723;MED-1{core}:0.536503402992;STAT5{A,B}:0.522718204899;PATZ1:0.510246470531;PPARG:0.47085282058;ZBTB6:0.433860835962;RREB1:0.425886064287;SREBF1,2:0.408653121464;MYFfamily:0.403987337741;HOX{A5,B5}:0.377411649254;SP1:0.346998186433;SRF:0.311528237737;GFI1:0.301784920416;ALX4:0.287879606091;KLF4:0.279992938543;XCPE1{core}:0.278724069296;EGR1..3:0.273365063512;HLF:0.261327575498;ZNF384:0.257778845565;MZF1:0.256467748354;FOXO1,3,4:0.254701785753;NFATC1..3:0.240179713267;REST:0.236832983289;NFE2L1:0.232739332259;HAND1,2:0.231043940661;MYBL2:0.22736498713;SOX17:0.178688547662;POU3F1..4:0.131919665677;GZF1:0.118144409336;MTE{core}:0.107594444281;AIRE:0.0859279553855;PAX1,9:0.0803055502461;YY1:0.0795808714296;STAT2,4,6:0.0719247824139;NR1H4:0.0702403389982;AHR_ARNT_ARNT2:0.0641851157455;ZIC1..3:0.0514726314997;POU2F1..3:0.0422756711484;NANOG{mouse}:0.0356070405151;POU6F1:0.0200538422302;PRRX1,2:0.014487031628;RORA:-0.020645582271;NKX2-3_NKX2-5:-0.0489538770293;FOS_FOS{B,L1}_JUN{B,D}:-0.0522759201472;HNF1A:-0.0719518125605;ZNF143:-0.0740155326071;NR5A1,2:-0.0764458806688;BACH2:-0.0914738494219;TBX4,5:-0.107954397595;TFDP1:-0.113478417542;HIF1A:-0.118299634311;ESRRA:-0.124650334788;FOXL1:-0.125514703178;RFX1:-0.1327071915;HNF4A_NR2F1,2:-0.138901229558;NFE2L2:-0.15952433543;LEF1_TCF7_TCF7L1,2:-0.17119753991;PRDM1:-0.174948403029;NFE2:-0.179991370431;TOPORS:-0.187533529178;FOSL2:-0.191445373322;TGIF1:-0.19656047264;NFIX:-0.198944332639;CEBPA,B_DDIT3:-0.214417576824;MEF2{A,B,C,D}:-0.217214934812;MYOD1:-0.255520964877;ZFP161:-0.277116599596;NKX3-2:-0.277447064291;NFIL3:-0.281178646088;NFY{A,B,C}:-0.287257533173;EN1,2:-0.292642257055;RUNX1..3:-0.319057265435;BREu{core}:-0.32314955516;JUN:-0.329286018684;NKX2-2,8:-0.360746570869;EVI1:-0.362604958699;NFKB1_REL_RELA:-0.363552588488;VSX1,2:-0.364154218539;ADNP_IRX_SIX_ZHX:-0.367224085257;SOX5:-0.388399573275;ALX1:-0.390846840247;NKX3-1:-0.393290226661;PBX1:-0.405162123977;DBP:-0.409073205545;FOX{D1,D2}:-0.411690475467;PAX6:-0.441976386587;GATA4:-0.472681555714;CDC5L:-0.491590860585;ARID5B:-0.491972251554;ZEB1:-0.497345128866;HOX{A4,D4}:-0.499627352393;PAX8:-0.504499321175;FOXP3:-0.527993971755;ONECUT1,2:-0.53313507069;ATF2:-0.537240692652;STAT1,3:-0.542841769046;GATA6:-0.557299406641;LMO2:-0.558458965088;SOX{8,9,10}:-0.562299570695;CDX1,2,4:-0.563676144486;POU5F1:-0.576618760336;RBPJ:-0.578533654534;TLX2:-0.580435393355;CREB1:-0.583828863122;SPI1:-0.585358812898;NRF1:-0.587866799909;ATF4:-0.607067724236;FOXM1:-0.613133959575;NKX2-1,4:-0.616158595562;FOX{F1,F2,J1}:-0.618435652562;ETS1,2:-0.625104225367;CUX2:-0.628106126755;NANOG:-0.667684789628;SNAI1..3:-0.672654228451;PAX4:-0.681202371905;PAX2:-0.681248263488;MYB:-0.681612144069;DMAP1_NCOR{1,2}_SMARC:-0.692585206396;IRF1,2:-0.70365737285;SPIB:-0.705159491586;NKX6-1,2:-0.705246088339;ATF5_CREB3:-0.707986884341;PITX1..3:-0.710687180371;ELK1,4_GABP{A,B1}:-0.719782741067;TEF:-0.720394588884;HSF1,2:-0.728065614022;HMGA1,2:-0.729469879695;FOXQ1:-0.757979932638;POU1F1:-0.788779319805;SOX2:-0.789305952704;RFX2..5_RFXANK_RFXAP:-0.810659678785;EP300:-0.812958365813;BPTF:-0.832594207471;IRF7:-0.836007486539;E2F1..5:-0.85605316677;ZBTB16:-0.865722551759;HOXA9_MEIS1:-0.963255927983;OCT4_SOX2{dimer}:-0.983759783209;HBP1_HMGB_SSRP1_UBTF:-1.05095193765;ELF1,2,4:-1.08104340104;PAX3,7:-1.16146065779;FOXA2:-1.26914796718;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27418855585;FOX{I1,J2}:-1.31781257113;IKZF2:-1.45222535354;T:-1.46259123685;CRX:-1.46489331714;FOXD3:-1.51472195341;FOXP1:-1.53176301624;FOXN1:-1.63502948034;PDX1:-1.91137948069
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11425-118G3;search_select_hide=table117:FF:11425-118G3
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Osteoblast - differentiated, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12035
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone
dev stage18 weeks old fetus
sexmale
ageembryo 18 week
cell typeosteocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1266
catalog numberCA406D-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004715
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12035 CAGE DRX008391 DRR009263
Accession ID Hg19

Library idBAMCTSS
CNhs12035 DRZ000688 DRZ002073
Accession ID Hg38

Library idBAMCTSS
CNhs12035 DRZ012038 DRZ013423
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004715
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.CAGATC sRNA-Seq DRX037252 DRR041618
Accession ID Hg19

Library idBAMCTSS
SRhi10015.CAGATC DRZ007260


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.072
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.294
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.236
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.309
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.172
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.313
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.487
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.456
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.487
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.609
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.309
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.139
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.23
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.791
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.34
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.309
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.487
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.613
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12035

Jaspar motifP-value
MA0002.20.225
MA0003.10.127
MA0004.10.188
MA0006.10.158
MA0007.10.0889
MA0009.10.127
MA0014.10.872
MA0017.10.499
MA0018.20.00752
MA0019.10.3
MA0024.10.00119
MA0025.10.0926
MA0027.10.952
MA0028.10.00245
MA0029.10.469
MA0030.10.949
MA0031.10.416
MA0035.20.924
MA0038.10.352
MA0039.20.436
MA0040.10.893
MA0041.10.308
MA0042.10.603
MA0043.10.0273
MA0046.10.846
MA0047.20.792
MA0048.10.646
MA0050.11.98312e-4
MA0051.10.0136
MA0052.10.657
MA0055.10.793
MA0057.10.442
MA0058.10.0925
MA0059.10.892
MA0060.10.8
MA0061.10.136
MA0062.21.12364e-9
MA0065.20.623
MA0066.10.738
MA0067.10.0626
MA0068.10.937
MA0069.10.682
MA0070.10.363
MA0071.10.612
MA0072.10.79
MA0073.10.829
MA0074.10.32
MA0076.11.09542e-4
MA0077.10.794
MA0078.10.69
MA0079.20.328
MA0080.23.61176e-8
MA0081.12.52732e-4
MA0083.10.0667
MA0084.10.956
MA0087.10.846
MA0088.10.884
MA0090.10.0356
MA0091.10.0153
MA0092.10.263
MA0093.10.171
MA0099.20.083
MA0100.10.0269
MA0101.10.0129
MA0102.20.237
MA0103.10.397
MA0104.20.635
MA0105.10.0668
MA0106.10.936
MA0107.10.0155
MA0108.21.29209e-13
MA0111.10.217
MA0112.20.153
MA0113.10.0208
MA0114.10.259
MA0115.10.0345
MA0116.10.0868
MA0117.10.154
MA0119.10.182
MA0122.10.996
MA0124.10.143
MA0125.10.949
MA0131.10.131
MA0135.10.056
MA0136.12.53926e-11
MA0137.20.404
MA0138.20.104
MA0139.10.724
MA0140.10.557
MA0141.10.687
MA0142.10.536
MA0143.10.509
MA0144.10.93
MA0145.10.813
MA0146.10.285
MA0147.10.323
MA0148.10.418
MA0149.10.236
MA0150.10.0411
MA0152.10.703
MA0153.10.214
MA0154.10.803
MA0155.10.0419
MA0156.15.36284e-11
MA0157.10.416
MA0159.10.941
MA0160.10.461
MA0162.10.0403
MA0163.10.893
MA0164.10.571
MA0258.10.593
MA0259.10.317



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12035

Novel motifP-value
10.407
100.151
1000.728
1010.588
1020.542
1030.634
1040.342
1050.866
1060.323
1070.0448
1080.286
1090.569
110.768
1100.807
1110.571
1120.892
1130.638
1140.366
1150.00379
1160.0313
1170.232
1180.457
1190.854
120.515
1200.115
1210.465
1220.228
1238.39511e-4
1240.0183
1250.916
1260.777
1270.971
1280.0469
1290.828
130.493
1300.343
1310.319
1320.0622
1330.182
1340.978
1350.915
1360.962
1370.019
1380.678
1390.798
140.82
1400.573
1410.117
1420.0581
1430.59
1440.877
1450.656
1460.139
1470.414
1480.862
1490.0396
150.352
1500.284
1510.517
1520.0098
1530.879
1540.144
1550.32
1560.748
1570.5
1580.1
1590.636
160.379
1600.495
1610.611
1620.27
1630.155
1640.703
1650.774
1660.103
1670.353
1680.955
1690.264
170.952
180.337
190.113
20.122
200.531
210.76
220.265
230.844
240.807
250.115
260.98
270.388
280.0614
290.341
30.448
300.375
310.243
323.19379e-8
330.684
340.648
350.342
360.128
370.211
380.946
390.496
40.937
400.777
410.113
420.0764
430.802
440.945
450.501
460.91
470.516
480.996
490.768
50.381
500.873
510.477
520.335
530.19
540.523
550.625
560.826
570.539
580.0973
590.0747
60.977
600.677
610.813
620.0933
630.779
640.787
650.201
660.727
670.94
680.267
690.334
70.128
700.977
710.243
720.863
730.00356
740.76
750.473
760.299
770.0936
780.179
790.0522
80.171
800.602
810.91
820.885
830.374
840.359
850.214
860.657
870.0733
880.33
890.112
90.269
900.00392
910.738
920.515
930.944
940.213
950.779
960.94
970.41
980.964
990.0179



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12035


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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